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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061384 ID=TCONS_00061384|Name=TCONS_00061384|organism=Clytia hemisphaerica|type=transcript|length=3188bpRun BLAST on NCBI protein sequence of TCONS_00061384-protein >TCONS_00061384-protein ID=TCONS_00061384-protein|Name=TCONS_00061384-protein|organism=Clytia hemisphaerica|type=polypeptide|length=713bp MSMSSNSPLGESIHNANEALSLCLSNKFNQAKDFIEPKNGDLMYHAISKGRun BLAST on NCBI transcript from alignment at scaffold_358:167467..213500+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061384 ID=TCONS_00061384|Name=TCONS_00061384|organism=Clytia hemisphaerica|type=transcript|length=46034bp|location=Sequence derived from alignment at scaffold_358:167467..213500+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_358:167467..213500+ >TCONS_00061384 ID=TCONS_00061384|Name=TCONS_00061384|organism=Clytia hemisphaerica|type=CDS|length=40698bp|location=Sequence derived from alignment at scaffold_358:167467..213500+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061384 vs. Swiss-Prot (Human)
Match: TT39B (Tetratricopeptide repeat protein 39B OS=Homo sapiens GN=TTC39B PE=1 SV=4) HSP 1 Score: 381.719 bits (979), Expect = 7.647e-118 Identity = 215/547 (39.31%), Postives = 333/547 (60.88%), Query Frame = 1
Query: 319 ALSLCLSNKFNQAKDFIEPKNGDLMYHAISKGTISYLQAVLTYEPELIALAYEKVKDASILCDKYRKKYSWGETIQSFVSKQSYNDFTEEELHAELCYAECLLEWALLTFIQDENLMSFIKGGLKIKNAYGIYRNCMTALEEKSKTLQLSHHRSDFESGVYMGIGTFNXXXXXXXXXXXXXXEWVGFSGDKLQGLQWLDKGYHLDGLRSPMCTVSLLGYHIVASPLLGIGDTDIPYVQVILDVYLKKFPESSIFLYFSGRLKQTQGLLDEALHEYEKSVSGNIDWQQVHHICYWEMMWCYSFKADWKKAAEFAEKLSTESKWSKSSYLYMQAAFLLMQQFENELNEPTAQKDTDFDEKISNILHDVAKHKQRIAGKSLPFEKFACCRVEKYKAT----GTLILPAMELIHIWNGFTMFSNHTETLNHFMKLIKAALQKLEKRNDTSKHGHDNISLCYLLQGICLRYLKQSHEAEESLARVAKCSASQFSSKMDSYFPAWASAEIGFMYKELGEDEKALKQLQHTLKNYSKYGLESRLHFKVHSGIEV 1947
AL+L LSNKF A + + P + MYHA+ TI LQAVLT+E + I +KDA C KYRKKY+ E+ S +S+ S +EEE+HAE+CYAECLL+ A LTF+QDEN+++FIKGGLKI+ +Y IY+ C++ L E K +FE GV +G G FNL+LSLLP R++RLLE++GFSG++ GL L +G +RS +C +++L +H S +LG G+ ++ + +L +L++FP S+ L++ R++ +G L+EA ++K +S +W+Q HH+CYWE+MW F+ +W +A +++ L ESKWSK++Y++++AA L M E+ + +E + + V KQRIAGKS+P EKFA + +Y A+ LILPA+E++++WNGF++ S + + + ++ A L+ +N S D+ L LL+G CL+ L++ +AE V + S+ K D Y + E+ +YK GE +KA+K L+ NY Y LESRLHF++ + + +
Sbjct: 142 ALNLFLSNKFTDALELLRPWAKESMYHALGYSTIVVLQAVLTFEQQDIQNGISAMKDALQTCQKYRKKYTVVESFSSLLSRGSLEQLSEEEMHAEICYAECLLQKAALTFVQDENMINFIKGGLKIRTSYQIYKECLSILHEIQKNKLQQEFFYEFEGGVKLGSGAFNLMLSLLPARIIRLLEFIGFSGNRELGLLQLREGASGRSMRSALCCLTILAFHTYISLILGTGEVNVAEAERLLAPFLQQFPNGSLVLFYHARIELLKGNLEEAQEVFQKCISVQEEWKQFHHLCYWELMWINVFQQNWMQAYYYSDLLCKESKWSKATYVFLKAAILSMLPEEDVVAT---------NENVVTLFRQVDSLKQRIAGKSIPTEKFAVRKARRYSASLPAPVKLILPALEMMYVWNGFSIVSKRKDLSENLLVTVEKAEAALQSQNFNS-FSVDDECLVKLLKGCCLKNLQRPLQAELCYNHVVE---SEKLLKYDHYLVPFTLFELASLYKSQGEIDKAIKFLETARNNYKDYSLESRLHFRIQAALHL 675 The following BLAST results are available for this feature:
BLAST of TCONS_00061384 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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