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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061388 ID=TCONS_00061388|Name=TCONS_00061388|organism=Clytia hemisphaerica|type=transcript|length=883bp
CTCCAGCTTTTTTCGGGCAGCGTTCCGGTTGGGATACGCTTTCAATTCAT
CCAATCGGGCTAAGTTTGGTTTCCCGATAGAGTCAGTTCAAGGTAAATTC
TCGTATCTACAGAATCTATCGGAAGCCGGCAAACTGATATAGCATTACAT
CACTGAAACTGGTTCAATAGGAGGCTGTTCTATAATGGTAGTGAGAGTAG
TGTGTTGGAATTAAAGTAATGATTTCTCAGGAGGACCTAGCTCGTTCCGG
ACCAGACCAGGGAGACAAGAGAGGCAGCGCTGAGCTCTACCCCCATGAAT
ATAGACAACATGGACATAGCTGTCAAGAGTTAAATATGTTGTATATTATC
AGCCAAGTTGTATGTGTTTACATCTACTGATGACAATGAACATTATGATG
CAAGCAAACATGGCCATTATTATTCAATAAGAAGAAGGTGCAGATCCTTT
GGAGAGCGATGTTACGATGAACAGCCAATCACCGAGCTCAGGAAAGAAGA
ACTTTGAAGACCGATGTAATTTTTCTACAACTCGCCACAGATCACTGTCC
TCTTCGATTGCATTCACCGACGCCAATAAAGTGTTCAAAGTTTCAAATTG
AGATAGATACGAGATTTTACCATGACCGCCCTCGATATGTGTCAAAagca
attcaatatggctgccaaaGCGGTGCTTTTTCGTTCGTTCTGTGTTTATC
TCTTGCCAGCTTTTATTTATACAATCATTATATTTTGTTGAAAtggcttt
taaacttataactaaggaagatacaacactggagttagattataaagatg
ttcttttctttaaagtatgaagattttaacttatttgctcaagttttttc
ctgtattgtgagttatttttttacctGATAGAC Run BLAST on NCBI transcript from alignment at scaffold_358:226346..236437+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061388 ID=TCONS_00061388|Name=TCONS_00061388|organism=Clytia hemisphaerica|type=transcript|length=10092bp|location=Sequence derived from alignment at scaffold_358:226346..236437+ (Clytia hemisphaerica)
CTCCAGCTTTTTTCGGGCAGCGTTCCGGTTGGGATACGCTTTCAATTCAT
CCAATCGGGCTAAGTTTGGTTTCCCGATAGAGTCAGTTCAAGGTAAATTC
TCGTATCTACAGAATCTATCGGAAGCCGGCAAACTGATATAGCATTACAT
CACTGAAACTGGTTCAATAGGAGGCTGTTCTATAATGGTAGTGAGAGTAG
TGTGTTGGAATTAAAGTAATGATTTCTCAGGAGGACCTAGCTCGTTCCGG
ACCAGACCAGGGAGACAAGAGAGGCAGCGCTGAGCTCTACCCCCATGAAT
ATAGACAACATGGACATAGCTGTCAAGAGTTAAATATGTTGTATATTATC
AGCCAAGTTGTATGTGTTTACATCTACTGATGACAATGAACATTATGATG
CAAGCAAACATGGCCATTATTATTCAATAAGAAGAAGGTAAAATAACACA
ACCACAATCATTTACATTGTCATTACTCATAACTAAATATAAACTATGGA
CTCATGTCTGATGATTAGTATAaataggaaaaattatttttgtttgtaaG
ACTTTCTTGACTTGGCCACAGCTTCCGTTCACTCCGACCATGATTATAAT
AATCGCGTCACACAGCATgatgttttgacatttttaaccaatgaaatcat
ttgtttatgCCTCACTAAAGGTCTTTCAAGATTACAACACAAAATAAAAT
GGGGGTCAACATgaactcccggggggggggcagctgggcaaaaggaccga
