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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061436 ID=TCONS_00061436|Name=TCONS_00061436|organism=Clytia hemisphaerica|type=transcript|length=1637bp
CCCTACCAATTCTCCAGACAATTCAAGCTAAACTTATCAAAAACTGATGG
CTGTTGGTACTCAAGCTGGTGGTAGTATGATATATACTTTTAGAGGAAAG
TGGATTGCTGGTTTTATTTTGGTTTGTGTTTGTGTTTTGCTATGGGTTCG
TCATACTGCTTTACAAAAATCACCTGCTGATGTTGTTGATTTTCAAGATC
CGAAAACAACACCATCTGCTTTTTATGCTAAGATACCTGGTTTCACAAAT
CAACTTGTTTCTTTTGACCGGATTAGTTCAACgtgttatcaaaacaaaag
accAGAAAGCATAGAGGACTTATCCAAATTTGTTGCCCTGTTACATCAAA
ATAGGCAACATAAATTATGTGGTGAGCAGTATAAGCTTTTCAAAGTGATT
TATGCAATAAGGACGAAACAAACAACAGTTGTTTTGTCTGAAACCTTTTt
accaaaagttcaaaaatggatGAACGGAAATCAAGAGCTTGTTGAAGCAA
CCAAGAAACAAACTATCATCTTTGTCGACAATAAATGGTCATTAGAAAGT
GTTGTTTTCAATCCAGTCCGTGCCAAAAGACCTGGTGGACAAGGACAAGG
TAGTGTTGCAGAATATGTAAACAATCTTATTGATAAAGCTAAAGAAGGAT
GTGATTTTTGTTCATACAAAAAGTATACAGCTGCAGATGATTTTGGCATG
TTAGAATCTGAGAGAACGGTTGCAATATCTAATACGTTCAAGATTGAGAA
ATACCATGGAATGATTGTCTTTAAACAGCACGATCCAGTACATTTTGACC
AAGATCAGTTTATAGATGCTATGGATCTAGCAATGAGATGGTTCAAGACT
GCGGCTGGTAGAGCAACTGATCATAAATATAGGCATATGTATTGGGATTG
TTTACCGAAAGCAAGTGCTAGTCAAGTTCACCCTCACATTCATTTAGCAC
TTGGGGACCATGCATATTATGCAAAATGGAATAGGTTACATAAAGCTGCA
CTCAAGTTCTCTGAGAGTGTACAAAATTGGAACTACTGGAATGCAATGCT
TCAAGTTCATAATGCCCTTGGTTTAAGTGCACACTTCAATTCTGCATCCA
TCATCTCGTACATCACACCACAAAAAGATTTAGAAGTTGtcattttggcc
aaaaaaccATCCCAAgattttttcagattattttatTTTGCAGTCCGTAC
ATTTATGGAGGACATGGGTCAATTTGCAATCAGCGCTGGCTGTGTCTTCC
CAAAACTTGATGCTAGCACAGACAATGGTGCTGAGCTACCAGCAATTTGT
CGTTTATTATCCAGAGGAGCTGCTGACTTACCAAGAAGTGATGTCAGCTC
TTTTGATTTATTTGGTACAGCTAATGTTAATAAGGATCCATTTGTTGTTA
TTAAGAAAGTCAAGACCGCTTTGGAAAGGTTAAAGACTTCTAAGTTCACA
TATCAACCCAAGGATATGGAATAGGTGttttttttatgtaatttttgtAT
CAGTTTATTGTAGGTATtagttttgtatatttttggtgGAATAATTACAT
GATTAAGATCAGTTCATTCataattgttttttatcttttacatAGTTTAT
TCATAATGTTATAGTAACTTGGTTTAATGTTGGCTAC Run BLAST on NCBI protein sequence of TCONS_00061436-protein >TCONS_00061436-protein ID=TCONS_00061436-protein|Name=TCONS_00061436-protein|organism=Clytia hemisphaerica|type=polypeptide|length=475bp
MAVGTQAGGSMIYTFRGKWIAGFILVCVCVLLWVRHTALQKSPADVVDFQ
DPKTTPSAFYAKIPGFTNQLVSFDRISSTCYQNKRPESIEDLSKFVALLH
QNRQHKLCGEQYKLFKVIYAIRTKQTTVVLSETFLPKVQKWMNGNQELVE
ATKKQTIIFVDNKWSLESVVFNPVRAKRPGGQGQGSVAEYVNNLIDKAKE
GCDFCSYKKYTAADDFGMLESERTVAISNTFKIEKYHGMIVFKQHDPVHF
DQDQFIDAMDLAMRWFKTAAGRATDHKYRHMYWDCLPKASASQVHPHIHL
ALGDHAYYAKWNRLHKAALKFSESVQNWNYWNAMLQVHNALGLSAHFNSA
SIISYITPQKDLEVVILAKKPSQDFFRLFYFAVRTFMEDMGQFAISAGCV
FPKLDASTDNGAELPAICRLLSRGAADLPRSDVSSFDLFGTANVNKDPFV
VIKKVKTALERLKTSKFTYQPKDME Run BLAST on NCBI transcript from alignment at scaffold_358:400472..404058- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061436 ID=TCONS_00061436|Name=TCONS_00061436|organism=Clytia hemisphaerica|type=transcript|length=3587bp|location=Sequence derived from alignment at scaffold_358:400472..404058- (Clytia hemisphaerica)
