TCONS_00061381 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061381
Unique NameTCONS_00061381
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1076

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061381 ID=TCONS_00061381|Name=TCONS_00061381|organism=Clytia hemisphaerica|type=transcript|length=1076bp
CCATTTTCTTGGTCGGATGTTGGGAAAGGTCATTTATGAATCAATGATGG
TCGAATTGCCGTTAGCCGATTTTTTCCTTTGTAAACTTCTCAACAAATAT
GGCGCCGATATTGACATTCATCATTTAGAATCACTTGACCCAGATCTTCA
CAGGAATTTATTCGAGTTGAAGAATTATAGTGGAGATGCGGACGACCTCA
GTTTAAATTTCGCTATCATCAAAAATCAATATGGTGAAACAGAGGTGGTA
GAGCTGAAACCAGGCGGAAAAGATATATGCGTGGATAAttcaaataaaat
agaatacaTTCATCTTATGGCTGACTACAAACTTAACAAGCagttGAGAA
ATCAGTGCAATGCATTCAGAGCTGGATTATCTGACGTCATCGACTTGAAA
TGGTTACGGATGTTTAGTCATAATGAACTCCAGATTTTGATATCAGGTGC
ACGTGTAGCGGTTGATTTCGAAGATTTGAAGCAAAATACCAATTATTCTG
GCTCTTTCAAAGAAGAGGATTCATACATCAAAGACTTTTGGGCCATCATT
GAAACATTAACGGATAAACAAAAACAGCAGTTCTTGAAATTCGTCACCAG
TTGTTCCAGACCTCCTCTACTCGGTTTTTCGGAGCTGAACCCGAAATTCT
GTATTCACAGCGGTGGTGAAGTCGATCGTTTGCCAACAGCCAGTACGTGC
ATGAACTTACTCAAACTTCCCATCTATAACTCAATCGGACTTTTACGAAA
ACGCTTAATATATGCTATCGAAGCGGAAGCTGGTTTTGAACTTAGTTGAT
GTCTTACGTTGAATATTAAATAGAGTTCAAGTGTGGTTTGAGAGGATTAA
CGCAACTGAACCGGCAAAAGGAGTCTAAAATGATGCACGAACTTACTCGA
TCAAGCCTGAAGCTactcaaattataaaaatctcGTTGAACTTTAACGAG
AGAGACGTTGATATGATAACGCTTAACGCTTATCGTAACAAAAGTTGGAT
TTAAGTCAATAAAAAGCCTGGGAATGAGCTAAAGGAAACCCAATCAAAGT
CGTTCAGTTGCACTAATTATACGCCG
Run BLAST on NCBI

protein sequence of TCONS_00061381-protein

>TCONS_00061381-protein ID=TCONS_00061381-protein|Name=TCONS_00061381-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
HFLGRMLGKVIYESMMVELPLADFFLCKLLNKYGADIDIHHLESLDPDLH
RNLFELKNYSGDADDLSLNFAIIKNQYGETEVVELKPGGKDICVDNSNKI
EYIHLMADYKLNKQLRNQCNAFRAGLSDVIDLKWLRMFSHNELQILISGA
RVAVDFEDLKQNTNYSGSFKEEDSYIKDFWAIIETLTDKQKQQFLKFVTS
CSRPPLLGFSELNPKFCIHSGGEVDRLPTASTCMNLLKLPIYNSIGLLRK
RLIYAIEAEAGFELS
Run BLAST on NCBI

transcript from alignment at scaffold_358:146928..156537+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061381 ID=TCONS_00061381|Name=TCONS_00061381|organism=Clytia hemisphaerica|type=transcript|length=9610bp|location=Sequence derived from alignment at scaffold_358:146928..156537+ (Clytia hemisphaerica)
CCATTTTCTTGGTCGGATGTTGGGAAAGGTAAGTTAAAGAATCCCGATTC
CTGGATCGGATTATCCCGATacagtttttttaaaataactttcgaactac
tctttcaaatttaatgtattatagctcaaaattcaagttagagcattccc
tatacgataaaaaaagaatgaacaaaaaatttaaatcttgaAGCTCACAA
AtttctcgacaaacctgtatacttggAAGTTGGAAAAGAAACCGTGACAG
GACAAATGCCCCCCGTGACAATTGCCCCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTGAATTCCCATGCACATG
GGctgttattgaaaaacaaaatgaaaataaaaggctTACTGGaaaagtgg
gacgtgggacggtggctcaggtgggacgcttaAGTGGAACGATGCTGGGA
CGTTCAGGTGGGGCGATgctgggacgctcaggtgggacgctcaagtggga
cgatGGTGgaacgctcaggtgggacgatGCTGGGACGCTCTTTCATTTTG
TCGCTTTAATATTCTTGGCTCCGAGAAAACCCAGGTgcgatttatttatt
catttattcattcatgaaacttaaaaaaacgttttcaaaaaaattcagga
tatttcaaagatgaggttttttataagaacattaaggctaaaatcttttt
ttacttttgacaTCTGGGGGGCAATTGTCCCGGGGGCAATTAtccggggg
gcaattgtccggggggcaattgtccTAGAACCAAAGAAACATACTGCATA