cgggtatgtgcgggtcctactaagggtaccttttccaatatgtttaaaat
gcactgtaagggtcggaacaactagagatgcactgtaagggtagaaattt
cagaaaattcttgaaaaatctagatattttgaccaaaaatgctaaaattt
tgaccattttttgcacgaaagggatcgaaaatttggggaaaaatgcactc
taagggtatgattttcactgatttttgctgcactgtaagggtgcaatttt
aaaagccatttttttgcccgcacataccgtcagtccgcaaacccagtgcc
ccccccccgggcatgaACTTCAAAGCCCGCTGCAGGGAAGGGAAATGGTT
TTGACGAACCAAGCAAATATATATATACAATAATAagccaggggatgtca
atcgaacaattcgattgtcgaatcaattgaacaattcgattgtcgaatca
ATGGAACTCAGTCAAATTCAATCGAACTGATCGATCCAACTGATCGATCG
AATCGATCGAACCCAATCGAGCTGATCGATCGGACAATTGAACTCAATCA
AATATTCGTTAAATAAACTCTAATTCGTTAAATGTGGTTGTGATTCATTT
TGTtgattgggctattccatttttaaaccatacaggggtattgacgaact
ggGGGTCTGaaccttgattttccaaggggtttttgttcttttttcagatt
ttccaagggggatATTAAAGGTTTCCGGGGGGTTCTCTCCTCCTATTCTG
ACATCAATAGTTATTTTCcaggccctttttcacaaaatttcactttccag
gggGTGTCAACCCCTATTTCCAGGGGATAAAttgttatccaaaatttcca
ggggggttaatgaaaaaagtttgtcaatacccctgtacaatttttttttt
ggaatagctcATTGGGTTCGATTGATTTGATCAATcagttcgattgagtt
cgattgactcgacaatcaaatttttcaattgacTTCGAtcacaagatata
ttgtactatttttaaccaatcaaactAGGCAGATCCTAGGGGCTTGCATG
TTATTTTATTATGCTATGATGTTCCTGGGTGTGTTTTTTCCTAGATATAA
TAGCTTCAGTGTTCCAGTCCTTCTTACTAGCCAAGTAGTCTGTACAATCA
GCAATATATACTATGTAAATAGACAGTCAATTTAGCTTCTGAACGATCCT
TTATTGGTATACTTATACAGTTATCTTTCGCATTCGGATGTGCTTCTTTG
TTACAGTACAGGTCTTCAAAAGCATTTATTAAAGGGATTCTGAGCAGCGG
CAGATCTGAGACGTGACAGGACAATTGCCCCAGGACAATTACCCCCATGC
CACAGgtgccgtggtatagtggtagtcgaccttggcttctgtgctgGGGC
CAGGGtttgattcccactcacggcagttcacttggcaagtgaacgttcct
tcgcccgggtcaacccatgccatgtgaggggaattgggttgTCAGTTNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNtcagttcaaggtgctgacgggac
gctcattagtaagcgtctatagttgcgagaataggcctctaaagcctcct
gcaactcaaccaaatagaaatagaaatgccCCTAgacaatttcattattt
ttcatcccCCTTTCAAGTGTCTCATTTCCATATAATAATCATttcagggg
ggggtcaacatttataataccaactcatagcccaaaaacctgacttttga
ccttttgagctaagttaacaccaccaccccaaaattggtattgataccaa
cttgaaaatcataattttcagaaaaagggggaccctcccctttattttgg
tatcgataccaacttgaaaatcataattttcagaaaaaagggggacccac
ccccttaatatggtattgataccaacatgactttttgaattagACAAAAT
ATcttgggacccaccccctaatttagtaccaatatcaatctgacaaattt
gagtttaaagctgtttaacCCTTTGCGTGGCGTTACCTTgtttttgtacc
ccaatccatttgccgaggggtaattttttttagtaacctgatttgccgat
