TCONS_00061412 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00061412
Unique Name	TCONS_00061412
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1262

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_358:660592..668754+
coding sequence from alignment at scaffold_358:660592..668754+

transcript sequence

>TCONS_00061412 ID=TCONS_00061412|Name=TCONS_00061412|organism=Clytia hemisphaerica|type=transcript|length=1262bp
ATTTTCCTGAAAGTTCTTTATAAATATTATCTAGCTCTGCGTTCTAACTT
GTATAAAGTCAACTATTAGGTCATAATTGCGTGGGATTTccttctttttt
gatttttgacgtGTGGCAGTCTTGCAGTCTTGTTGGCAAGGGCATCATCA
ACCCATCAAGCCACTTGTCTACAAAGGTTTATCTTGTAACTGTTTATATC
AAACATCACAATTTTCAAATTGTTCTATTATGCTTGCATTATCTACAATA
CTCTTTAACAAGATCACAAGGCCAGTGGTTTCGGCAATTTCATCATCACA
AAATCTTTCAGCTTCAACAAGTGACAAAATGAACCTTGATGAAGATCTTT
CAATCGTTATGTTTGTTCTTGGTGGACCAGGTGCTGGAAAAGGGACACAG
TGTACTAATTTAGTCAAGGAATATGGTTTCGAACATCTATCGGCAGGTGA
TTTACTACGAGCTGAACGTAACAGTGGTTCGAAAGACGGTGAACTTATAC
AACATTATATCAAAGAAGGAAAGATCGTCCCTGTAGAAATCACCATCCGT
CTACTAGAGAGGGCCATGAACGACagtccaaaatcaaaatttctgatcga
tggTTTTCCACGTAATAAAGACAATTTAGATGGCTGGAACAAATTAATGA
CCGGAAAAGTTAACGTTATGGGCGTTCTTTTTTTCAACTGCCCCGAAGAT
GTGTGCGTCAAACGAATCATGAAACGAAGCGAAACGAGTGGACGCGCTGA
CGATAACGAAGAAAGTTTACGCAAACGATTTCGAACATATTACAACGAAA
CGATGCCGATTATCGATTCATTCAAAGCCAACGGGCTCGTCATGAACGTC
GATGCCACACCCACACCTGATCAGGTCTTCGAAAGCGTCAAGAAACTTCT
CGACAATAGttTCCAATCTACTAACCGACGCTTTGGTAACTAACTGAACC
GAACGAACGAATGATAATCGGACGCTCGGAATGATAGATGTCCAATTTGT
TATagtctatttattttttatcatatGTTTTCTGTTCTGTTGACCAGAAT
GTGTGCTTTTTGTAatcaatcattttttaattcgtttttaatgcatttta
gaAAAACTAATAATAACAGAAGAGGAATGAAGGAATGCATCTGTCATCGT
CGTTCGACGAATGTTTCAAGAAAATATTGTCGTTaaaggtttttgaaaat
tttaaaagaaccattcctatttcattgaaaagaagaaagatagactggAA
TTtggatgggtc

Run BLAST on NCBI

protein sequence of TCONS_00061412-protein

>TCONS_00061412-protein ID=TCONS_00061412-protein|Name=TCONS_00061412-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
MLALSTILFNKITRPVVSAISSSQNLSASTSDKMNLDEDLSIVMFVLGGP
GAGKGTQCTNLVKEYGFEHLSAGDLLRAERNSGSKDGELIQHYIKEGKIV
PVEITIRLLERAMNDSPKSKFLIDGFPRNKDNLDGWNKLMTGKVNVMGVL
FFNCPEDVCVKRIMKRSETSGRADDNEESLRKRFRTYYNETMPIIDSFKA
NGLVMNVDATPTPDQVFESVKKLLDNSFQSTNRRFGN