GAGGCTTTAGTtatgaaaagtgaaaatataTTGTCTATTTAATGTGTCCA
AGGTTATCATTTACCGAGCTTTCGTAAATGTTGGTGTCAATTTTCTTCTT
AAATTCGTTTTATCTTTTATCCATTTTGTCAGGTCATTTATGAATCAATG
ATGGTCGAATTGCCGTTAGCCGATTTTTTCCTTTGTAAACTTCTCAACAA
ATATGGCGCCGATATTGACATTCATCATTTAGAATCACTTGACCCAGATC
TTCACAGGTAACAAAGCCGGCACAAAAAGTCAACGCAAGTTTTTAAACGT
TTATAGTGTCCGTAAGACGTAACGTTTATAGCGTCCGTAAGACGAACTTC
AAAACAGTGTATCGTCTTTTGGGAAAAAGCTGAACCGATAAGAGTGTAGG
CTGCTGACATCCActaacctttttttttcttgcTAGGAATTTATTCGAGT
TGAAGAATTATAGTGGAGATGCGGACGACCTCAGTTTAAATTTCGCTATC
ATCAAAAATCAATATGGTGAAACAGAGGTATACCAttcttcccagctggc
acacaacgttgtttcaacgttcatctaacgttcacaacgtccatataacg
ttagatgaacgttgaaacaacgttgtgtgtgaGCTGGGTTATTATCAAAA
GGTAGAAACTCATTTTGTCTCAACTACAGTATGTTAGACCCAATCCCATC
CCGGTAAACACGAAGACGTCTTTACCACGTGTTTTCTCGTTTCCAATTCG
GCAGGACGTCTTTGAACCAGTTTGAATCGTCTTTAAGACGTCTTCACTGG
GTTCAACTGGTACGAGTCAAATATTATCATATTGCAAACACTATGCTCTG
CTCTAAATATTGTTCAGAATTGAATTTTCAACAGTAAATAATACTTGATA
GTTTGGAcaccttcaaaaaattttcatgacgtcagcgcttctgtcaattt
ttttgttcagaatACAATTGTGCATGTCTGTGCAAAGTGTCATGCTTTTT
TCACAAACTGAAGTATTGTTATGATATTTTGGTTGAACAGACTAAACTAA
AAGGGGTGTGGTGAATCTGACTTGGTTGAAACACGTGACGTTGCTTTTTG
CTTCAAAGcgaaactgggttctaatgtttatgcATGGCGTTTGATTTTGG
CCTTTAGAGAAAAAGGTACCAAGCACTGGTTGTTATGTTGTTTCACAGTG
gatgatttttctttaaatcgaAAAACTGGCAACAGCTCATTCCTATGCCG
GTCCTTTTATTACTGGCTAGCCAGTTTTTTAACGCTAATGTCTTACTTTA
GGTATTTTTCCATCATAGGACATAAATTACGCCGAAGTTAACTGtttagg
ctttatttacgtaTTTGATATTTGTTTGTAGGTGGTAGAGCTGAAACCAG
GCGGAAAAGATATATGCGTGGATAAttcaaataaaatagaatacaTTCAT
CTTATGGCTGACTACAAACTTAACAAGCaggtttgtgtttttttttttag
gtcAAACATGACCACTAGTTGACCAGAGGCAAAcctaggcaaaaatgggt
gctggatATGTGCGGTCGGCGGTAAGggttggtctctctaagggtcggaa
aattcatgatttttaggaaatttttttgatttcgagAGAAAGAATTGtta
taaagtctctctaagggtaggacttttttcaaaaatggaagaaaattttt
caagaaagtctctctaagggttaccttttccgcaaaaatcagtctctcta
aggttcTGTTTTAAGAGGTCTAGttcgcacatacccctcatctacaaacc
ctagtaccccccccccctggaccaGAACAATTCTTTTTCGGGGAAAACTT
CCTCGCTTGCACCTCTTTTCCCCCAGGTTTATGATGATTCTCTCAATGTA
GCCTTTAAACGGGCCCcaccttttggtaatttttcTATATTATTCTAACC
CCcacggaccttattaggacccacccttttattaattttcgaaaatattt
tcagctgtcaattGTTGTTTTTCACCTGAGAGTACATTGACAAACTCTAT
GAAAGGAAACTCTATAAAAGGCATGAAATTGCCAAAAGTCACGTCTTAGA
ATTCGACTGTTGAAAAAGCAACCCTTTCCTGAGTTGATTTGTTTAAATGT
ATTAGGTCGTAAAAGCAAACAGTTTAAACACGTTGTAAATAACATGATAC
TTGAACTCGTTACTGAGTGTTTTTTAAAACCATTAAAGTGCAATGATTAT
CCATTGAGATGACTACATTCAACAGTGTTTCTATGGTGTTTAACcatgat
atttttgaaatctcgTTTTAAACTAGAGTCTTTTTTtggttaagtttttt
ttaaccgCCATTGAAAGGGCGGTGCTAAATAGGGGAATACAGTGCGATCC
ATATGTTTGCTATCATAGGAAAAAATCACACTACGACTAAGTCAAACTCG
TTTAACCTCGAAATTAAGAACACGTGTGAGTTTTCAAAATaacgaatgtt
ttttttctccaagTAACAAGCAAATTAACACAGCGTGGTTTTCCAAAATC
ACGCGACGACTAAGTCAAACTCATTTCACCTCGAGATGAAGACCACGCgt
gtgttttcaaaaaataacgaATATCTTTTCTGCAAGTAACAAGCAAATTA
ACACAGCGTGGTTTTCCAAAATCACGCGACGACTAAGTCAAACTCATTTC
ACCTCGAATATATACCACTATAAATTCCACAATataatatttacaaattt
gaaaataactttatgATATTAAATTATAACGTCGACgacaaataaagatt
tgaaataCGTTCCTTGGCATTTAGCGAAATATTTGTCAGACTTTGATTCG
ATTTCACGCGTGGGATTTCCGATTTCACATGCGTGTGATTCGCGTGGGAA
GTACCAATTTCACATTTTGTGATTATTGAATTTCACACGCGTgtgatttg