gtcgtatatatacgacatgcaaATTTTAACTCNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTAACTCGTGTTGCcgcatgtcggatatatacgacaaggatatttta
ttcctatttgccaatgtttgacatttgtatttgacatttgttttatatat
attttatgatATACTAAAATAAACCTGAAATAAATCTTTTGAGCACTTAA
TATATACTGTCACTATTactatttggatttttttatgtcGGATATATATG
ACATCGGCaaataagaaaaccattttcctaaaagctgATTTCTCGGCAAT
AGAGCTCCCTCTTTTTTAAAGGCCTCAGTaattaggtaaaaaaatttgat
gtcggatatatccgacattggcaagtagagtggaaatttgcatgtcggat
atatacgacatcggcacggaaagggttaaaggGAACCCacccctcccaca
caaacagggtactaagagaaacttcaaataaactcatttttgaaatactc
tttcttcaacacaacacaaaaaatgtcatacgctaaaatagaaaatgact
gaaaactgacaatataataaaaacaaacccaatgaagctagcaaaaggat
tattagtacataattttagaacagaatagattcactcattaccaaatgct
atcacagaaaaaatgtttttgtttcaggcttgatcaaaaataaaacttgg
aaatatcgaaaaagtccaaaataaacaaacttcaaagtcatttatatact
tattactcatttacagtcattatactcaaaagctaaaacaaatccaattg
aaacctgtttagactgatgTGTACCCTGGGGcattttctagctataaggg
caaaaattagaaagttttgctgtcattttgatatggataccaattttctg
aatcatattatttaaaaaaaggggtacccaccccctattttggtatcaat
accaactgaggataactctttttttctaaaaaaaaggggacccaccccca
tcaataccaacttgacttttcagacttttaaaggaaaaaaagacaccacc
acccggctatgggtctggtatctggatgttgacccccctGATCATTTGAA
TCCAAAAAGATGATAATAAATCTTTCTTCTTTACTTTGATGAGTAGCGGT
TGACGAGATATTTTCCACCAACTTCAATACAATGTTCTACATCAATCCCA
AGATGAGAGCAGATGAAAGAAGTATCAACAACAGCTCTCTTCTTTTTACT
GAAAACGCATTTTCCGCTTTTTGATGGTGGATCTTTAATCATAGGGCCTC
ATAGAGATAGAACATTATGTGGATCGATTTTATGATGCAGCTAGATGATG
CATACAATCGTATTGACAATACTATACAAAAGCGGAGACAAGCAACAATG
TTGTTTTCAAATGTATAATCACTAGTTTAAAACAATGACTCGGTTTCGTT
GGAATGCTGGTTCAAGTTCTCTAATTTGTAAGTCACAAGGCTGCCTTCCC
AATCGATTCCCTCATTAAAGGCTCTTTGACTTGATAAATATCTGTATAAG
AAAATATATCCATGTTATTGTCAACTGACAATGGTTGTTATGAAAGATGC
AGTTGAACAAAATGGCAACCATTGATTCCGGATTTCAGATACATAGATTG
GATTATAATAATCAAAATTGGAGTGAGCAACAACAAAACATTTTGCGAGG
AGTTTAATTAGTCATTTTCATGACGGGAAAAGGTGGGGTAGGCCAGTATT
TAGACAATGAAATGAGGTAAATTATCGAAATGATCCAACGGAGGTATATT
CGCTTGATAGCCAATGATAAAGTTATGAAGTCAGCACAGATACTCTCAGA
AAGCCTTTGATCCTGGGAACCCTTGAATGTAGGAGATCAAATTAAAATCC
ATCCAAAGAAAGTTGTTGTAATGTAAATTTCAACCAATTCAAGGGAGAAT
CAAATTCTGCATCGTTTTTTCCCTCTACGTTACAATATTGgcatatatat
attttttgacaCACTAGAgactttttaacaaaaaaaaacaaatagcaaaa
aatataatacaTGTCGATTGTTGAATGAGGTGGGGTTGGGCTGGTAAGAG
ATTTCtggtgggggtaaccctatgtaggtggggtTGATCTTTTTCAAGTG
GGGTTGGATGCTGCCCACTATGACTGTCAATAAACTGCCATCAAATTGCA
