TCONS_00061411 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061411
Unique NameTCONS_00061411
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1375

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061411 ID=TCONS_00061411|Name=TCONS_00061411|organism=Clytia hemisphaerica|type=transcript|length=1375bp
ATTTTCCTGAAAGTTCTTTATAAATATTATCTAGCTCTGCGTTCTAACTT
GTATAAAGTCAACTATTAGGTCATAATTGCGTGGGATTTccttctttttt
gatttttgacgtGTGGCAGTCTTGCAGTCTTGTTGGCAAGGGCATCATCA
ACCCATCAAGCCACTTGTCTACAAAGGTTTATCTTGTAACTGTTTATATC
AAACATCACAATTTTCAAATTGTTCTATTATGCTTGCATTATCTACAATA
CTCTTTAACAAGATCACAAGGCCAGTGGTTTCGGCAATTTCATCATCACA
AAATCTTTCAGCTTCAACAAGTGACAAAATGAACCTTGATGAAGATCTTT
CAATCGTTATGTTTGTTCTTGGTGGACCAGGTGCTGGAAAAGGGACACAG
TGTACTAATTTAGTCAAGGAATATGGTTTCGAACATCTATCGGCAGGTGA
TTTACTACGAGCTGAACGTAACAGTGGTTCGAAAGACGGTGAACTTATAC
AACATTATATCAAAGAAGGAAAGATCGTCCCTGTAGAAATCACCATCCGT
CTACTAGAGAGGGCCATGAACGACagtccaaaatcaaaatttctgatcga
tggTTTTCCACGTAATAAAGACAATTTAGATGGCTGGAACAAATTAATGA
CCGGAAAAGTTAACGTTATGGGCGTTCTTTTTTTCAACTGCCCCGAAGAT
GTGTGCGTCAAACGAATCATGAAACGAAGCGAAACGAGTGGACGCGCTGA
CGATAACGAAGAAAGTTTACGCAAACGATTTCGAACATATTACAACGAAA
CGATGCCGATTATCGATTCATTCAAAGCCAACGGGCTCGTCATGAACGTC
GATGCCACACCCACACCTGATCAGGTCTTCGAAAGCGTCAAGAAACTTCT
CGACAATAGGTAATGTCGTTAAACAGTTATCTACCTACTGAACATTAAGT
GAAAACACCTATTTGTTCGTTCTGTTAAAATGTATTTGTTTTGTATATAA
TTTGTATAAGTTTCACAGTTGGATGTTTTTTTATGTTATGCTGGGCACTC
ATCGAGGGTGTTGAATTATCGTTACTTTGGCAACTTTTACGTACAAAGAT
GGTGCGGTTTTGTACATACCTTTAAAATTAGGAGGAAGACCAAATGAGAT
ATTTGTTTTACGTTGAAATCAACATTGGTCTCTCATGGTAATTTAATTAG
AGACATTTTTGGAATTATTTAAACAAATGAGATGGGAGTTACAGTTACGC
AGGGTTATCGGTTAATGGCAATATGGTTGGCTATTTCTAGTCGCATCAAA
GGCATAATTAGGGAATGTACTGTATCTAAAAGATAAATATAATAGGGAGT
ATTTCTTTTACTTGGTGAATTAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_358:660592..667536+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061411 ID=TCONS_00061411|Name=TCONS_00061411|organism=Clytia hemisphaerica|type=transcript|length=6945bp|location=Sequence derived from alignment at scaffold_358:660592..667536+ (Clytia hemisphaerica)
ATTTTCCTGAAAGTTCTTTATAAATATTATCTAGCTCTGCGTTCTAACTT
GTATAAAGTCAACTATTAGGTCATAATTGCGTGGGATTTccttctttttt
gatttttgacgtGTGGCAGTCTTGCAGTCTTGTTGGCAAGGGCATCATCA
ACCCATCAAGCCACTTGTCTACAAAGGTTTATCTTGTAACTGTTTATATC
AAACATCACAATTTTCAAATTGTTCTATTATGCTTGCATTATCTACAATA
CTCTTTAACAAGATCACAAGGCCAGTGGTTTCGGCAATTTCATCATCACA
AAATCTTTCAGCTTCAACAAGTGACAAAATGAACCTTGATGAAGATCTTT
CAATCGTTATGTTTGTTCTTGGTGGACCAGGTGCTGGAAAAGGGACACAG
TGTACTAATTTAGTCAAGGTATAACTTGAtccttttttcatattttggca
GTCACTTGTATCATGCAATAATAAAGTCAAGCTGGCTATCCTGAAAAAAT
AGATTAAAAAAATCCCGGACAGTCAGGAGAAAATTAGATAGTGCAGGAAA