atgatttttcctGTGTATATTGCTACCTGATTAGCTCTTCctataacaat
ttttttctagttGAGAAATCAGTGCAATGCATTCAGAGCTGGATTATCTG
ACGTCATCGACTTGAAATGGTTACGGATGTTTAGTCATAATGAACTCCAG
GTAGGTGTTCAAGGTTATATTTTTACATacgtgttcccgtttcatatcgg
acacatatttcatatcaggacagtgtctgcctattgttatattatgctaa
tGTAAGCAAAaagatgttgttttttcctctttttgatcAATCTTGCtaca
catccgtgtcaattcaatataaaaaagcttgtgaattaaaattgacgagt
aagcaaacaatatcactcttatttaaaaacaaaaccttcaaaGCTACTGT
TCAGCCAATGGATTATTATTAGTGTGGGACGATCACAAATATGTTGCTTA
AAATCACAAAGTGGCATAATTGTTATGTTAAAGGCTTGGACATCCTAGGT
ACTTGTGGAATCGAATTCGAccacaatagacgatatcgcgtttagataaa
tgcaatgcattctggtaNCTGCTAAAatgttgaaagttgaaagtaCAACT
GAAAGCCAAGGTACCATTAAGGGGGAGTAAAAATTGGGATATTTCAATgg
acgatatcgcgtttagataaatgcaatacattctggtttctcggggactc
tcaaaggaattataatgtcgattatataatgatctggaatagattataat
tcccttgagggtccccgagaaacaagaatgcattgcatttatctaaacgc
gatatcgtctattagcaAACATCTATTTTACGCTCTTGTGTAGCAGGGGG
ggagtaaaatctcagacataatgacgtttgcTACGGTGgcggtgtgacga
aaaatcgttactacccagggtagttaaatactaaaatgggtggtatatat
gtgttaaatgttgaaaagattttactacctgggtagttaaaactggtaaa
attagcaaattttagctatttttgtaattcttttaattttttggatgact
tttctgaaaaaaatcagaaaatgtttataatttgaaaaaattttctgttg
gaaagttgtttgctgctaagtgcataaaattaaaaacttgccctgatcta
aggggcgCCCTATGAAGTGACACGATTCACTACCTAGGCCGCTGGTCTAA
AATTAAATTAGGCTTTGGCATTCGATCAACAATCAATATTTACTGTTTCT
AAACTTCTTCCCTTTCAGATTTTGATATCAGGTGCACGTGTAGCGGTTGA
TTTCGAAGATTTGAAGCAAAATACCAATTATTCTGGTAAGTGATTGATAA
TTAATTCAAAAAGTTTCAGAATCATGCGACATGTTTCAGGCATTGAGTCT
CAAGCCCGAAGTGCTAGAGgtgagactcctggatgggaaatgaaaccact
tatttcccatccagaacgcccgcgcgtagtttttacacaaacgccggatg
cTGAACAAAAATTGTaatcctccaaaacaaaggaactgctagatacaatc
cgtcgtcacgattacggcgcgttctaggcgcgttttggatgggaaatgag
tggcttcaatttctatTGCCTGAGCAGGGtcaaagtttcgcctctagccc
ttcgggcttgaaactcaatggcttAAGGGTCCCCCTCTTAAGTCTCTCTC
TAAAGGGCTGGTAAATTAAATTTCAtgaaaagatttgtaaaaagattcga
attatgaaAATCATTCTAAAATGATTGTTTACCGAAAAAAAAGATAATGA
CAACCAAATCGTTGCATtcgatttttcctttttttcattcTCTTCAAAGA
TCACGTCTTAGAAtcttagatttttgaaaaaaaagaaaccctTCACTAAG
TTGATTTGCGTTAAATCTATTAGGTCGTAAAAACAAACAGGTGTGAATAA
CGTTATACTTGACCTCGTTACtgagtgtttttgaaaaaaaatacacgttt
atttataagaactttaagTTATAAGCCTAATAATGTtctaaaatatcttt
attttttaactattttgtgagtatatttttgtaatttccttAGAATTGAA
TgctttagagtccacaaagctttaaaatgttcttatattgcTCTTATAAG
TTTCGGctatcgaagtcttatgttcctATAGAGTTTGTTCCTATatcttg
tttttaatattttggccatcaaagcgtTTTGttcttctcataaaaaaacg
tgtaattaatCCAATAAGAAAGCTGTATTTTCCGCATCATCCgatgaaaa
ttttctatttgattTCCAGGCTCTTTCAAAGAAGAGGATTCATACATCAA
AGACTTTTGGGCCATCATTGAAACATTAACGGATAAACAAAAACAGCAGT
TCTTGAAATTCGTCACCAGTTGTTCCAGACCTCCTCTACTCGGTTTTTCG
GTGAGTAAATCATtggaatttcttttatttttactaATAAATGGCATTGA
AACGTAATTTGATTATCAGACAGATAGCTTTGTAGAAATTCAAATAACTA
CATAAGAGCAAAACTATGCCGTTTCTCAACGGTTCAACTTTATTGTCCAC
TGAAGAAAAACCTTATCAGTGCTATAATGCAGTTTTTATTTTGGTGCAAT
AGCATACCGtggtgaatctaaaaatagacatcgaTTTTTCCGTTTGACAA
AAATTCTATCCCATCACACTTTGCGTTTATTACGCTTACACGCAAATTAC
ACTcgattacaaagaaaaagtaataacattCACGACTTTTGAtttaagac
gaaaaggattgtgggattaaatttcggtcaaatgataGAAGTAACAATCA
CGACGTTTGCATAACGAAGCGCTATTTACCCAACAAAATCATCctttttc
aagtgttttgaggCGAATTTTATTGTCTTTGCTACTGTTTCGAAAAAGTG
