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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061385 ID=TCONS_00061385|Name=TCONS_00061385|organism=Clytia hemisphaerica|type=transcript|length=924bpRun BLAST on NCBI transcript from alignment at scaffold_358:180615..208704+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061385 ID=TCONS_00061385|Name=TCONS_00061385|organism=Clytia hemisphaerica|type=transcript|length=28090bp|location=Sequence derived from alignment at scaffold_358:180615..208704+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00061385 vs. Swiss-Prot (Human)
Match: TT39A (Tetratricopeptide repeat protein 39A OS=Homo sapiens GN=TTC39A PE=2 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 3.224e-67 Identity = 112/304 (36.84%), Postives = 189/304 (62.17%), Query Frame = 1
Query: 1 TRVLRLLEWVGFSGDKLQGLQWLDKGYHLDGLRSPMCTVSLLGYHIVASPLLGIGDTDIPYVQVILDVYLKKFPESSIFLYFSGRLKQTQGLLDEALHEYEKSVSGNIDWQQVHHICYWEMMWCYSFKADWKKAAEFAEKLSTESKWSKSSYLYMQAAFLLMQQFENELNEPTAQKDTDFDEKISNILHDVAKHKQRIAGKSLPFEKFACCRVEKYKATG--TLILPAMELIHIWNGFTMFSNHTETLNHFMKLIKAALQKLEKRNDTSKHGHDNISLCYLLQGICLRYLKQSHEAEESLARVA 906
TR+LRLLE+VGFSG+K GL L++G RS +C + LL YH + +LG G+ +I + +L YL ++P+ +IFL+F+GR++ +G +D A+ +E+ W+Q HH+CYWE+MWC+++K WK + +A+ LS E+ WSK++Y+YM+AA+L M F E ++P + + + + K +IAGKSLP EKFA + +Y ++ +L +PA+E+++IWNG+ + + + +++I A + LEK +++ D+ L LL+G+CL+YL + EAEE+ ++
Sbjct: 239 TRILRLLEFVGFSGNKDYGLLQLEEGASGHSFRSVLCVMLLLCYHTFLTFVLGTGNVNIEEAEKLLKPYLNRYPKGAIFLFFAGRIEVIKGNIDAAIRRFEECCEAQQHWKQFHHMCYWELMWCFTYKGQWKMSYFYADLLSKENCWSKATYIYMKAAYLSM--FGKEDHKPFGDDEVELFRAVPGL-------KLKIAGKSLPTEKFAIRKSRRYFSSNPISLPVPALEMMYIWNGYAVIGKQPKLTDGILEIITKAEEMLEK-GPENEYSVDDECLVKLLKGLCLKYLGRVQEAEENFRSIS 532 The following BLAST results are available for this feature:
BLAST of TCONS_00061385 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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