AGGACCATTCCAAAAAAATTCTCCATGTTTTGCACAAactaacttgcatc
agtggaggctaacatgcatggccctaaccctaacccatAGCCCTATATTC
tgcaaagttaaatcaaaacaaaaatagtagagtagagctgttagtgcagc
tgcgtagttgtattttaatgaccagacaggtcattcatttgagggctatg
catgttagtctccactgatgcaagtttacctgatctcacggtatatattA
AAGTTCATAGGttacaaaatttcaagattCGCAAAAATTTTTCGAGGAAA
CGTGTTaagcgtgtattaaattttacAATTGTCAGTTTGTAAAAAGTTTG
CGTGCATTATACAAATTTTGCAATTCACTAAattgggcattttcaaaaag
tgggaataaagcaagaaaatgactgattttgCACAGGCGATATCATCTGC
CagaccaggatgcaagtgaaatttttcaatctgtgGACCTAGACGGGGAT
GGTTATTATCACTTATtatgttagggttagggttggagctccaGGACGAC
TGTCTGTCGTGTCGGTTGAGCCTATCCgcaaaattaaagaattttacGGG
GACTTCATTTCGCgtatggcactattgggtgccaatattttcacaatttt
tttacttctactgtcaaatcatgcatgttggttgttgaaacacacattat
ttgcgcttctttgatgcaagtgACCATTCAAAATGTAtttattttacata
tttttagtattgtttagaaatatttcgcggatgaggctcttctaaatttc
caatgggacttaatttcgcagatGACATCCAAATctgcgaaatccgcgaa
atttaatcgcCGCAAAAGTtcatcccattaaagtaacttgcatcagtgga
gggaaacttgcatagccatcaaatgactgaccaaccaaagcagcaaaatg
tcaaaaaaaatgaacaaatgaaTCCAAGTGAGGTCAATTATTTGAGGGGA
ATgaaagtttccctccactgatgcaagttacgcGACTTCACGGTACCACT
TGGATTCCTAGACTATAGGTTTACAGTAGCTACGAATACTCATTTGTCTT
CAAAATCGGTAAAAAGGAGTTTTTAGCTGTAcaaaaaattccatttatac
TCAAGATCTGTCATAACAGAGTTATTAAtccgtaaaattttgaaattggc
tATCAGCTTGTCATGAAATAACTACCATGTGATAATTATATgtaaatctt
tttaattttatgcagTCTTGTTCTATGTTAGATAGCTCATATTTTATGac
catttattgattttttgagaTCTGTGGGCTGAGTAGTTACTGCTGAACAA
ATAGCTGCTGTGGCTGACATGGGTgtagtttcaattttttttaagtattt
tttttttaatgaatttgaagagaattgaaaaagttttttgagaaaattat
ttgaGCTGTTAAAATAGTATGGGAAATTAATACTGTAGCGGGGGATGGCA
GATAGGGTAGGTGAATGGGGACTTTCTTTTTGTATGTCCTGTAAGGATGT
ATGAGAAATGTCTTAAAATTAGTTGAAGTAGTAAAAATAGTTGAAATTTA
TTGACAGTTTTCCTTCCTATATACCTTCTTTTTAGTTACTTGTTTCAAAT
TGACCCCCTCCCTCCTAAAGGGAAGGTGTTCatacttttaaaaattcaat
agCTCTTAGACAGTGATgtaaaactttaatttttatgtttttgtttgatt
tctcaACAGAAATATTTTGTGGTCATTCACACTCCCATATCACTTATCAC
CTTGTCATTGTGCTTGTACATTTGTCTatgttaagcaaaaaaaaaaagga
tagAGGAGGAAAGAGAATACTTTACTTTGTCGTTGTAAAGTTAATAACAA
CACAACCTAAGATTAAAGTTTTATTTCTGGGTGAAATATTCAATCCAAGT
TATGCGCCAAAAATTTATAGGTACGACCAATTACCTATTTGGACTCTTTC
CTaaagatttcatcaaaatttctaaatcttgaagataattttagtaaaaa
tacaCTTCAATGCTTAGCTCTAATCATTGGTTTTTATATACAAGGCTGAT
TaataatttataaatcttttaTTACACAGTGTTCCAATTGAAACATGCTG
GCAttacaatttatttttattgaatcaACACTACTCCCATACACTGCAAA
CATCACAGTTTAGTTTTATTATGTAATGAAACCAACATGTAAGGTCGTgt
aataaaaacattcaaaaggcATCAAGTTTCTTTATTAAGCTTTATTCTGT
GATCAGAGTTACCTTCATCGTTAAgctcattttgaaacattaattttttt
atgaatgtttGACGTTCTatttcctgctaaaaatatttttattattatta
ttatctatttttaaattacaaaaaagaacAACGAGGTTAAAGTCATGGGA
GAAGTAAATCGAGAATAACCCCGAAATTAATGCAgcgtaaaagtacaaaa
aatcgATTTTCGATAGagatttactggttcttatcaTAAAATGGTTTGTA
