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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061194 ID=TCONS_00061194|Name=TCONS_00061194|organism=Clytia hemisphaerica|type=transcript|length=2832bp
NNACCACCACCACCCATAGTACCAAAAAACCTGACGGTGGAAATAAAGAT
TGTGTTGACAAGAACAAAAGCTGTGGTGGTTGGGCTAGATATGGATACTG
TAAAAGCAATGCATATGTTAAAACGAATTGTAAAAAGAGTTGCAAATCAT
GTGATAACTCGAGTTGTAAAGATAACAACAAGTGGTGCAACTCGTGGAAA
GGAAAAGGCTATTGTAATTCGAATAGTCAACACTACAACTACATgatcaa
aaattgtaaaaaagcaTGCTCCCTTTGTTAATCAAACAAATACAGGCCTG
AATTGTGTCAAACTTGTAATTTTAGGTATCACaatcaataaaatttatat
ttttctaaggATCCAGGTTCATTTTTATAAATAGGATTTTATATACCGAT
TACATTTTCtataatttataaaataaaagtgttttcatGAATGTGCGTTT
TTATaactattactttttaatttcttttatacattttcttttttatgttt
gTACTATATACCATCTTATTATTGATTAAAAGGTCAAAGTAAAATGTTCT
CTTGTTCTTAGCCCTTTAAAATACCTTACTGTAGAGACATTTGTTTTATA
TTGTTTTTCACTAATTCCTTTCATTTTCTtaggggttttggccaaatttg
ggattttaaattttttgtgagcactaaattttgcaaaaattaatccacac
AAATTTATAAAGTAAATAGCACAATTTTAACACATTTTCTTTagttttca
gccaatcagacacatgttttctttatttcacAGGCAATTGTTTTAAAATC
AGGCATTTGGTACTTTATGGAAAACCCTATTACACGAATCTAGAATTATC
AGGGAACTAATCAATCATCTACTATCAACATTAACAAGTCAGACTCTCGA
GAaggttttttttgtttatatggtgaaaaataaagcaaagaatgggtttt
tcaatttttagcatttgcaaacaaagattttggaATATACTACATGGTAA
TGACaatccaaaaatcaagaaattaaaatcaaatacaaaatcatttatca
atatttataagaacaaactttacaGTAATacgcaaaaataaaatttgttt
ggTTACATTAAGAAATGCTGTTAAATTGTGTTAAAAAGTACTTTGCGTAC
ACATTATGTAGATTATGATCAGGGGGTAATGAAATTAAACTTTCATCAAC
TAAGTAATAAATATttgaatgttaatttttttacatttctgATGAGTTAC
TACTTAAATGTTGAGAGACACTACTTGCTCCTAAACTACCGTAAGTtcgt
ctaatgtcgacatccgtcttctaatttcgacatccttctttatagatagg
aataataagaaggtcgaaatcactgatagactaaagatttttcctctcat
cgcgctgatcaaagtcaatcagcgatttcgaccttcctcagtttctattg
ttcctatctctaaagaagggtgtcgaaattagaagacggatgtcgacatt
agaccaacttacggtaggtCTTAGTGTTGGTCTATacatcaaatttgaaa
atatttgtgaGTAAACAGGTCTAAATCCATCACTCTTCATTGGGGTCATC
TTCATTAAAATATGTTTATGATACAATCCATCGCTTTTCatatagaaaat
tgaatacCCATCAATATATCTTGAAGATTCCCTTTCATCAACAAGGCCGA
TCAAAGAAAGAGGTTTGATGTAGCGTGGAATTCCTTGGACTTGCCATCTA
ACATGGATAGACCCATTAGTTGAATTTTTGTTCATTTGTAGGATGCTGAG
CTCTGGATTATACAACACTATCTTTGTAAGGTTTTTTAAAATGTTGATTT
GAAGAATGTAAGAATTTAATGTTTCAGTCTTGGTTCCAATGAGTTGATTC
TCAAAGACAACCTTATAACTGCATCGAATGTATGACCAACCCAATGTTGT
GAATAACTTTGGTGCTTGATCATGAAAATAAAGCATCATTTCTGTCATTT
GACTTTCACTTGGTAGATCATTCCAATTATCTTTGCTTTTCTTTAAAGGC
TTTTCTTCTGTACTTCCAATACTTTGAGAATTCAAGAGAGGAGACTCATT
GGAATTTGATGCATTATTACCAATATTGATACATTTAGTTGCAGGAAAGC
GAGAATAATATTTCATTTGCATCAGTTCTCTTCCATTGACAGATATACAA
CTACCACTCAATTCTTTTTTCTTGCAAACTTGATAAACATAAACATCTTC
TAATGgatttattttcttgaatattgAAGAGCTTCTTAGTTCACTCATTG
AAACAGCAGTTGTTCTAATATTATTGTCAACACAAtcacaatttttattt