Run BLAST on NCBI

transcript from alignment at scaffold_358:660592..668754+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00061412 ID=TCONS_00061412|Name=TCONS_00061412|organism=Clytia hemisphaerica|type=transcript|length=8163bp|location=Sequence derived from alignment at scaffold_358:660592..668754+ (Clytia hemisphaerica)
ATTTTCCTGAAAGTTCTTTATAAATATTATCTAGCTCTGCGTTCTAACTT
GTATAAAGTCAACTATTAGGTCATAATTGCGTGGGATTTccttctttttt
gatttttgacgtGTGGCAGTCTTGCAGTCTTGTTGGCAAGGGCATCATCA
ACCCATCAAGCCACTTGTCTACAAAGGTTTATCTTGTAACTGTTTATATC
AAACATCACAATTTTCAAATTGTTCTATTATGCTTGCATTATCTACAATA
CTCTTTAACAAGATCACAAGGCCAGTGGTTTCGGCAATTTCATCATCACA
AAATCTTTCAGCTTCAACAAGTGACAAAATGAACCTTGATGAAGATCTTT
CAATCGTTATGTTTGTTCTTGGTGGACCAGGTGCTGGAAAAGGGACACAG
TGTACTAATTTAGTCAAGGTATAACTTGAtccttttttcatattttggca
GTCACTTGTATCATGCAATAATAAAGTCAAGCTGGCTATCCTGAAAAAAT
AGATTAAAAAAATCCCGGACAGTCAGGAGAAAATTAGATAGTGCAGGAAA
AGGACCATTCCAAAAAAATTCTCCATGTTTTGCACAAactaacttgcatc
agtggaggctaacatgcatggccctaaccctaacccatAGCCCTATATTC
tgcaaagttaaatcaaaacaaaaatagtagagtagagctgttagtgcagc
tgcgtagttgtattttaatgaccagacaggtcattcatttgagggctatg
catgttagtctccactgatgcaagtttacctgatctcacggtatatattA
AAGTTCATAGGttacaaaatttcaagattCGCAAAAATTTTTCGAGGAAA
CGTGTTaagcgtgtattaaattttacAATTGTCAGTTTGTAAAAAGTTTG
CGTGCATTATACAAATTTTGCAATTCACTAAattgggcattttcaaaaag
tgggaataaagcaagaaaatgactgattttgCACAGGCGATATCATCTGC
CagaccaggatgcaagtgaaatttttcaatctgtgGACCTAGACGGGGAT
GGTTATTATCACTTATtatgttagggttagggttggagctccaGGACGAC
TGTCTGTCGTGTCGGTTGAGCCTATCCgcaaaattaaagaattttacGGG
GACTTCATTTCGCgtatggcactattgggtgccaatattttcacaatttt
tttacttctactgtcaaatcatgcatgttggttgttgaaacacacattat
ttgcgcttctttgatgcaagtgACCATTCAAAATGTAtttattttacata
tttttagtattgtttagaaatatttcgcggatgaggctcttctaaatttc
caatgggacttaatttcgcagatGACATCCAAATctgcgaaatccgcgaa
atttaatcgcCGCAAAAGTtcatcccattaaagtaacttgcatcagtgga
gggaaacttgcatagccatcaaatgactgaccaaccaaagcagcaaaatg
tcaaaaaaaatgaacaaatgaaTCCAAGTGAGGTCAATTATTTGAGGGGA
ATgaaagtttccctccactgatgcaagttacgcGACTTCACGGTACCACT
TGGATTCCTAGACTATAGGTTTACAGTAGCTACGAATACTCATTTGTCTT
CAAAATCGGTAAAAAGGAGTTTTTAGCTGTAcaaaaaattccatttatac
TCAAGATCTGTCATAACAGAGTTATTAAtccgtaaaattttgaaattggc
tATCAGCTTGTCATGAAATAACTACCATGTGATAATTATATgtaaatctt