GAATAGATGTTAtgcgtagaaaaaaaaatatcgtGGCATTTAGCGTAGTC
AAGAGAGAAAGCAGATTTTGTTTCCCTCCCCCTGACCCTCCCGGTAATGC
TATTGAAGACAAGATAAGCGCAATTAACAATGAAAACCGTTGATTGTTTC
ATGGCAACTGAAATTGCCCATTTTTTAGATATAATTTATAATTGGTTTTT
CTTACGGCACCGCCAATCCTTTCACTTTATTCTCGACTACAATCCATTTC
TCATAATGGATTCATATTTCTGTTTGAAGGcacagaaaaataaataagaa
gagaaataaaggagaaaataagaaaataaatttttgcgagGAGAAATTCG
CCTAAATTACTTTTCGCCAATTTTAATTCGCCAAGGTTAATTCTCGACTA
ATTTTAATGATATTGTAATTTGGTCCAGATTTTTCCTTATACTAAAAATT
CCTTTTCGCCAAAATTTAGTTATCCAAAATTAATACCTAGGCCTAGttta
atcatttttgatttggttcagatttttcttaagaaattccttttttttca
gctaaaattttcataaattaacgGGTAACTTGCAAAATTGATTGGCAGAT
TCTCGCAAAAAAGTTGCACGAAAATTGGTGAATTTGCCCGTTCGTCAAAA
TTTCTTCGCTTAAGGAAGTTGATTGAACACGATTAAAGGGTTTTTTATTA
TAGTCCTTCTTGGTATttgtagcctggagatccatgctatgatttcttat
tttatatactgatggcaaaatatatagcatggtttgggctgagagtttga
atttcccagatcctaataacggttgaaaacacagccaatcaaattttgtt
attcttttactggtcatacttttttaaagaaagcgcaagttccgaaattt
ggtttttattttagtaaaagTAAGGACAGCGGTAAATTCGAATTTCTCAC
TGTAaatttttgaggcagaaatctgcctcacaggtcagacccgtcctgta
tacatcagattataaaaaaatacaggacggttctcctgtctatGGTATTT
GTTGCTACAGTCAACTGCAGTAATGaatttatttctcttttttgcGAAAA
GAAAATGATATTTGCTTTGAAACATGATTCNTCCTGTCTATGGTATTTGT
TGCTACAGTCAACTGCAGTAATGaatttatttctcttttttgcgaaaaga
aaattatatttgctttgaaacaTGATTCTTTTTCAAGATCCTTATTCTAA
AGACGTCTTCAAAAACAgatgttttcaattttgttttaacaAAGTAAAGT
GactttataacatttttttcctCTTCTCAATCTTTCCAGAATCTTTTTTC
ATGAAGATTTATGAAAACCGCAACATATCATCTAGGCTCATGTTACATCT
TAGAAAAAAGTTTCCCTCGCTTTTTAACGGATAATTTGGTTAGCGGATAG
CTTGGAAGCCAGACTTATCCTAGAAATTTATCACCCTTTATTCTTCTCCT
TAGAAGCTGAATACTAAGCAGAGGGGGTATCAAcgttgagtttaaagccc
gaagggctagagtagaatctctaacctttcccaggcacgaaacagtgaag
ccacttatttcccatccataacgggccgcaatcatgacgacggattatAT
CTAGCAGTCCTTTGTTTTTAAGTAcggcattttttgaaatctagcgatgg
attttactttcaatccggcgtttgtctAAAagccacgcgcgggcgttctg
gatgggagaTGAAGTAGCTTCATTTCTCATCCAAAAGTTTCTACTCTAGC
CCCTTCGGTGCTTTAAACTCAACGGGTATCAAGTATGTTTCTCAATCATT
TGGCAAAACCTGGCTAGTGGTTGAACCCACGATCTTGTATGCTGCATCCC
TGAAATAGTGATGATAATCATCAGAATCGTAAAGCGTTTTCGCTCATTAA
GTTTTATAAGTTCGTATTAAACGTGTTAAAAATAGATGGAATAGGGTAAC
CCAGTAGTCTAGGACTCAGCAAACTGACTCGGGTAGCTATGAACTGAAAG
GGACATTAGGAggagccgggtcataccaaagattcccaaaatggtacttg
atgcctctctgcttgatgctcagcaaccaTTTGtcaagtggagaaatcca
gggaaaggagtggcaccctcccctaccttcgggtagacagctagagaaaa
gggagccttcggatCGCCTCTGACTGTGGTCGCCGACTTACTTACTACTA
CTATTCTTTTATCAGGAGCTGAACCCGAAATTCTGTATTCACAGCGGTGG
TGAAGTCGATCGTTTGCCAACAGCCAGTACGTGCATGAACTTACTCAAAC
TTCCCATCTATAACTCAATCGGACTTTTACGAAAACGCTTAATATATGCT
ATCGAAGCGGAAGCTGGTTTTGAACTTAGTTGATGTCTTACGTTGAATAT
TAAATAGAGTTCAAGTGTGGTTTGAGAGGATTAACGCAACTGAACCGGCA
AAAGGAGTCTAAAATGATGCACGAACTTACTCGATCAAGCCTGAAGCTac
tcaaattataaaaatctcGTTGAACTTTAACGAGAGAGACGTTGATATGA
TAACGCTTAACGCTTATCGTAACAAAAGTTGGATTTAAGTCAATAAAAAG
CCTGGGAATGAGCTAAAGGAAACCCAATCAAAGTCGTTCAGTTGCACTAA
TTATACGCCG

Coding sequence (CDS) from alignment at scaffold_358:146928..156537+

>TCONS_00061381 ID=TCONS_00061381|Name=TCONS_00061381|organism=Clytia hemisphaerica|type=CDS|length=6384bp|location=Sequence derived from alignment at scaffold_358:146928..156537+ (Clytia hemisphaerica)