CTGATGAGTGGATTGACTCTCAAGACCTGTGAATTttagacatttaaaaa
aagtaaatgttTCACATTTGAGTGTGATTAACTGAAAAACTCTAGAATAC
TTTATCGAATTTTATATAACTATAGTTGCATTTATTTGAACAACTGTGAA
AACCTTCTAATCttctttcaatatttatttgGTGATTGCAAAAGTATTGA
CATGAAATTCAATTAATGATTTTCGATGTTTATTCATGATCAAGACAGAA
gcaacttttcatttttttctctaaagATACTCGATTTCTTTATACATATT
TATaactctttctctaattcgaacctctattaagCGAGACTAGATTAATT
TGTTGTTGTATTTCCACTATAATATATTTTaaacactagttatttgtacg
aattaaatttgaatggatctgaaaattaattcaagaaattgaaaaattta
gaaaatcaagcattccatacactgaAATTTTATTATTCTCTGGATGATGA
ATGAATTAAGTCATCAAAGTTATTTATACtattcttttgataaaacaaag
ggGGACGTTGCCTAGTTAAAGACTAGGTGAATGGGTGGAGGCTACTATCT
TAGATCCCTGAGGACATCATGACGGTCGGAGTCTAAACCAGGGAAGATAT
GATctctaactttttatttttggacctataaattaaccgttatTCACTTT
CAGTGAAAGTCTCTTTCCACAGACAAACCTATAAAACTCGATTTTGTTCA
TATACTTTCAtaggaaatatttttatctttcagGAATATGGTTTCGAACA
TCTATCGGCAGGTGATTTACTACGAGCTGAACGTAACAGTGGTTCGAAAG
ACGGTGAACTTATACAACATTATATCAAAGAAGGAAAGATCGTCCCTGTA
GAAATCACCATCCGTCTACTAGAGAGGGTAAGAAAACAGTTATTACGACT
CGGTTATCCCAACTTCCCGATtcgctaaaaatgaaaatggctTTTTGGAC
AATCTTCAAATTTAATTCGCTGATTTTGTTTTAAGTTACTTCCCATTTTG
TGactctaatacaataatgaccggttagtgagggctgtactgagaaatat
tgcccgaggtaaagtaacgaccgagcttgcgaggttgttgcgttgaccga
gggcaatattttcagtacagcccgaaaaaaacggtcattattgtatttgt
taaccgtttccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttc
cttcagcttcgattgatttttagcgctttatccaggaaaaatagcgaaat
aaagcagaaaaaacaagcgaaaagagataaaaattgctataatttctgat
gtcagaaataaaaaatgagagaaacgATGTCAacacattgttcattttcc
tttgaaaaagtgacgtcacaatgaattttcctaacgacgggcaactctgg
acaatgtaggcccgtcgtcatgcgaaaagaaccaattgcattgcgcaaaa
aagtcgtgtagcccgcttcgaaaaagtaaccggttaacaattaAATATAT
TACATTTTTATTTAGCATAGGTTTTTCCATGATTTACTTTGCAGCGTTAT
AATATCCTTTCGATTTTCTTAATAATAGGCCATGAACGACagtccaaaat
caaaatttctgatcgatggTTTTCCACGTAATAAAGACAATTTAGATGGC
TGGAACAAATTAATGACCGGAAAAGTTAACGTTATGGGCGTTCTTTTTTT
CAACTGCCCCGAAGATGTGAGTCCTTATTTTTGATGGGCCATCTAGGTAC
CTAATTTTGTAAGGTTCCAAATACCTTGCTTTAGGTATTGATTTGCGGAT
ACTTGGGTTTACATATAAGGCTTGTGCAAAATTAGAGTTCCtttaccatt
tttctttttttttttgttgaaattttcgGGTGATTGATCTAAACTCATTT
GCATAATTCTTGCACATAGTCCTTAAAAAGTCTGTACACATTGATCCGAG
AATCTTCATTCTTATCTATTAATGATATTCAGGacataatgttttctacg
gaaagaccccggtttttgccagtagtggcaaattttatacaagtttttgt
ctagtttaaatttgccactactggctaaaaccggggtatttccgtagaaa
acattacgttatgaatatcatgaattttgtCTTCTTTTCAATAAGGTGTG
CGTCAAACGAATCATGAAACGAAGCGAAACGAGTGGACGCGCTGACGATA
ACGAAGAAAGTTTACGCAAACGGTGAGTTGAATACCTTAatggaattaat
ttttgcggggattaaatttcgcggttgagctcatccgcgaaattttaaga
ttttgtggcgacttaattttgcggatggtactattgggtggcaatatttt
caacattttattaCCTTTTACTGTtgaatcatgcatgttggttaaTAAAG
TACGtgttattagcgcttctttgatgccagtaaatattcgaaaattattt
tatttgacattttttgagtgttatttgaaaatattttgtggaTAAGGCCT