tttaattttatgcagTCTTGTTCTATGTTAGATAGCTCATATTTTATGac
catttattgattttttgagaTCTGTGGGCTGAGTAGTTACTGCTGAACAA
ATAGCTGCTGTGGCTGACATGGGTgtagtttcaattttttttaagtattt
tttttttaatgaatttgaagagaattgaaaaagttttttgagaaaattat
ttgaGCTGTTAAAATAGTATGGGAAATTAATACTGTAGCGGGGGATGGCA
GATAGGGTAGGTGAATGGGGACTTTCTTTTTGTATGTCCTGTAAGGATGT
ATGAGAAATGTCTTAAAATTAGTTGAAGTAGTAAAAATAGTTGAAATTTA
TTGACAGTTTTCCTTCCTATATACCTTCTTTTTAGTTACTTGTTTCAAAT
TGACCCCCTCCCTCCTAAAGGGAAGGTGTTCatacttttaaaaattcaat
agCTCTTAGACAGTGATgtaaaactttaatttttatgtttttgtttgatt
tctcaACAGAAATATTTTGTGGTCATTCACACTCCCATATCACTTATCAC
CTTGTCATTGTGCTTGTACATTTGTCTatgttaagcaaaaaaaaaaagga
tagAGGAGGAAAGAGAATACTTTACTTTGTCGTTGTAAAGTTAATAACAA
CACAACCTAAGATTAAAGTTTTATTTCTGGGTGAAATATTCAATCCAAGT
TATGCGCCAAAAATTTATAGGTACGACCAATTACCTATTTGGACTCTTTC
CTaaagatttcatcaaaatttctaaatcttgaagataattttagtaaaaa
tacaCTTCAATGCTTAGCTCTAATCATTGGTTTTTATATACAAGGCTGAT
TaataatttataaatcttttaTTACACAGTGTTCCAATTGAAACATGCTG
GCAttacaatttatttttattgaatcaACACTACTCCCATACACTGCAAA
CATCACAGTTTAGTTTTATTATGTAATGAAACCAACATGTAAGGTCGTgt
aataaaaacattcaaaaggcATCAAGTTTCTTTATTAAGCTTTATTCTGT
GATCAGAGTTACCTTCATCGTTAAgctcattttgaaacattaattttttt
atgaatgtttGACGTTCTatttcctgctaaaaatatttttattattatta
ttatctatttttaaattacaaaaaagaacAACGAGGTTAAAGTCATGGGA
GAAGTAAATCGAGAATAACCCCGAAATTAATGCAgcgtaaaagtacaaaa
aatcgATTTTCGATAGagatttactggttcttatcaTAAAATGGTTTGTA
CTGATGAGTGGATTGACTCTCAAGACCTGTGAATTttagacatttaaaaa
aagtaaatgttTCACATTTGAGTGTGATTAACTGAAAAACTCTAGAATAC
TTTATCGAATTTTATATAACTATAGTTGCATTTATTTGAACAACTGTGAA
AACCTTCTAATCttctttcaatatttatttgGTGATTGCAAAAGTATTGA
CATGAAATTCAATTAATGATTTTCGATGTTTATTCATGATCAAGACAGAA
gcaacttttcatttttttctctaaagATACTCGATTTCTTTATACATATT
TATaactctttctctaattcgaacctctattaagCGAGACTAGATTAATT
TGTTGTTGTATTTCCACTATAATATATTTTaaacactagttatttgtacg
aattaaatttgaatggatctgaaaattaattcaagaaattgaaaaattta
gaaaatcaagcattccatacactgaAATTTTATTATTCTCTGGATGATGA
ATGAATTAAGTCATCAAAGTTATTTATACtattcttttgataaaacaaag
ggGGACGTTGCCTAGTTAAAGACTAGGTGAATGGGTGGAGGCTACTATCT
TAGATCCCTGAGGACATCATGACGGTCGGAGTCTAAACCAGGGAAGATAT
GATctctaactttttatttttggacctataaattaaccgttatTCACTTT
CAGTGAAAGTCTCTTTCCACAGACAAACCTATAAAACTCGATTTTGTTCA
TATACTTTCAtaggaaatatttttatctttcagGAATATGGTTTCGAACA