CATTTTCTTGGTCGGATGTTGGGAAAGGTCATTTATGAATCAATGATGGT
CGAATTGCCGTTAGCCGATTTTTTCCTTTGTAAACTTCTCAACAAATATG
GCGCCGATATTGACATTCATCATTTAGAATCACTTGACCCAGATCTTCAC
AGGAATTTATTCGAGTTGAAGAATTATAGTGGAGATGCGGACGACCTCAG
TTTAAATTTCGCTATCATCAAAAATCAATATGGTGAAACAGAGGTGGTAG
AGCTGAAACCAGGCGGAAAAGATATATGCGTGGATAAttcaaataaaata
gaatacaTTCATCTTATGGCTGACTACAAACTTAACAAGCagttGAGAAA
TCAGTGCAATGCATTCAGAGCTGGATTATCTGACGTCATCGACTTGAAAT
GGTTACGGATGTTTAGTCATAATGAACTCCAGATTTTGATATCAGGTGCA
CGTGTAGCGGTTGATTTCGAAGATTTGAAGCAAAATACCAATTATTCTGG
CTCTTTCAAAGAAGAGGATTCATACATCAAAGACTTTTGGGCCATCATTG
AAACATTAACGGATAAACAAAAACAGCAGTTCTTGAAATTCGTCACCAGT
TGTTCCAGACCTCCTCTACTCGGTTTTTCGGAGCTGAACCCGAAATTCTG
TATTCACAGCGGTGGTGAAGTCGATCGTTTGCCAACAGCCAGTACGTGCA
TGAACTTACTCAAACTTCCCATCTATAACTCAATCGGACTTTTACGAAAA
CGCTTAATATATGCTATCGAAGCGGAAGCTGGTTTTGAACTTAGTTGACA
TTTTCTTGGTCGGATGTTGGGAAAGGTCATTTATGAATCAATGATGGTCG
AATTGCCGTTAGCCGATTTTTTCCTTTGTAAACTTCTCAACAAATATGGC
GCCGATATTGACATTCATCATTTAGAATCACTTGACCCAGATCTTCACAG
GAATTTATTCGAGTTGAAGAATTATAGTGGAGATGCGGACGACCTCAGTT
TAAATTTCGCTATCATCAAAAATCAATATGGTGAAACAGAGGTGGTAGAG
CTGAAACCAGGCGGAAAAGATATATGCGTGGATAAttcaaataaaataga
atacaTTCATCTTATGGCTGACTACAAACTTAACAAGCagttGAGAAATC
AGTGCAATGCATTCAGAGCTGGATTATCTGACGTCATCGACTTGAAATGG
TTACGGATGTTTAGTCATAATGAACTCCAGATTTTGATATCAGGTGCACG
TGTAGCGGTTGATTTCGAAGATTTGAAGCAAAATACCAATTATTCTGGCT
CTTTCAAAGAAGAGGATTCATACATCAAAGACTTTTGGGCCATCATTGAA
ACATTAACGGATAAACAAAAACAGCAGTTCTTGAAATTCGTCACCAGTTG
TTCCAGACCTCCTCTACTCGGTTTTTCGGAGCTGAACCCGAAATTCTGTA
TTCACAGCGGTGGTGAAGTCGATCGTTTGCCAACAGCCAGTACGTGCATG
AACTTACTCAAACTTCCCATCTATAACTCAATCGGACTTTTACGAAAACG
CTTAATATATGCTATCGAAGCGGAAGCTGGTTTTGAACTTAGTTGACATT
TTCTTGGTCGGATGTTGGGAAAGGTCATTTATGAATCAATGATGGTCGAA
TTGCCGTTAGCCGATTTTTTCCTTTGTAAACTTCTCAACAAATATGGCGC
CGATATTGACATTCATCATTTAGAATCACTTGACCCAGATCTTCACAGGA
ATTTATTCGAGTTGAAGAATTATAGTGGAGATGCGGACGACCTCAGTTTA
AATTTCGCTATCATCAAAAATCAATATGGTGAAACAGAGGTGGTAGAGCT
GAAACCAGGCGGAAAAGATATATGCGTGGATAAttcaaataaaatagaat
acaTTCATCTTATGGCTGACTACAAACTTAACAAGCagttGAGAAATCAG
TGCAATGCATTCAGAGCTGGATTATCTGACGTCATCGACTTGAAATGGTT
ACGGATGTTTAGTCATAATGAACTCCAGATTTTGATATCAGGTGCACGTG
TAGCGGTTGATTTCGAAGATTTGAAGCAAAATACCAATTATTCTGGCTCT
TTCAAAGAAGAGGATTCATACATCAAAGACTTTTGGGCCATCATTGAAAC
ATTAACGGATAAACAAAAACAGCAGTTCTTGAAATTCGTCACCAGTTGTT
CCAGACCTCCTCTACTCGGTTTTTCGGAGCTGAACCCGAAATTCTGTATT
CACAGCGGTGGTGAAGTCGATCGTTTGCCAACAGCCAGTACGTGCATGAA
CTTACTCAAACTTCCCATCTATAACTCAATCGGACTTTTACGAAAACGCT
TAATATATGCTATCGAAGCGGAAGCTGGTTTTGAACTTAGTTGACATTTT
CTTGGTCGGATGTTGGGAAAGGTCATTTATGAATCAATGATGGTCGAATT
GCCGTTAGCCGATTTTTTCCTTTGTAAACTTCTCAACAAATATGGCGCCG
ATATTGACATTCATCATTTAGAATCACTTGACCCAGATCTTCACAGGAAT
TTATTCGAGTTGAAGAATTATAGTGGAGATGCGGACGACCTCAGTTTAAA
TTTCGCTATCATCAAAAATCAATATGGTGAAACAGAGGTGGTAGAGCTGA
AACCAGGCGGAAAAGATATATGCGTGGATAAttcaaataaaatagaatac
aTTCATCTTATGGCTGACTACAAACTTAACAAGCagttGAGAAATCAGTG
CAATGCATTCAGAGCTGGATTATCTGACGTCATCGACTTGAAATGGTTAC
GGATGTTTAGTCATAATGAACTCCAGATTTTGATATCAGGTGCACGTGTA
GCGGTTGATTTCGAAGATTTGAAGCAAAATACCAATTATTCTGGCTCTTT
