TCONS_00061326 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061326
Unique NameTCONS_00061326
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061326 ID=TCONS_00061326|Name=TCONS_00061326|organism=Clytia hemisphaerica|type=transcript|length=469bp
gaaatttttcGGATTAtccttcgttttattttactttaaattGTCAGCTG
GTAATGGTTTCTGGTCCAATCTCCGAGATGCTGATAACGAACTTTACAAA
TCTGCTACGTCTGTTGAAAAGCTTGAGAAGAAATTGAATCGCTACGAAGT
GAATCTAAAATTTCTAATCAATTGTCGAGACCAAAATGTTTTTCCTAAAT
TCGTTCGCTGGAAAAACACGAGATACTTGGATCAATTATCAAAACGGAAA
TATCAACGACGTATATTGCTTGATGAAATATCTACCAAACGTAAACAAAT
ACGTGATATCAGAAAGgaacttttcaacaaaaaggCTGTCTTTAATAACA
AGGCCACGTTCATGAGAAAATTCGCAATCTATCATTCAATCAAAATTGGT
GTCGAAAAATACGTAAAACCCATTCGTGAAAAGCTCCAACGTAAACTCGA
ACTAATGATTAAGGAACGT
Run BLAST on NCBI

protein sequence of TCONS_00061326-protein

>TCONS_00061326-protein ID=TCONS_00061326-protein|Name=TCONS_00061326-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
KFFGLSFVLFYFKLSAGNGFWSNLRDADNELYKSATSVEKLEKKLNRYEV
NLKFLINCRDQNVFPKFVRWKNTRYLDQLSKRKYQRRILLDEISTKRKQI
RDIRKELFNKKAVFNNKATFMRKFAIYHSIKIGVEKYVKPIREKLQRKLE
LMIKER
Run BLAST on NCBI

transcript from alignment at scaffold_355:221159..221627

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061326 ID=TCONS_00061326|Name=TCONS_00061326|organism=Clytia hemisphaerica|type=transcript|length=469bp|location=Sequence derived from alignment at scaffold_355:221159..221627 (Clytia hemisphaerica)
ACGTTCCTTAATCATTAGTTCGAGTTTACGTTGGAGCTTTTCACGAATGG
GTTTTACGTATTTTTCGACACCAATTTTGATTGAATGATAGATTGCGAAT
TTTCTCATGAACGTGGCCTTGTTATTAAAGACAGcctttttgttgaaaag
ttcCTTTCTGATATCACGTATTTGTTTACGTTTGGTAGATATTTCATCAA
GCAATATACGTCGTTGATATTTCCGTTTTGATAATTGATCCAAGTATCTC
GTGTTTTTCCAGCGAACGAATTTAGGAAAAACATTTTGGTCTCGACAATT
GATTAGAAATTTTAGATTCACTTCGTAGCGATTCAATTTCTTCTCAAGCT
TTTCAACAGACGTAGCAGATTTGTAAAGTTCGTTATCAGCATCTCGGAGA
TTGGACCAGAAACCATTACCAGCTGACaatttaaagtaaaataaaacgaa
ggaTAATCCgaaaaatttc

Coding sequence (CDS) from alignment at scaffold_355:221159..221627

>TCONS_00061326 ID=TCONS_00061326|Name=TCONS_00061326|organism=Clytia hemisphaerica|type=CDS|length=468bp|location=Sequence derived from alignment at scaffold_355:221159..221627 (Clytia hemisphaerica)
ACGTTCCTTAATCATTAGTTCGAGTTTACGTTGGAGCTTTTCACGAATGG
GTTTTACGTATTTTTCGACACCAATTTTGATTGAATGATAGATTGCGAAT
TTTCTCATGAACGTGGCCTTGTTATTAAAGACAGcctttttgttgaaaag
ttcCTTTCTGATATCACGTATTTGTTTACGTTTGGTAGATATTTCATCAA
GCAATATACGTCGTTGATATTTCCGTTTTGATAATTGATCCAAGTATCTC
GTGTTTTTCCAGCGAACGAATTTAGGAAAAACATTTTGGTCTCGACAATT
GATTAGAAATTTTAGATTCACTTCGTAGCGATTCAATTTCTTCTCAAGCT
TTTCAACAGACGTAGCAGATTTGTAAAGTTCGTTATCAGCATCTCGGAGA
TTGGACCAGAAACCATTACCAGCTGACaatttaaagtaaaataaaacgaa
ggaTAATCCgaaaaattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038477XLOC_038477Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061326-exon-scaffold_355-1491911889:221159..221627TCONS_00061326-exon-scaffold_355-1491911889:221159..221627Clytia hemisphaericaexon
TCONS_00061326-exon-scaffold_355-1510915933:221159..221627TCONS_00061326-exon-scaffold_355-1510915933:221159..221627Clytia hemisphaericaexon
TCONS_00061326-exon-scaffold_355-1575043694:221159..221627TCONS_00061326-exon-scaffold_355-1575043694:221159..221627Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061326-proteinTCONS_00061326-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_355supercontigscaffold_355:221159..221627 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.36453	0.798378	0.772495	0.755765	0.368029	0.290821	0.175432	0.492711	0.344959	0.284858	0	0.272631	0.181501	0.282736	0.542377	0.249452	0.102435	0.419969	0	0	0.527721	0.386106	0.312908	0.426719	0	0	0.374208	0.199682	0.302904	0.308611
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061326 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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