TCTATCGGCAGGTGATTTACTACGAGCTGAACGTAACAGTGGTTCGAAAG
ACGGTGAACTTATACAACATTATATCAAAGAAGGAAAGATCGTCCCTGTA
GAAATCACCATCCGTCTACTAGAGAGGGTAAGAAAACAGTTATTACGACT
CGGTTATCCCAACTTCCCGATtcgctaaaaatgaaaatggctTTTTGGAC
AATCTTCAAATTTAATTCGCTGATTTTGTTTTAAGTTACTTCCCATTTTG
TGactctaatacaataatgaccggttagtgagggctgtactgagaaatat
tgcccgaggtaaagtaacgaccgagcttgcgaggttgttgcgttgaccga
gggcaatattttcagtacagcccgaaaaaaacggtcattattgtatttgt
taaccgtttccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttc
cttcagcttcgattgatttttagcgctttatccaggaaaaatagcgaaat
aaagcagaaaaaacaagcgaaaagagataaaaattgctataatttctgat
gtcagaaataaaaaatgagagaaacgATGTCAacacattgttcattttcc
tttgaaaaagtgacgtcacaatgaattttcctaacgacgggcaactctgg
acaatgtaggcccgtcgtcatgcgaaaagaaccaattgcattgcgcaaaa
aagtcgtgtagcccgcttcgaaaaagtaaccggttaacaattaAATATAT
TACATTTTTATTTAGCATAGGTTTTTCCATGATTTACTTTGCAGCGTTAT
AATATCCTTTCGATTTTCTTAATAATAGGCCATGAACGACagtccaaaat
caaaatttctgatcgatggTTTTCCACGTAATAAAGACAATTTAGATGGC
TGGAACAAATTAATGACCGGAAAAGTTAACGTTATGGGCGTTCTTTTTTT
CAACTGCCCCGAAGATGTGAGTCCTTATTTTTGATGGGCCATCTAGGTAC
CTAATTTTGTAAGGTTCCAAATACCTTGCTTTAGGTATTGATTTGCGGAT
ACTTGGGTTTACATATAAGGCTTGTGCAAAATTAGAGTTCCtttaccatt
tttctttttttttttgttgaaattttcgGGTGATTGATCTAAACTCATTT
GCATAATTCTTGCACATAGTCCTTAAAAAGTCTGTACACATTGATCCGAG
AATCTTCATTCTTATCTATTAATGATATTCAGGacataatgttttctacg
gaaagaccccggtttttgccagtagtggcaaattttatacaagtttttgt
ctagtttaaatttgccactactggctaaaaccggggtatttccgtagaaa
acattacgttatgaatatcatgaattttgtCTTCTTTTCAATAAGGTGTG
CGTCAAACGAATCATGAAACGAAGCGAAACGAGTGGACGCGCTGACGATA
ACGAAGAAAGTTTACGCAAACGGTGAGTTGAATACCTTAatggaattaat
ttttgcggggattaaatttcgcggttgagctcatccgcgaaattttaaga
ttttgtggcgacttaattttgcggatggtactattgggtggcaatatttt
caacattttattaCCTTTTACTGTtgaatcatgcatgttggttaaTAAAG
TACGtgttattagcgcttctttgatgccagtaaatattcgaaaattattt
tatttgacattttttgagtgttatttgaaaatattttgtggaTAAGGCCT
TTCCGAATTTACATTGGGACTTAACTTTGCggacccaaatccgcgaaaac
cgcgaaattcaATTCCTGCTAAATTATTATCCCTTTTAGCCATCaaaata
tatagtttgttttttacTTGTCTCGATTTTTTCCACTGAAGATTGGTGCC
TGAGcgccatgaaactctgagtttgaaacaaagatattgtgtcaactctt
tattatgTGTGTTTTTATAAATAACGTGTACCATTTTCACTTCAGATTTC
GAACATATTACAACGAAACGATGCCGATTATCGATTCATTCAAAGCCAAC