CAAAGAAGAGGATTCATACATCAAAGACTTTTGGGCCATCATTGAAACAT
TAACGGATAAACAAAAACAGCAGTTCTTGAAATTCGTCACCAGTTGTTCC
AGACCTCCTCTACTCGGTTTTTCGGAGCTGAACCCGAAATTCTGTATTCA
CAGCGGTGGTGAAGTCGATCGTTTGCCAACAGCCAGTACGTGCATGAACT
TACTCAAACTTCCCATCTATAACTCAATCGGACTTTTACGAAAACGCTTA
ATATATGCTATCGAAGCGGAAGCTGGTTTTGAACTTAGTTGACATTTTCT
TGGTCGGATGTTGGGAAAGGTCATTTATGAATCAATGATGGTCGAATTGC
CGTTAGCCGATTTTTTCCTTTGTAAACTTCTCAACAAATATGGCGCCGAT
ATTGACATTCATCATTTAGAATCACTTGACCCAGATCTTCACAGGAATTT
ATTCGAGTTGAAGAATTATAGTGGAGATGCGGACGACCTCAGTTTAAATT
TCGCTATCATCAAAAATCAATATGGTGAAACAGAGGTGGTAGAGCTGAAA
CCAGGCGGAAAAGATATATGCGTGGATAAttcaaataaaatagaatacaT
TCATCTTATGGCTGACTACAAACTTAACAAGCagttGAGAAATCAGTGCA
ATGCATTCAGAGCTGGATTATCTGACGTCATCGACTTGAAATGGTTACGG
ATGTTTAGTCATAATGAACTCCAGATTTTGATATCAGGTGCACGTGTAGC
GGTTGATTTCGAAGATTTGAAGCAAAATACCAATTATTCTGGCTCTTTCA
AAGAAGAGGATTCATACATCAAAGACTTTTGGGCCATCATTGAAACATTA
ACGGATAAACAAAAACAGCAGTTCTTGAAATTCGTCACCAGTTGTTCCAG
ACCTCCTCTACTCGGTTTTTCGGAGCTGAACCCGAAATTCTGTATTCACA
GCGGTGGTGAAGTCGATCGTTTGCCAACAGCCAGTACGTGCATGAACTTA
CTCAAACTTCCCATCTATAACTCAATCGGACTTTTACGAAAACGCTTAAT
ATATGCTATCGAAGCGGAAGCTGGTTTTGAACTTAGTTGACATTTTCTTG
GTCGGATGTTGGGAAAGGTCATTTATGAATCAATGATGGTCGAATTGCCG
TTAGCCGATTTTTTCCTTTGTAAACTTCTCAACAAATATGGCGCCGATAT
TGACATTCATCATTTAGAATCACTTGACCCAGATCTTCACAGGAATTTAT
TCGAGTTGAAGAATTATAGTGGAGATGCGGACGACCTCAGTTTAAATTTC
GCTATCATCAAAAATCAATATGGTGAAACAGAGGTGGTAGAGCTGAAACC
AGGCGGAAAAGATATATGCGTGGATAAttcaaataaaatagaatacaTTC
ATCTTATGGCTGACTACAAACTTAACAAGCagttGAGAAATCAGTGCAAT
GCATTCAGAGCTGGATTATCTGACGTCATCGACTTGAAATGGTTACGGAT
GTTTAGTCATAATGAACTCCAGATTTTGATATCAGGTGCACGTGTAGCGG
TTGATTTCGAAGATTTGAAGCAAAATACCAATTATTCTGGCTCTTTCAAA
GAAGAGGATTCATACATCAAAGACTTTTGGGCCATCATTGAAACATTAAC
GGATAAACAAAAACAGCAGTTCTTGAAATTCGTCACCAGTTGTTCCAGAC
CTCCTCTACTCGGTTTTTCGGAGCTGAACCCGAAATTCTGTATTCACAGC
GGTGGTGAAGTCGATCGTTTGCCAACAGCCAGTACGTGCATGAACTTACT
CAAACTTCCCATCTATAACTCAATCGGACTTTTACGAAAACGCTTAATAT
ATGCTATCGAAGCGGAAGCTGGTTTTGAACTTAGTTGACATTTTCTTGGT
CGGATGTTGGGAAAGGTCATTTATGAATCAATGATGGTCGAATTGCCGTT
AGCCGATTTTTTCCTTTGTAAACTTCTCAACAAATATGGCGCCGATATTG
ACATTCATCATTTAGAATCACTTGACCCAGATCTTCACAGGAATTTATTC
GAGTTGAAGAATTATAGTGGAGATGCGGACGACCTCAGTTTAAATTTCGC
TATCATCAAAAATCAATATGGTGAAACAGAGGTGGTAGAGCTGAAACCAG
GCGGAAAAGATATATGCGTGGATAAttcaaataaaatagaatacaTTCAT
CTTATGGCTGACTACAAACTTAACAAGCagttGAGAAATCAGTGCAATGC
ATTCAGAGCTGGATTATCTGACGTCATCGACTTGAAATGGTTACGGATGT
TTAGTCATAATGAACTCCAGATTTTGATATCAGGTGCACGTGTAGCGGTT
GATTTCGAAGATTTGAAGCAAAATACCAATTATTCTGGCTCTTTCAAAGA
AGAGGATTCATACATCAAAGACTTTTGGGCCATCATTGAAACATTAACGG
ATAAACAAAAACAGCAGTTCTTGAAATTCGTCACCAGTTGTTCCAGACCT
CCTCTACTCGGTTTTTCGGAGCTGAACCCGAAATTCTGTATTCACAGCGG
TGGTGAAGTCGATCGTTTGCCAACAGCCAGTACGTGCATGAACTTACTCA
AACTTCCCATCTATAACTCAATCGGACTTTTACGAAAACGCTTAATATAT
GCTATCGAAGCGGAAGCTGGTTTTGAACTTAGTTGACATTTTCTTGGTCG
GATGTTGGGAAAGGTCATTTATGAATCAATGATGGTCGAATTGCCGTTAG
CCGATTTTTTCCTTTGTAAACTTCTCAACAAATATGGCGCCGATATTGAC
ATTCATCATTTAGAATCACTTGACCCAGATCTTCACAGGAATTTATTCGA
GTTGAAGAATTATAGTGGAGATGCGGACGACCTCAGTTTAAATTTCGCTA
TCATCAAAAATCAATATGGTGAAACAGAGGTGGTAGAGCTGAAACCAGGC