ttattcgagGAGACTACAGTGACAGTTTTATGTTTCCTCAGTTCATTTGG
AAGCAAAGCCGTGATGTAAGAGGCCTCTTTTGTCTTCTTAAATTCATTAT
CAAATTGGCTCACAAGCGAATTTGCAGAAGAAGAATGCCAAGTTGTTGGT
GCAAAACCAGCAGAAAACTTATTTGACAGCAAACAATAATACGATGGCTT
GTATATCACATTTGACGTTCttgaaagtaacatttttgTGTGTAATTTAT
TACAATGCTTATGTTAAATACGAGTTACCGTTATTGTAAACTTCTAGtct
ttgaatttaaaatttctttactttttgaagTGAATTTGATCTGGAAATCC
TCAATTTCGTGACCGCCATCTTGATTTGTTCTAAATATTTCATCCAACCT
GCCTGGgagaggataattacaaggtctcaaaagaaggttgtctattgctc
attccgacatcgacttataacctgactgaaat Run BLAST on NCBI transcript from alignment at scaffold_354:780914..784040- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061194 ID=TCONS_00061194|Name=TCONS_00061194|organism=Clytia hemisphaerica|type=transcript|length=3127bp|location=Sequence derived from alignment at scaffold_354:780914..784040- (Clytia hemisphaerica)
NNACCACCACCACCCATAGTACCAAAAAACCTGACGGTGGAAATAAAGGT
ATAAAATGACTCGAATTTTACAAAGACATCCTAGTAGTAAACATACAAAT
TTCAATAGATCAAATTTAGCATCCCCCGAGCATCCCCCCAAAAAAGAAAA
TATAATAGACTTCAATGACATTACATTACGACAGAAATTTTGAAAGGGTA
AAGGCCCTTTGCTGTATTTATGTCCATTAAAAATTGACCTACATATATAG
ACTTACATAAACTTTGTCATTCGACAAACGACAAAATTAGAGCTCCAACA
ATATCCAAACATTATAGTGTTATTCAATATTTATTTCATCTAGATTGTGT
TGACAAGAACAAAAGCTGTGGTGGTTGGGCTAGATATGGATACTGTAAAA
GCAATGCATATGTTAAAACGAATTGTAAAAAGAGTTGCAAATCATGTGAT
AACTCGAGTTGTAAAGATAACAACAAGTGGTGCAACTCGTGGAAAGGAAA
AGGCTATTGTAATTCGAATAGTCAACACTACAACTACATGATCAAAAATT
GTAAAAAAGCATGCTCCCTTTGTTAATCAAACAAATACAGGCCTGAATTG
TGTCAAACTTGTAATTTTAGGTATCACAATCAATAAAATTTATATTTTTC
TAAGGATCCAGGTTCATTTTTATAAATAGGATTTTATATACCGATTACAT
TTTCTATAATTTATAAAATAAAAGTGTTTTCATGAATGTGCGTTTTTATA
ACTATTACTTTTTAATTTCTTTTATACATTTTCTTTTTTATGTTTGTACT
ATATACCATCTTATTATTGATTAAAAGGTCAAAGTAAAATGTTCTCTTGT
TCTTAGCCCTTTAAAATACCTTACTGTAGAGACATTTGTTTTATATTGTT
TTTCACTAATTCCTTTCATTTTCTTAGGGGTTTTGGCCAAATTTGGGATT
TTAAATTTTTTGTGAGCACTAAATTTTGCAAAAATTAATCCACACAAATT
TATAAAGTAAATAGCACAATTTTAACACATTTTCTTTAGTTTTCAGCCAA
TCAGACACATGTTTTCTTTATTTCACAGGCAATTGTTTTAAAATCAGGCA
TTTGGTACTTTATGGAAAACCCTATTACACGAATCTAGAATTATCAGGGA
ACTAATCAATCATCTACTATCAACATTAACAAGTCAGACTCTCGAGAAGG
TTTTTTTTGTTTATATGGTGAAAAATAAAGCAAAGAATGGGTTTTTCAAT
TTTTAGCATTTGCAAACAAAGATTTTGGAATATACTACATGGTAATGACA
ATCCAAAAATCAAGAAATTAAAATCAAATACAAAATCATTTATCAATATT
TATAAGAACAAACTTTACAGTAATACGCAAAAATAAAATTTGTTTGGTTA
CATTAAGAAATGCTGTTAAATTGTGTTAAAAAGTACTTTGCGTACACATT
ATGTAGATTATGATCAGGGGGTAATGAAATTAAACTTTCATCAACTAAGT
AATAAATATTTGAATGTTAATTTTTTTACATTTCTGATGAGTTACTACTT
AAATGTTGAGAGACACTACTTGCTCCTAAACTACCGTAAGTTCGTCTAAT
GTCGACATCCGTCTTCTAATTTCGACATCCTTCTTTATAGATAGGAATAA
TAAGAAGGTCGAAATCACTGATAGACTAAAGATTTTTCCTCTCATCGCGC