AACCTTACTgatgaaattgattttaaaaaagcAATAGATAATAATNTAAA
CTGCCATCAAATTGCAAACCTTACTgatgaaattgaatttaaaaaagcaA
TAGATAATAAATCAAACATTCCCAGCAGGGATGGGGGGTACAAATCATTT
AAAGAACTTGAAgattaaaaagaattataaTAGTTTCTGTTTTAAACGTA
ATGTAACTATAAAAATAACTGTATATAATAGGAACTGTCTTACATGGGAT
TtactttgacgtcaaaattacTGCGATTTTAAGGAATTTGCTTCGATTCG
CGAAACTAACTGGTcacgaaaaaaattaatattgcTGACTCGCGAAAGTC
TTTAGATCACTAAAGTTTGGTGTCTACCGGAAAAATAAGATCGTCGCGAA
TTTGTCTGGATTTATCTTTTGTTAACAGGTATTTGCGAcgaacttatttt
ttttttcagttgacaCCCCTCTTAAAGTACTAAATTACTATTTGATTGCA
TGTATAGAACATGTGTTGAtactattttgaaaaacaaaacaaaaaacagc
aaaaacaaaTACTTTCACTTTccactttataagaaaaaccaggcaaaaac
tttttcttcatGATTCGAAAATGACACACACCGCGAAATATTTCATTAAG
TCAAATGCGCGAAATAAAATTCTCGCGAAATAACAAAGATTTTCTGGccg
cgaaaatttttgacattaaagTAGATTCAAAAATAACTGTTTTACAAGGA
ATGTAGCTATAAAAATAACTGTGGGGGGGACGTCAAAAAATAACTGTGTG
GGGGGACGTCATCATCCATTATCTCTTTTCTTAGAAGAAAAAGATATCTC
AGAAATTCAACTCCGTATGTTTTAGGTGCAGATCCTTTGGAGAGCGATGT
TACGATGAACAGCCAATCACCGAGCTCAGGAAAGAAGAACTTTGAAGACC
GATGTAATTTTTCTACAACTCGCCACAGATCACTGTCCTCTTCGATTGCA
TTCACCGACGCCAATAAAGTGTTCAAAGTTTCAAATTGAGGTAGGTATCT
TTTTGGAATTAGATTAATTAAACTTGTATCTTTGGTTAATATCACTATTA
ATTTACTCAATGATGTTCTTTCGAGAGTTGAGATATCACACTCAAAGAGT
TTTTCTGTCACTAAACGCACCACCGGGATTTCTGATCTCATCAGTGTTTT
TTTCGCTACTTCTAAATCTTCTTTACTGGCCTTGACTTTGCCACAAAAAT
GTCTTGAAATTaatgttttcaagaaaaaaattgaaggatgAAATACACTT
TacaaattgctaaaattagttTGTGTCTTATTAGTATCTACCtggcaaaa
atgactttttaactttaactcttaaaattgagaaataaaaaaataatgaa
aaaaacaattgcgaacgaaacaagtgtgaacaaAATATGAACAGTTAGAA
TACCTTCCCGAAACATGGCATCTGCGTGTCGTGTAGTTGTTGATGGCGTA
TATGTTGAGGGGTCTAGATAAATGAATGGGAAATTTCCAgatcaaaaaca
gaaaaaatcaataGTTAATTATGATTCCTTATTTATATCAACTGAGATCA
GCTCTgtcactaaaatttgaaaaataccttcCGAAGATGACACAATTGGT
TCTTCATCAGCAATGTCCATGTCAATATTATTAGATAGtgaagaatctaa
aaaaaatataacttgACATCGCAGGAGGATCGTCTTTCATTTTATCTATC
AACAGCTGGTCAATTATACTCAACTGAATTCTGATAATTAGATATAAGCA
TGCTAAATTCACACAAAAAGTtgtgaaaagtttttatatGAACTGATAAA
TTCAAGGCAACTGATTACGATTTacaaaatgttctgatattaatgcaaaa
tttttttaagatagGATAGGGATGAGGATTGAATCTTAAGAATCAAATTT
CATTCCAGGATTGAATCCTGTTGTATTAAGTATTACCTGATGTCAATGAT
TTGATTGGTTCCAACATTGCAGAGCTGTATTGATTTTGAACAAActatta
attaaaaatttaacaaactaTTAATAATTCcattaaatttaaaaacatct
GTTTAAGCAGAGATGTGTCTCATCATGACCTATCTGATGTTAGGAACATT
CGAAGCTTGTTTGAGAATTTCCCTGCTTAAATTAAAATTACACAAATGTC