GGAAAAGATATATGCGTGGATAAttcaaataaaatagaatacaTTCATCT
TATGGCTGACTACAAACTTAACAAGCagttGAGAAATCAGTGCAATGCAT
TCAGAGCTGGATTATCTGACGTCATCGACTTGAAATGGTTACGGATGTTT
AGTCATAATGAACTCCAGATTTTGATATCAGGTGCACGTGTAGCGGTTGA
TTTCGAAGATTTGAAGCAAAATACCAATTATTCTGGCTCTTTCAAAGAAG
AGGATTCATACATCAAAGACTTTTGGGCCATCATTGAAACATTAACGGAT
AAACAAAAACAGCAGTTCTTGAAATTCGTCACCAGTTGTTCCAGACCTCC
TCTACTCGGTTTTTCGGAGCTGAACCCGAAATTCTGTATTCACAGCGGTG
GTGAAGTCGATCGTTTGCCAACAGCCAGTACGTGCATGAACTTACTCAAA
CTTCCCATCTATAACTCAATCGGACTTTTACGAAAACGCTTAATATATGC
TATCGAAGCGGAAGCTGGTTTTGAACTTAGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038515XLOC_038515Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061381-exon-scaffold_358-1491911889:146928..146955TCONS_00061381-exon-scaffold_358-1491911889:146928..146955Clytia hemisphaericaexon
TCONS_00061381-exon-scaffold_358-1510915933:146928..146955TCONS_00061381-exon-scaffold_358-1510915933:146928..146955Clytia hemisphaericaexon
TCONS_00061381-exon-scaffold_358-1575043694:146928..146955TCONS_00061381-exon-scaffold_358-1575043694:146928..146955Clytia hemisphaericaexon
TCONS_00061381-exon-scaffold_358-1491911889:148060..148184TCONS_00061381-exon-scaffold_358-1491911889:148060..148184Clytia hemisphaericaexon
TCONS_00061381-exon-scaffold_358-1510915933:148060..148184TCONS_00061381-exon-scaffold_358-1510915933:148060..148184Clytia hemisphaericaexon
TCONS_00061381-exon-scaffold_358-1575043694:148060..148184TCONS_00061381-exon-scaffold_358-1575043694:148060..148184Clytia hemisphaericaexon
TCONS_00061381-exon-scaffold_358-1491911889:148364..148454TCONS_00061381-exon-scaffold_358-1491911889:148364..148454Clytia hemisphaericaexon
TCONS_00061381-exon-scaffold_358-1510915933:148364..148454TCONS_00061381-exon-scaffold_358-1510915933:148364..148454Clytia hemisphaericaexon
TCONS_00061381-exon-scaffold_358-1575043694:148364..148454TCONS_00061381-exon-scaffold_358-1575043694:148364..148454Clytia hemisphaericaexon
TCONS_00061381-exon-scaffold_358-1491911889:149309..149407TCONS_00061381-exon-scaffold_358-1491911889:149309..149407Clytia hemisphaericaexon
TCONS_00061381-exon-scaffold_358-1510915933:149309..149407TCONS_00061381-exon-scaffold_358-1510915933:149309..149407Clytia hemisphaericaexon
TCONS_00061381-exon-scaffold_358-1575043694:149309..149407TCONS_00061381-exon-scaffold_358-1575043694:149309..149407Clytia hemisphaericaexon
TCONS_00061381-exon-scaffold_358-1491911889:150938..151027TCONS_00061381-exon-scaffold_358-1491911889:150938..151027Clytia hemisphaericaexon
TCONS_00061381-exon-scaffold_358-1510915933:150938..151027TCONS_00061381-exon-scaffold_358-1510915933:150938..151027Clytia hemisphaericaexon
TCONS_00061381-exon-scaffold_358-1575043694:150938..151027TCONS_00061381-exon-scaffold_358-1575043694:150938..151027Clytia hemisphaericaexon
TCONS_00061381-exon-scaffold_358-1491911889:152146..152212TCONS_00061381-exon-scaffold_358-1491911889:152146..152212Clytia hemisphaericaexon
TCONS_00061381-exon-scaffold_358-1510915933:152146..152212TCONS_00061381-exon-scaffold_358-1510915933:152146..152212Clytia hemisphaericaexon