GGGCTCGTCATGAACGTCGATGCCACACCCACACCTGATCAGGTCAGATA
GATCAACTTTAATCATTGTATCGGTTGGATTTGTGATGATTTTATCTTCA
TGAATACTGTAGAGTCTCTTTTACTCAAACTGGCACTAACAAGTTTTCTT
GCCTTtagttaaaaatgccttaatTCATATCTTCataatttgtgttcccc
gtgcgtgttcgagtcaTTGGAGGATCATCTGTATTATATTTATagaatta
atttatttttgtgacCCTTTTAAAGATTATTATCTCCTAGTGAGATTTTG
TATGGGATAGCCATTCTATACGGAACTTTGTTATTATAAtgatacttttt
tcaaaaatactgttttaattttacttttatcttttttttaccaGGTCTTC
GAAAGCGTCAAGAAACTTCTCGACAATAGGTAATGTCGTTAAACAGTTAT
CTACCTACTGAACATTAAGTGAAAACACCTATTTGTTCGTTCTGTTAAAA
TGTATTTGTTTTGTATATAATTTGTATAAGTTTCACAGTTGGATGTTTTT
TTATGTTATGCTGGGCACTCATCGAGGGTGTTGAATTATCGTTACTTTGG
CAACTTTTACGTACAAAGATGGTGCGGTTTTGTACATACCTTTAAAATTA
GGAGGAAGACCAAATGAGATATTTGTTTTACGTTGAAATCAACATTGGTC
TCTCATGGTAATTTAATTAGAGACATTTTTGGAATTATTTAAACAAATGA
GATGGGAGTTACAGTTACGCAGGGTTATCGGTTAATGGCAATATGGTTGG
CTATTTCTAGTCGCATCAAAGGCATAATTAGGGAATGTACTGTATCTAAA
AGATAAATATAATAGGGAGTATTTCTTTTACTTGGTGAATTAAAGATCGT
ATTTTTTtgctggaaaaaaaaaacagaaaaattctaACGGATTTTATCAT
TAACTTTTCCATGGGAAAAATAATTAATATCTTCTTGGGGGAATTTCACA
CCCATGTGTCAAAGACCCACTGGAAAGTTTGGCCAAAATGTTTCAATACC
CTAcattttagccccactggaaaattgacttagACTTCATTCCCAgttaa
aattcaaaagattttttgacctgaGAACAATTgaatttccatccccattg
ggatttcgatagaaatttttatcctcactatgggaagaagttccaccggg
gttTGGAGTTTGTTTTTTGAGTGATACAAGGGTGTCATGAAATTGGAAAG
TGTGAAATTGGAACGATATTATATTTTTACAAACTTTatgaattttactt
tttatgctTCCAAGAATCTATTGATAAGAGTTTGGGATATAATTGTCAAA
CGTAAATTATAAGCATGTTATACTGAACTAGTAACTGAGAAGAAAAATCC
TGAAACAAGTTTGCTTTTCTTTCTGTTACCTGTTATGATTTTAAAGTGAT
ATTTAGCCAAAGTAAGTTTTGATCTCTTTAATGTAAAAAGGGTTTTGTGC
CTTATTCTAGAGGTAGTCCATAGGGGATAGTGATAAGCTAATCCTCAAAA
TGGGGAAGatttaacaaaatttaataTGGGTATATTATTGTCCTCATATA
GAAACAGATTTTCGTTACAATGTAACTTTTAGGTGAATGCAAAATAATAG
GGAGAGAATTGAAGTAAAAAACGAAGTGTTTGAAACTaacaaattttttc
catttaaatTTCTTGTTCAAAATATCAACCTTCTGAATgtcctttttttc
tatttttaagttTCCAATCTACTAACCGACGCTTTGGTAACTAACTGAAC
CGAACGAACGAATGATAATCGGACGCTCGGAATGATAGATGTCCAATTTG
TTATagtctatttattttttatcatatGTTTTCTGTTCTGTTGACCAGAA
TGTGTGCTTTTTGTAatcaatcattttttaattcgtttttaatgcatttt
agaAAAACTAATAATAACAGAAGAGGAATGAAGGAATGCATCTGTCATCG
TCGTTCGACGAATGTTTCAAGAAAATATTGTCGTTaaaggtttttgaaaa
ttttaaaagaaccattcctatttcattgaaaagaagaaagatagactggA
ATTtggatgggtc