TTCCGAATTTACATTGGGACTTAACTTTGCggacccaaatccgcgaaaac
cgcgaaattcaATTCCTGCTAAATTATTATCCCTTTTAGCCATCaaaata
tatagtttgttttttacTTGTCTCGATTTTTTCCACTGAAGATTGGTGCC
TGAGcgccatgaaactctgagtttgaaacaaagatattgtgtcaactctt
tattatgTGTGTTTTTATAAATAACGTGTACCATTTTCACTTCAGATTTC
GAACATATTACAACGAAACGATGCCGATTATCGATTCATTCAAAGCCAAC
GGGCTCGTCATGAACGTCGATGCCACACCCACACCTGATCAGGTCAGATA
GATCAACTTTAATCATTGTATCGGTTGGATTTGTGATGATTTTATCTTCA
TGAATACTGTAGAGTCTCTTTTACTCAAACTGGCACTAACAAGTTTTCTT
GCCTTtagttaaaaatgccttaatTCATATCTTCataatttgtgttcccc
gtgcgtgttcgagtcaTTGGAGGATCATCTGTATTATATTTATagaatta
atttatttttgtgacCCTTTTAAAGATTATTATCTCCTAGTGAGATTTTG
TATGGGATAGCCATTCTATACGGAACTTTGTTATTATAAtgatacttttt
tcaaaaatactgttttaattttacttttatcttttttttaccaGGTCTTC
GAAAGCGTCAAGAAACTTCTCGACAATAGGTAATGTCGTTAAACAGTTAT
CTACCTACTGAACATTAAGTGAAAACACCTATTTGTTCGTTCTGTTAAAA
TGTATTTGTTTTGTATATAATTTGTATAAGTTTCACAGTTGGATGTTTTT
TTATGTTATGCTGGGCACTCATCGAGGGTGTTGAATTATCGTTACTTTGG
CAACTTTTACGTACAAAGATGGTGCGGTTTTGTACATACCTTTAAAATTA
GGAGGAAGACCAAATGAGATATTTGTTTTACGTTGAAATCAACATTGGTC
TCTCATGGTAATTTAATTAGAGACATTTTTGGAATTATTTAAACAAATGA
GATGGGAGTTACAGTTACGCAGGGTTATCGGTTAATGGCAATATGGTTGG
CTATTTCTAGTCGCATCAAAGGCATAATTAGGGAATGTACTGTATCTAAA
AGATAAATATAATAGGGAGTATTTCTTTTACTTGGTGAATTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038528XLOC_038528Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061411-exon-scaffold_358-1491911889:660592..661009TCONS_00061411-exon-scaffold_358-1491911889:660592..661009Clytia hemisphaericaexon
TCONS_00061411-exon-scaffold_358-1510915933:660592..661009TCONS_00061411-exon-scaffold_358-1510915933:660592..661009Clytia hemisphaericaexon
TCONS_00061411-exon-scaffold_358-1575043694:660592..661009TCONS_00061411-exon-scaffold_358-1575043694:660592..661009Clytia hemisphaericaexon
TCONS_00061411-exon-scaffold_358-1491911889:664475..664618TCONS_00061411-exon-scaffold_358-1491911889:664475..664618Clytia hemisphaericaexon
TCONS_00061411-exon-scaffold_358-1510915933:664475..664618TCONS_00061411-exon-scaffold_358-1510915933:664475..664618Clytia hemisphaericaexon
TCONS_00061411-exon-scaffold_358-1575043694:664475..664618TCONS_00061411-exon-scaffold_358-1575043694:664475..664618Clytia hemisphaericaexon
TCONS_00061411-exon-scaffold_358-1491911889:665420..665557TCONS_00061411-exon-scaffold_358-1491911889:665420..665557Clytia hemisphaericaexon
TCONS_00061411-exon-scaffold_358-1510915933:665420..665557TCONS_00061411-exon-scaffold_358-1510915933:665420..665557Clytia hemisphaericaexon
TCONS_00061411-exon-scaffold_358-1575043694:665420..665557TCONS_00061411-exon-scaffold_358-1575043694:665420..665557Clytia hemisphaericaexon
