TCONS_00061238 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061238
Unique NameTCONS_00061238
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length270

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061238 ID=TCONS_00061238|Name=TCONS_00061238|organism=Clytia hemisphaerica|type=transcript|length=270bp
gttcaaaaaaactaaaaaaacctttgaaattcTAGCTCAGAAAACTTACT
AGGAAGCAATTTTGATATGATAATCGAAAAAGTCCAACAATGTTTGTGTT
TgactttttgagccgagaatggtttattttcattaaaatcgagaATTCTC
AACAATTCTCTTGTGTCCCTGCAATGTTTTTGTGTCACCTTTTGCACCAA
GCTCATCCAAGCCTGTAGAACTTaaagaaatcgattttggtatcGAACAA
GTGATTCCAAAATGCTGACA
Run BLAST on NCBI

transcript from alignment at scaffold_354:251959..252228

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061238 ID=TCONS_00061238|Name=TCONS_00061238|organism=Clytia hemisphaerica|type=transcript|length=270bp|location=Sequence derived from alignment at scaffold_354:251959..252228 (Clytia hemisphaerica)
TGTCAGCATTTTGGAATCACTTGTTCgataccaaaatcgatttctttAAG
TTCTACAGGCTTGGATGAGCTTGGTGCAAAAGGTGACACAAAAACATTGC
AGGGACACAAGAGAATTGTTGAGAATtctcgattttaatgaaaataaacc
attctcggctcaaaaagtcAAACACAAACATTGTTGGACTTTTTCGATTA
TCATATCAAAATTGCTTCCTAGTAAGTTTTCTGAGCTAgaatttcaaagg
tttttttagtttttttgaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038408XLOC_038408Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061238-exon-scaffold_354-1491911889:251959..252228TCONS_00061238-exon-scaffold_354-1491911889:251959..252228Clytia hemisphaericaexon
TCONS_00061238-exon-scaffold_354-1510915933:251959..252228TCONS_00061238-exon-scaffold_354-1510915933:251959..252228Clytia hemisphaericaexon
TCONS_00061238-exon-scaffold_354-1575043694:251959..252228TCONS_00061238-exon-scaffold_354-1575043694:251959..252228Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:251959..252228 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.26691	0	2.56671	1.25556	0	0	2.18585	0.682122	0.477569	0	0	0.377437	0	0	0	1.03604	0.425439	1.30818	0	0.630413	0.547943	0	0	1.18152	0	3.25826	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061238 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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