TTTNACATCTTTTTAAGCAGAGATGTGTCTCATCATGACCTGATGTTAGG
AACATTCGAAGCTTGTTTGTGAATTTCTTTGCTTAAATTAAAGTTACACA
AATGTCTTTCGAAAAAAACTGTGACTTTAAATTTTAATGTTTAAAAAGAT
CTAAAAAGATCaagatttttacaaacatacctgaggaaacttttttgatt
tagaTTAGATTTTGTGTTTTCTATAATATATTTCAGTATATTTTCCAATC
TGTAAGAGgaaaaaagcaaataaattatttcttaattttttaacagCTTT
AAATTCAACCTTGCAACGTTTCCTTATCAATTAGCAATATCTTCAAATTC
CTACATTGagaatcacaaaagaaaaaactttgtGAGTTTTacaatataat
atttcaaaaatagttaCACAGCAGAGCTAgttatttttaaatatataaaa
actttatttttcctttttctgacagGACACATATTTCAGATCTAAATAAA
TTTATAGCTTCCAGATAGCTCAAACGAGCCTTTTCtaagaaaaatcaatt
taaaacttAATCATCAATACAATAGCAGGAAGCATTTCTGGTGCACTTCC
AGATCTTACGGTGCTGCGTACAACAAAATTGTGACTGACCGCCTATAAGT
TTAAGAACCATAGTGAAAACTGATTACATATGTGAAAAGAGAAANCTGCG
TACAACAAAATTGTGACTGACCGCCTATAAGTTTAAGAACCATAGTGAAA
ACTGATTACGTATGTGAAAAGAGAAAGAATTGAAAGAGTTAAAAGCTACA
AGATCTTAGGCTATTAGGTGACAGAAGATGGCAGGCTAACAGAGCAATTA
AAGTAGAGTAACTTTGTCTAATGCTGGtataccttgtctaattccatcat
agcaactatctgatttttgaattgtttaTAATTAAACCTTCTGAGTTTAC
ATTACATGTATAAAAAATCACTCTAActactttgcagaccagatagttgc
tatgacgGAATAAAACAAGATATGTTGGCATTACACAAAGCTACGGTAAG
CAATCATTACTGTTATAataattttgtgaaaagtaaGGTCTTGTTAAATT
TAGATAAtactttttgaataaataacCATAAAATTTGAGGGCTGAAATAC
TGATTGTTACCCCTTGCTTATGAAAGTAGCGCTTATACTGCTCTGACTAG
CTAAGAGCCAGTAAGCCTGTTCCATGTCTTGAATATCTCCCTCCGCAATT
GTCCAACTAAACACATCTCAGTGCCATAGCTACAAGCCTAATAGTCCTGG
CTTCCTCACAATTGTGAAAGACACATCTGGACTTATCTCGCTTGTACTTT
CAGTCgtctaccgtaacttggtctaagacacccttttttaaagttaaaaa
tagTACCAGAAAGGTCGAAACTATTTATCTTTGCATTCTGGTAAGagagg
aaaaattatttttcaatcagTAATTCCATCTtccatattattcctatctc
taaagaagggtgttggagttagatgagggatgtcagTATTATTAGACCTT
CTTAAACCATGTAGTTcaaagtttttctgacttttgggactttgtgagtt
attttctatgtttttcaactGTTTGAATGATTTTCTGAAAGATCGCCACA
AGTGTGCAGTGAGATTCAAACCCACTATATGAAACCCCACGCTCTCTAAC
CACTGTTCCACGGATTCACGCCAGGGAGagttaccgtaagttggtctaat
atcgaaaCCCCTTGTCTGAAAACTATTTTATAtttgtacaaactacagac
cagactatattaagagaaaatcacaaaggAATATGCTTGTTTCAAGCTCC
AACCCTGACGCTAACTGTTATTAACCCAAATTCTACTAGCTAATCTCTGA
TACACAACCAACCACACCCAATCAAACCGCATCACACCAGACCAGTTTGG
AAATAAAATGATCCAACAATAACTTTCAAATGGGCTATCTTTCCGAAAGT
TGGCTCAACATTCAACGCCTTTTTCTGAGCAATGTTCAATATGTGGCTCA
ATTACTTTTACAACCTCATTGGCCCAGTCATAACAGATTATTCAGATTAT
GATATATTAAAAAGTTGACATTGGATAATATAAAGTAAAGAGAACAATAA