TCONS_00061411-exon-scaffold_358-1491911889:665987..666063TCONS_00061411-exon-scaffold_358-1491911889:665987..666063Clytia hemisphaericaexon
TCONS_00061411-exon-scaffold_358-1510915933:665987..666063TCONS_00061411-exon-scaffold_358-1510915933:665987..666063Clytia hemisphaericaexon
TCONS_00061411-exon-scaffold_358-1575043694:665987..666063TCONS_00061411-exon-scaffold_358-1575043694:665987..666063Clytia hemisphaericaexon
TCONS_00061411-exon-scaffold_358-1491911889:666587..666683TCONS_00061411-exon-scaffold_358-1491911889:666587..666683Clytia hemisphaericaexon
TCONS_00061411-exon-scaffold_358-1510915933:666587..666683TCONS_00061411-exon-scaffold_358-1510915933:666587..666683Clytia hemisphaericaexon
TCONS_00061411-exon-scaffold_358-1575043694:666587..666683TCONS_00061411-exon-scaffold_358-1575043694:666587..666683Clytia hemisphaericaexon
TCONS_00061411-exon-scaffold_358-1491911889:667036..667536TCONS_00061411-exon-scaffold_358-1491911889:667036..667536Clytia hemisphaericaexon
TCONS_00061411-exon-scaffold_358-1510915933:667036..667536TCONS_00061411-exon-scaffold_358-1510915933:667036..667536Clytia hemisphaericaexon
TCONS_00061411-exon-scaffold_358-1575043694:667036..667536TCONS_00061411-exon-scaffold_358-1575043694:667036..667536Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_358supercontigscaffold_358:660592..667536 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
59.4871	57.1931	25.2723	25.1802	27.1586	19.0758	66.3378	66.0078	35.6748	32.5773	35.321	40.1117	36.0469	32.3119	37.1305	38.0413	44.9371	47.1879	45.5931	51.5293	45.0463	51.6587	85.3245	79.9806	84.0923	83.5089	30.0045	28.8039	50.4833	52.7815
Blast
[Close]
BLAST of TCONS_00061411 vs. Swiss-Prot (Human)
Match: KCY (UMP-CMP kinase OS=Homo sapiens GN=CMPK1 PE=1 SV=3)

HSP 1 Score: 226.483 bits (576), Expect = 7.351e-71
Identity = 109/190 (57.37%), Postives = 145/190 (76.32%), Query Frame = 2 
Query:  353 IVMFVLGGPGAGKGTQCTNLVKEYGFEHLSAGDLLRAER-NSGSKDGELIQHYIKEGKIVPVEITIRLLERAMN-----DSPKSKFLIDGFPRNKDNLDGWNKLMTGKVNVMGVLFFNCPEDVCVKRIMKRSETSGRADDNEESLRKRFRTYYNETMPIIDSFKANGLVMNVDATPTPDQVFESVKKLLD 904
            +V+FVLGGPGAGKGTQC  +V++YG+ HLSAG+LLR ER N  S+ GELI+ YIKEGKIVPVEITI LL+R M+     ++ K+KFLIDGFPRN+DNL GWNK M GK +V  VLFF+C  ++C++R ++R ++SGR+DDN ESL KR +TY   T PIID ++  G V  +DA+ + D+VF+ V ++ D
Sbjct:    4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFD 193
The following BLAST results are available for this feature:
BLAST of TCONS_00061411 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCY7.351e-7157.37UMP-CMP kinase OS=Homo sapiens GN=CMPK1 PE=1 SV=3[more]
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