Coding sequence (CDS) from alignment at scaffold_358:660592..668754+

>TCONS_00061412 ID=TCONS_00061412|Name=TCONS_00061412|organism=Clytia hemisphaerica|type=CDS|length=4998bp|location=Sequence derived from alignment at scaffold_358:660592..668754+ (Clytia hemisphaerica)
ATGCTTGCATTATCTACAATACTCTTTAACAAGATCACAAGGCCAGTGGT
TTCGGCAATTTCATCATCACAAAATCTTTCAGCTTCAACAAGTGACAAAA
TGAACCTTGATGAAGATCTTTCAATCGTTATGTTTGTTCTTGGTGGACCA
GGTGCTGGAAAAGGGACACAGTGTACTAATTTAGTCAAGGAATATGGTTT
CGAACATCTATCGGCAGGTGATTTACTACGAGCTGAACGTAACAGTGGTT
CGAAAGACGGTGAACTTATACAACATTATATCAAAGAAGGAAAGATCGTC
CCTGTAGAAATCACCATCCGTCTACTAGAGAGGGCCATGAACGACagtcc
aaaatcaaaatttctgatcgatggTTTTCCACGTAATAAAGACAATTTAG
ATGGCTGGAACAAATTAATGACCGGAAAAGTTAACGTTATGGGCGTTCTT
TTTTTCAACTGCCCCGAAGATGTGTGCGTCAAACGAATCATGAAACGAAG
CGAAACGAGTGGACGCGCTGACGATAACGAAGAAAGTTTACGCAAACGAT
TTCGAACATATTACAACGAAACGATGCCGATTATCGATTCATTCAAAGCC
AACGGGCTCGTCATGAACGTCGATGCCACACCCACACCTGATCAGGTCTT
CGAAAGCGTCAAGAAACTTCTCGACAATAGttTCCAATCTACTAACCGAC
GCTTTGGTAACTAAATGCTTGCATTATCTACAATACTCTTTAACAAGATC
ACAAGGCCAGTGGTTTCGGCAATTTCATCATCACAAAATCTTTCAGCTTC
AACAAGTGACAAAATGAACCTTGATGAAGATCTTTCAATCGTTATGTTTG
TTCTTGGTGGACCAGGTGCTGGAAAAGGGACACAGTGTACTAATTTAGTC
AAGGAATATGGTTTCGAACATCTATCGGCAGGTGATTTACTACGAGCTGA
ACGTAACAGTGGTTCGAAAGACGGTGAACTTATACAACATTATATCAAAG
AAGGAAAGATCGTCCCTGTAGAAATCACCATCCGTCTACTAGAGAGGGCC
ATGAACGACagtccaaaatcaaaatttctgatcgatggTTTTCCACGTAA
TAAAGACAATTTAGATGGCTGGAACAAATTAATGACCGGAAAAGTTAACG
TTATGGGCGTTCTTTTTTTCAACTGCCCCGAAGATGTGTGCGTCAAACGA
ATCATGAAACGAAGCGAAACGAGTGGACGCGCTGACGATAACGAAGAAAG
TTTACGCAAACGATTTCGAACATATTACAACGAAACGATGCCGATTATCG
ATTCATTCAAAGCCAACGGGCTCGTCATGAACGTCGATGCCACACCCACA
CCTGATCAGGTCTTCGAAAGCGTCAAGAAACTTCTCGACAATAGttTCCA
ATCTACTAACCGACGCTTTGGTAACTAAATGCTTGCATTATCTACAATAC
TCTTTAACAAGATCACAAGGCCAGTGGTTTCGGCAATTTCATCATCACAA
AATCTTTCAGCTTCAACAAGTGACAAAATGAACCTTGATGAAGATCTTTC
AATCGTTATGTTTGTTCTTGGTGGACCAGGTGCTGGAAAAGGGACACAGT
GTACTAATTTAGTCAAGGAATATGGTTTCGAACATCTATCGGCAGGTGAT
TTACTACGAGCTGAACGTAACAGTGGTTCGAAAGACGGTGAACTTATACA
ACATTATATCAAAGAAGGAAAGATCGTCCCTGTAGAAATCACCATCCGTC
TACTAGAGAGGGCCATGAACGACagtccaaaatcaaaatttctgatcgat
ggTTTTCCACGTAATAAAGACAATTTAGATGGCTGGAACAAATTAATGAC
CGGAAAAGTTAACGTTATGGGCGTTCTTTTTTTCAACTGCCCCGAAGATG
TGTGCGTCAAACGAATCATGAAACGAAGCGAAACGAGTGGACGCGCTGAC
GATAACGAAGAAAGTTTACGCAAACGATTTCGAACATATTACAACGAAAC
GATGCCGATTATCGATTCATTCAAAGCCAACGGGCTCGTCATGAACGTCG
ATGCCACACCCACACCTGATCAGGTCTTCGAAAGCGTCAAGAAACTTCTC
GACAATAGttTCCAATCTACTAACCGACGCTTTGGTAACTAAATGCTTGC
ATTATCTACAATACTCTTTAACAAGATCACAAGGCCAGTGGTTTCGGCAA
TTTCATCATCACAAAATCTTTCAGCTTCAACAAGTGACAAAATGAACCTT
GATGAAGATCTTTCAATCGTTATGTTTGTTCTTGGTGGACCAGGTGCTGG
AAAAGGGACACAGTGTACTAATTTAGTCAAGGAATATGGTTTCGAACATC
TATCGGCAGGTGATTTACTACGAGCTGAACGTAACAGTGGTTCGAAAGAC
GGTGAACTTATACAACATTATATCAAAGAAGGAAAGATCGTCCCTGTAGA
AATCACCATCCGTCTACTAGAGAGGGCCATGAACGACagtccaaaatcaa
aatttctgatcgatggTTTTCCACGTAATAAAGACAATTTAGATGGCTGG
AACAAATTAATGACCGGAAAAGTTAACGTTATGGGCGTTCTTTTTTTCAA
CTGCCCCGAAGATGTGTGCGTCAAACGAATCATGAAACGAAGCGAAACGA