TCONS_00061381-exon-scaffold_358-1575043694:152146..152212TCONS_00061381-exon-scaffold_358-1575043694:152146..152212Clytia hemisphaericaexon
TCONS_00061381-exon-scaffold_358-1491911889:153197..153327TCONS_00061381-exon-scaffold_358-1491911889:153197..153327Clytia hemisphaericaexon
TCONS_00061381-exon-scaffold_358-1510915933:153197..153327TCONS_00061381-exon-scaffold_358-1510915933:153197..153327Clytia hemisphaericaexon
TCONS_00061381-exon-scaffold_358-1575043694:153197..153327TCONS_00061381-exon-scaffold_358-1575043694:153197..153327Clytia hemisphaericaexon
TCONS_00061381-exon-scaffold_358-1491911889:156093..156537TCONS_00061381-exon-scaffold_358-1491911889:156093..156537Clytia hemisphaericaexon
TCONS_00061381-exon-scaffold_358-1510915933:156093..156537TCONS_00061381-exon-scaffold_358-1510915933:156093..156537Clytia hemisphaericaexon
TCONS_00061381-exon-scaffold_358-1575043694:156093..156537TCONS_00061381-exon-scaffold_358-1575043694:156093..156537Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061381-proteinTCONS_00061381-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_358supercontigscaffold_358:146928..156537 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.21986	4.74852	3.61388	4.21555	15.8927	9.94226	13.5206	14.9727	9.68961	11.4469	12.2714	7.63072	7.94669	7.71572	8.43459	9.675	11.3044	12.7202	6.52485	9.24027	8.70406	10.5945	8.49219	10.9625	17.8812	15.9977	5.55485	5.74864	7.13065	7.12618
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000569HECT_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004842 ubiquitin-protein transferase activity
Blast
[Close]
BLAST of TCONS_00061381 vs. Swiss-Prot (Human)
Match: UBE3C (Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UBE3C PE=1 SV=3)

HSP 1 Score: 343.199 bits (879), Expect = 7.001e-108
Identity = 161/266 (60.53%), Postives = 206/266 (77.44%), Query Frame = 2 
Query:    2 HFLGRMLGKVIYESMMVELPLADFFLCKLLNKYGADIDIHHLESLDPDLHRNLFELKNYSGDADDLSLNFAIIKNQYGETEVVELKPGGKDICVDNSNKIEYIHLMADYKLNKQLRNQCNAFRAGLSDVIDLKWLRMFSHNELQILISGARVAVDFEDLKQNTNYSGSFKEEDSYIKDFWAIIETLTDKQKQQFLKFVTSCSRPPLLGFSELNPKFCIHSGG-EVDRLPTASTCMNLLKLPIYNSIGLLRKRLIYAIEAEAGFELS 796
            +FLGRMLGK +YE+M+VELP A FFL KLL    AD+DIHHL SLDP++++NL  LK+Y  D ++L LNF ++ N  GE +VVELK GGKDI V ++N+I YIHL+ADY+LN+Q+R  C AFR GL++V+ L+WLRMF   E+Q+LISGA+V +  EDLK  TNYSG +  +   IK FW ++E  TD++K++ LKFVTSCSRPPLLGF EL P FCIH+GG +++RLPTASTCMNLLKLP +    LLR +L+YAIE  AGFELS
Sbjct:  819 YFLGRMLGKALYENMLVELPFAGFFLSKLLGT-SADVDIHHLASLDPEVYKNLLFLKSYEDDVEELGLNFTVVNNDLGEAQVVELKFGGKDIPVTSANRIAYIHLVADYRLNRQIRQHCLAFRQGLANVVSLEWLRMFDQQEIQVLISGAQVPISLEDLKSFTNYSGGYSADHPVIKVFWRVVEGFTDEEKRKLLKFVTSCSRPPLLGFKELYPAFCIHNGGSDLERLPTASTCMNLLKLPEFYDETLLRSKLLYAIECAAGFELS 1083
The following BLAST results are available for this feature:
BLAST of TCONS_00061381 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBE3C7.001e-10860.53Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UB... [more]
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