GAAAGAGTTGTTTGAAATAGATGATTTCTCGTCTGGAGCGAGCCTGTTAC
TATGTCGATAACCCCTCTGCCTAAGCTCTAATCTActtcttttttgtctt
tttataaaTCCATCAGTCCATGCCCAAGCCACACCAGCTATAAGGGCACA
CAACTGACAACCAACCCAATTCAACGACGCCTTCTAACCTTCTAGATACG
CCTTACACCCGCCTCTTTACCTTTATAGAAATACTCGATAGTGGTGTAAG
TACGATAGGCCAATCACATCACTGCATTTGACTACCATTACGCAATGCTT
TCTATTTTTAGATAGATACGAGATTTTACCATGACCGCCCTCGATATGTG
TCAAAagcaattcaatatggctgccaaaGCGGTGCTTTTTCGTTCGTTCT
GTGTTTATCTCTTGCCAGCTTTTATTTATACAATCATTATATTTTGTTGA
AAtggcttttaaacttataactaaggaagatacaacactggagttagatt
ataaagatgttcttttctttaaagtatgaagattttaacttatttgctca
agttttttcctgtattgtgagttatttttttacctGATAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061388-exon-scaffold_358-1491911889:226346..226782 | TCONS_00061388-exon-scaffold_358-1491911889:226346..226782 | Clytia hemisphaerica | exon |
| TCONS_00061388-exon-scaffold_358-1510915933:226346..226782 | TCONS_00061388-exon-scaffold_358-1510915933:226346..226782 | Clytia hemisphaerica | exon |
| TCONS_00061388-exon-scaffold_358-1575043694:226346..226782 | TCONS_00061388-exon-scaffold_358-1575043694:226346..226782 | Clytia hemisphaerica | exon |
| TCONS_00061388-exon-scaffold_358-1491911889:232371..232535 | TCONS_00061388-exon-scaffold_358-1491911889:232371..232535 | Clytia hemisphaerica | exon |
| TCONS_00061388-exon-scaffold_358-1510915933:232371..232535 | TCONS_00061388-exon-scaffold_358-1510915933:232371..232535 | Clytia hemisphaerica | exon |
| TCONS_00061388-exon-scaffold_358-1575043694:232371..232535 | TCONS_00061388-exon-scaffold_358-1575043694:232371..232535 | Clytia hemisphaerica | exon |
| TCONS_00061388-exon-scaffold_358-1491911889:236157..236437 | TCONS_00061388-exon-scaffold_358-1491911889:236157..236437 | Clytia hemisphaerica | exon |
| TCONS_00061388-exon-scaffold_358-1510915933:236157..236437 | TCONS_00061388-exon-scaffold_358-1510915933:236157..236437 | Clytia hemisphaerica | exon |
| TCONS_00061388-exon-scaffold_358-1575043694:236157..236437 | TCONS_00061388-exon-scaffold_358-1575043694:236157..236437 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_358 | supercontig | scaffold_358:226346..236437 + |
Blast
The following BLAST results are available for this feature:
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