GTGGACGCGCTGACGATAACGAAGAAAGTTTACGCAAACGATTTCGAACA
TATTACAACGAAACGATGCCGATTATCGATTCATTCAAAGCCAACGGGCT
CGTCATGAACGTCGATGCCACACCCACACCTGATCAGGTCTTCGAAAGCG
TCAAGAAACTTCTCGACAATAGttTCCAATCTACTAACCGACGCTTTGGT
AACTAAATGCTTGCATTATCTACAATACTCTTTAACAAGATCACAAGGCC
AGTGGTTTCGGCAATTTCATCATCACAAAATCTTTCAGCTTCAACAAGTG
ACAAAATGAACCTTGATGAAGATCTTTCAATCGTTATGTTTGTTCTTGGT
GGACCAGGTGCTGGAAAAGGGACACAGTGTACTAATTTAGTCAAGGAATA
TGGTTTCGAACATCTATCGGCAGGTGATTTACTACGAGCTGAACGTAACA
GTGGTTCGAAAGACGGTGAACTTATACAACATTATATCAAAGAAGGAAAG
ATCGTCCCTGTAGAAATCACCATCCGTCTACTAGAGAGGGCCATGAACGA
CagtccaaaatcaaaatttctgatcgatggTTTTCCACGTAATAAAGACA
ATTTAGATGGCTGGAACAAATTAATGACCGGAAAAGTTAACGTTATGGGC
GTTCTTTTTTTCAACTGCCCCGAAGATGTGTGCGTCAAACGAATCATGAA
ACGAAGCGAAACGAGTGGACGCGCTGACGATAACGAAGAAAGTTTACGCA
AACGATTTCGAACATATTACAACGAAACGATGCCGATTATCGATTCATTC
AAAGCCAACGGGCTCGTCATGAACGTCGATGCCACACCCACACCTGATCA
GGTCTTCGAAAGCGTCAAGAAACTTCTCGACAATAGttTCCAATCTACTA
ACCGACGCTTTGGTAACTAAATGCTTGCATTATCTACAATACTCTTTAAC
AAGATCACAAGGCCAGTGGTTTCGGCAATTTCATCATCACAAAATCTTTC
AGCTTCAACAAGTGACAAAATGAACCTTGATGAAGATCTTTCAATCGTTA
TGTTTGTTCTTGGTGGACCAGGTGCTGGAAAAGGGACACAGTGTACTAAT
TTAGTCAAGGAATATGGTTTCGAACATCTATCGGCAGGTGATTTACTACG
AGCTGAACGTAACAGTGGTTCGAAAGACGGTGAACTTATACAACATTATA
TCAAAGAAGGAAAGATCGTCCCTGTAGAAATCACCATCCGTCTACTAGAG
AGGGCCATGAACGACagtccaaaatcaaaatttctgatcgatggTTTTCC
ACGTAATAAAGACAATTTAGATGGCTGGAACAAATTAATGACCGGAAAAG
TTAACGTTATGGGCGTTCTTTTTTTCAACTGCCCCGAAGATGTGTGCGTC
AAACGAATCATGAAACGAAGCGAAACGAGTGGACGCGCTGACGATAACGA
AGAAAGTTTACGCAAACGATTTCGAACATATTACAACGAAACGATGCCGA
TTATCGATTCATTCAAAGCCAACGGGCTCGTCATGAACGTCGATGCCACA
CCCACACCTGATCAGGTCTTCGAAAGCGTCAAGAAACTTCTCGACAATAG
ttTCCAATCTACTAACCGACGCTTTGGTAACTAAATGCTTGCATTATCTA
CAATACTCTTTAACAAGATCACAAGGCCAGTGGTTTCGGCAATTTCATCA
TCACAAAATCTTTCAGCTTCAACAAGTGACAAAATGAACCTTGATGAAGA
TCTTTCAATCGTTATGTTTGTTCTTGGTGGACCAGGTGCTGGAAAAGGGA
CACAGTGTACTAATTTAGTCAAGGAATATGGTTTCGAACATCTATCGGCA
GGTGATTTACTACGAGCTGAACGTAACAGTGGTTCGAAAGACGGTGAACT
TATACAACATTATATCAAAGAAGGAAAGATCGTCCCTGTAGAAATCACCA
TCCGTCTACTAGAGAGGGCCATGAACGACagtccaaaatcaaaatttctg
atcgatggTTTTCCACGTAATAAAGACAATTTAGATGGCTGGAACAAATT
AATGACCGGAAAAGTTAACGTTATGGGCGTTCTTTTTTTCAACTGCCCCG
AAGATGTGTGCGTCAAACGAATCATGAAACGAAGCGAAACGAGTGGACGC
GCTGACGATAACGAAGAAAGTTTACGCAAACGATTTCGAACATATTACAA
CGAAACGATGCCGATTATCGATTCATTCAAAGCCAACGGGCTCGTCATGA
ACGTCGATGCCACACCCACACCTGATCAGGTCTTCGAAAGCGTCAAGAAA
CTTCTCGACAATAGttTCCAATCTACTAACCGACGCTTTGGTAACTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_038528	XLOC_038528	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00061412-protein	TCONS_00061412-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_358	supercontig	scaffold_358:660592..668754 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.00518	6.42072	11.308	12.3132	10.7736	9.53897	25.7381	29.2628	44.2522	38.5525	43.6308	66.0497	29.3913	35.1024	18.135	19.9827	28.091	26.1425	10.0781	11.4137	19.1469	16.4915	13.4146	14.2002	31.3572	25.9478	53.1668	69.4254	3.59558	4.30541

