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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061413 ID=TCONS_00061413|Name=TCONS_00061413|organism=Clytia hemisphaerica|type=transcript|length=3168bpRun BLAST on NCBI protein sequence of TCONS_00061413-protein >TCONS_00061413-protein ID=TCONS_00061413-protein|Name=TCONS_00061413-protein|organism=Clytia hemisphaerica|type=polypeptide|length=795bp MFTMSSAGTNTDLDQHQPIENLVQKNKSIYDGGGGVSDTAVKDIDSEKAIRun BLAST on NCBI transcript from alignment at scaffold_358:682862..696163+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061413 ID=TCONS_00061413|Name=TCONS_00061413|organism=Clytia hemisphaerica|type=transcript|length=13302bp|location=Sequence derived from alignment at scaffold_358:682862..696163+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_358:682862..696163+ >TCONS_00061413 ID=TCONS_00061413|Name=TCONS_00061413|organism=Clytia hemisphaerica|type=CDS|length=31044bp|location=Sequence derived from alignment at scaffold_358:682862..696163+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00061413 vs. Swiss-Prot (Human)
Match: MCLN1 (Mucolipin-1 OS=Homo sapiens GN=MCOLN1 PE=1 SV=1) HSP 1 Score: 280.796 bits (717), Expect = 4.325e-82 Identity = 185/523 (35.37%), Postives = 304/523 (58.13%), Query Frame = 3
Query: 987 LQYHFMTPFEKYKL-GRKPWKLGIQILKILIVTTQVILFGADRFASVAFIKNTHKSFRYMFLENF-DGTPD-FSLYTRRQLVKTIYHVNNVYHNITETPIGRYWYPSHPMEP------VELCEVIY-RLHNESQKIDYNQDPIKVCQSVS---------KHSNFTNMLENVNY-------FDRVVRMTIKFDLIGIYLNALILGHKPECMKLKIAIKIDNSKHDGRLRIVLKIKEHLLMKCHDRNYVFDSGSDHTIQGILIAFDALVITVCFISLVLCLRSVIKSIILAQAAEQYFEEYRHERLTKWDLVELINKWFPVIALSDLLSITGSIYKIYVDRRDIMYYNVTSVFXXXXXXXXXXXXXRFFTYVKNYNALLITLYVAAPNLLRXXXXXXXXXXXXXXXXWVVLGAYHEKFKTFLTTAECLYSLVNGDDMYPTFSSMPS---RNISIWVFSKIYLYIFVSLFIYLILSTFISIVGDAYERLKDYGRLPP--TRIERFIS-GRKSPK----RRSKHAAC 2447
L+Y FM+P +K++ GRKP KL +Q++KIL+VT Q+ILFG +V F + +FR++FL + DG D F+ YTR QL + I+H + Y + + +GRY Y +P + LC+ Y R H + ++ DP+ V + S+ +LE+ + F ++V +TI F L I L +LI P+C + I DN H GR+ I L+ + H+ +C + VF G D++ + + FD +VI C +S +LC RS+++ +L + R ++ W+ +E +N W+ ++ SD+L+I+G+I KI ++ +++ Y+V S+ LG +LVWVG++R+ T+ NYN L+ TL VA P+++RF C I+ G+ FCGW+VLG YH KF++ +ECL+SL+NGDDM+ TF++M + R+ +W+FS++YLY F+SLFIY++LS FI+++ AY+ +K G + ++ +I+ + SP RR +AC
Sbjct: 45 LKYFFMSPCDKFRAKGRKPCKLMLQVVKILVVTVQLILFGLSNQLAVTFREENTIAFRHLFLLGYSDGADDTFAAYTREQLYQAIFHAVDQYLALPDVSLGRYAYVRGGGDPWTNGSGLALCQRYYHRGHVDPANDTFDIDPMVVTDCIQVDPPERPPPPPSDDLTLLESSSSYKNLTLKFHKLVNVTIHFRLKTINLQSLINNEIPDCYTFSVLITFDNKAHSGRIPISLETQAHI-QECKHPS-VFQHG-DNSFR---LLFDVVVILTCSLSFLLCARSLLRGFLLQNEFVGFMWRQRGRVISLWERLEFVNGWYILLVTSDVLTISGTIMKIGIEAKNLASYDVCSILLGTSTLLVWVGVIRYLTFFHNYNILIATLRVALPSVMRFCCCVAVIYLGYCFCGWIVLGPYHVKFRSLSMVSECLFSLINGDDMFVTFAAMQAQQGRSSLVWLFSQLYLYSFISLFIYMVLSLFIALITGAYDTIKHPGGAGAEESELQAYIAQCQDSPTSGKFRRGSGSAC 561 The following BLAST results are available for this feature:
BLAST of TCONS_00061413 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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