TGATCAAAGTCAATCAGCGATTTCGACCTTCCTCAGTTTCTATTGTTCCT
ATCTCTAAAGAAGGGTGTCGAAATTAGAAGACGGATGTCGACATTAGACC
AACTTACGGTAGGTCTTAGTGTTGGTCTATACATCAAATTTGAAAATATT
TGTGAGTAAACAGGTCTAAATCCATCACTCTTCATTGGGGTCATCTTCAT
TAAAATATGTTTATGATACAATCCATCGCTTTTCATATAGAAAATTGAAT
ACCCATCAATATATCTTGAAGATTCCCTTTCATCAACAAGGCCGATCAAA
GAAAGAGGTTTGATGTAGCGTGGAATTCCTTGGACTTGCCATCTAACATG
GATAGACCCATTAGTTGAATTTTTGTTCATTTGTAGGATGCTGAGCTCTG
GATTATACAACACTATCTTTGTAAGGTTTTTTAAAATGTTGATTTGAAGA
ATGTAAGAATTTAATGTTTCAGTCTTGGTTCCAATGAGTTGATTCTCAAA
GACAACCTTATAACTGCATCGAATGTATGACCAACCCAATGTTGTGAATA
ACTTTGGTGCTTGATCATGAAAATAAAGCATCATTTCTGTCATTTGACTT
TCACTTGGTAGATCATTCCAATTATCTTTGCTTTTCTTTAAAGGCTTTTC
TTCTGTACTTCCAATACTTTGAGAATTCAAGAGAGGAGACTCATTGGAAT
TTGATGCATTATTACCAATATTGATACATTTAGTTGCAGGAAAGCGAGAA
TAATATTTCATTTGCATCAGTTCTCTTCCATTGACAGATATACAACTACC
ACTCAATTCTTTTTTCTTGCAAACTTGATAAACATAAACATCTTCTAATG
GATTTATTTTCTTGAATATTGAAGAGCTTCTTAGTTCACTCATTGAAACA
GCAGTTGTTCTAATATTATTGTCAACACAATCACAATTTTTATTTTTATT
CGAGGAGACTACAGTGACAGTTTTATGTTTCCTCAGTTCATTTGGAAGCA
AAGCCGTGATGTAAGAGGCCTCTTTTGTCTTCTTAAATTCATTATCAAAT
TGGCTCACAAGCGAATTTGCAGAAGAAGAATGCCAAGTTGTTGGTGCAAA
ACCAGCAGAAAACTTATTTGACAGCAAACAATAATACGATGGCTTGTATA
TCACATTTGACGTTCTTGAAAGTAACATTTTTGTGTGTAATTTATTACAA
TGCTTATGTTAAATACGAGTTACCGTTATTGTAAACTTCTAGTCTTTGAA
TTTAAAATTTCTTTACTTTTTGAAGTGAATTTGATCTGGAAATCCTCAAT
TTCGTGACCGCCATCTTGATTTGTTCTAAATATTTCATCCAACCTGCCTG
GGAGAGGATAATTACAAGGTCTCAAAAGAAGGTTGTCTATTGCTCATTCC
GACATCGACTTATAACCTGACTGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061194-exon-scaffold_354-1575043694:783993..784040 | TCONS_00061194-exon-scaffold_354-1575043694:783993..784040 | Clytia hemisphaerica | exon |
| TCONS_00061194-exon-scaffold_354-1575043694:780914..783697 | TCONS_00061194-exon-scaffold_354-1575043694:780914..783697 | Clytia hemisphaerica | exon |
| TCONS_00061194-exon-scaffold_354-1510915933:783993..784040 | TCONS_00061194-exon-scaffold_354-1510915933:783993..784040 | Clytia hemisphaerica | exon |
| TCONS_00061194-exon-scaffold_354-1510915933:780914..783697 | TCONS_00061194-exon-scaffold_354-1510915933:780914..783697 | Clytia hemisphaerica | exon |
| TCONS_00061194-exon-scaffold_354-1491911889:783993..784040 | TCONS_00061194-exon-scaffold_354-1491911889:783993..784040 | Clytia hemisphaerica | exon |
| TCONS_00061194-exon-scaffold_354-1491911889:780914..783697 | TCONS_00061194-exon-scaffold_354-1491911889:780914..783697 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_354 | supercontig | scaffold_354:780914..784040 - |
Blast
The following BLAST results are available for this feature:
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