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000850	Adenylat/UMP-CMP_kin
IPR006266	UMP_CMP_kinase
IPR033690	Adenylat_kinase_CS
IPR027417	P-loop_NTPase

Vocabulary: **Biological Process**
Term	Definition
GO:0006139	nucleobase-containing compound metabolic process
GO:0006221	pyrimidine nucleotide biosynthetic process
GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0019205	nucleobase-containing compound kinase activity
GO:0005524	ATP binding
GO:0004127	cytidylate kinase activity
GO:0009041	uridylate kinase activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:0006221	pyrimidine nucleotide biosynthetic process
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004127	cytidylate kinase activity
molecular_function	GO:0019205	nucleobase-containing compound kinase activity
molecular_function	GO:0009041	uridylate kinase activity

Blast

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BLAST of TCONS_00061412 vs. Swiss-Prot (Human)
Match: KCY (UMP-CMP kinase OS=Homo sapiens GN=CMPK1 PE=1 SV=3)

HSP 1 Score: 226.483 bits (576), Expect = 2.677e-71
Identity = 109/190 (57.37%), Postives = 145/190 (76.32%), Query Frame = 2

Query:  353 IVMFVLGGPGAGKGTQCTNLVKEYGFEHLSAGDLLRAER-NSGSKDGELIQHYIKEGKIVPVEITIRLLERAMN-----DSPKSKFLIDGFPRNKDNLDGWNKLMTGKVNVMGVLFFNCPEDVCVKRIMKRSETSGRADDNEESLRKRFRTYYNETMPIIDSFKANGLVMNVDATPTPDQVFESVKKLLD 904
            +V+FVLGGPGAGKGTQC  +V++YG+ HLSAG+LLR ER N  S+ GELI+ YIKEGKIVPVEITI LL+R M+     ++ K+KFLIDGFPRN+DNL GWNK M GK +V  VLFF+C  ++C++R ++R ++SGR+DDN ESL KR +TY   T PIID ++  G V  +DA+ + D+VF+ V ++ D
Sbjct:    4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFD 193

The following BLAST results are available for this feature:

BLAST of TCONS_00061412 vs. Swiss-Prot (Human)

BLAST of TCONS_00061412 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
KCY	2.677e-71	57.37	UMP-CMP kinase OS=Homo sapiens GN=CMPK1 PE=1 SV=3	[more]

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TCONS_00061412 (transcript) - C. hemisphaerica