CCCTACCAATTCTCCAGACAATTCAAGGCAAATGTCCGGGGAATGAAAAA
GAATATTTTTATCCCCAGCCCAGACAAACAAACTGCGCAGCCAGATAAGT
GAACCTGTGATTGTGAGTTTTAACGCACAAACGATTGTGGTTTACAAATT
TACATGAATGAAAGCGGGTAAAATAGGGATGGTGAAATTGATGCCAATGC
AATCACCTGATTGTTTAAGTACGTCGCGCGGACCGCCCGTTCAGTCTGGG
GTAAGGGGTCACTCACAAAGCAATTTTGCTTTGGGTTAGAAAAACGTCAA
TTGACGTTTTAAAAGCTGAGCCACCCACCCACATCCTAAAACGTCAAACA
CCTGAAATCCCCAAATATCGATGAAAAACTGCCTTCATCAGCCATCTTGA
TTTTCACTAACGGCTTGCATAGTTTATATTTGAAAAAAAGAAACAGAGAT
CATTTCTAAAAACTTGTTCAATCACAAAATTCCCATAATTAATTATCTCT
GTAGTATATAGTGACAGAAAGAATGGCCATCTGCAAAAATTCAAGGGTCA
TTTGGGCCGTCAAACAAAGAAAAGACATAAACATTGGGCTGTTTGTTTTG
GTTTTCAAAACAGACGAAGCGATCAAACAGAAACATGGCGAGAAGTAATA
TTTGGCATGGAATGAAAAATCAATGTTTCTGGATTTGAAAAAAAACGTCA
ACAACCTTTAACCCATCCACCCACTAATGTCAATTGACGTTTTTCTAACC
TAAAATCGATTTGTGAACGACCCCTAAGTCTAAAAAAGTAATGTTAAAAT
TCCCGGACACGCAACAAGAAAATCCCCGGAGTCCGAGGAATCCGCTGGGT
CATATCGATAGCATAGAGTCCCCTGCCCAGTTAGTGACTGAAATTTTTTT
ATTCTAATTTTTCACTTACTTTTTACTTTTTTGAAAATCCTTTTCAACCA
ACGCTTAGACAACTTTTAACATGCTCTTTGTGTTTGTTTTGATTTTTTAT
TTGACAGGCTTGCTCTAAAATATATTAGAGAAAGAAATTAAAGAAATTAG
AGAAGAAAGTTATGGAGGAACAGAGTTAAAGTAACAAAGAAATTAGAGAA
GAAAGTTACAGAGGAATAGACAGGCTAGCTCTAAAGCTCTAAAACAGCAT
CTAGTAACATGAAAACCAGAATATGATTTTTCAATGGGGATCAAAACTTT
AAAGTGCACTCACAAATATCAATTTGTCAGATCTAACAAAATTAGTAACG
ATACTGTCATCATTTGACGATCAAACAAAGGATATTCTATCTCTGTCAAG
AACTTTACAAACATTCCGACAACTTTCATCAAAATATTCTATTGCAGCTA
AGTTCTACCATTTTGCGCAGTTTGAGGATTAAGCTGAGTTGAAAAAAGAA
CTCCCTCATGGGAAAGTTTTTTTCAATCTGTCAATCATTTTCTTAAGTAA
AAAGAACGCAAAATGATTCTAACTTTAGGAAAATGCCGCCAATCACAGTA
TTCAACTATAATAATTTTCCTTTTATTTTCATTTTTGAACTTTTGATTAT
CTTTTTGCTGTCTGTTAAAAGCATTATACAAAATTATCTTACAGCTAAAC
TTATCAAAAACTGATGGCTGTTGGTACTCAAGCTGGTGGTAGTATGATAT
ATACTTTTAGAGGAAAGTGGATTGCTGGTTTTATTTTGGTTTGTGTTTGT
GTTTTGCTATGGGTTCGTCATACTGCTTTACAAAAATCACCTGCTGATGT
TGTTGATTTTCAAGATCCGAAAACAACACCATCTGCTTTTTATGCTAAGA
TACCTGGTTTCACAAATCAACTTGTTTCTTTTGACCGGATTAGTTCAACG
TGTTATCAAAACAAAAGACCAGAAAGCATAGAGGACTTATCCAAATTTGT
TGCCCTGTTACATCAAAATAGGCAACATAAATTATGTGGTGAGCAGTATA
AGCTTTTCAAAGTGATTTATGCAATAAGGACGAAACAAACAACAGTTGTT
TTGTCTGAAACCTTTTTACCAAAAGTTCAAAAATGGATGAACGGAAATCA
AGAGCTTGTTGAAGCAACCAAGAAACAAACTATCATCTTTGTCGACAATA
AATGGTCATTAGAAAGTGTTGTTTTCAATCCAGTCCGTGCCAAAAGACCT
GGTGGACAAGGACAAGGTAGTGTTGCAGAATATGTAAACAATCTTATTGA
TAAAGCTAAAGAAGGATGTGATTTTTGTTCATACAAAAAGTATACAGCTG
CAGATGATTTTGGCATGTTAGAATCTGAGAGAACGGTTGCAATATCTAAT
ACGTTCAAGATTGAGAAATACCATGGAATGATTGTCTTTAAACAGCACGA
TCCAGTACATTTTGACCAAGATCAGTTTATAGATGCTATGGATCTAGCAA
TGAGATGGTTCAAGACTGCGGCTGGTAGAGCAACTGATCATAAATATAGG
CATATGTATTGGGATTGTTTACCGAAAGCAAGTGCTAGTCAAGTTCACCC
TCACATTCATTTAGCACTTGGGGACCATGCATATTATGCAAAATGGAATA
GGTTACATAAAGCTGCACTCAAGTTCTCTGAGAGTGTACAAAATTGGAAC
TACTGGAATGCAATGCTTCAAGTTCATAATGCCCTTGGTTTAAGTGCACA
GTAAGCTTATTAATAATTTGTTTTGATATTAAACAGACGTGTTTAGAATA
ACTGCCATCAAGTTGCAGCAGTGTATTGGTCATTTGCTCATTAAAAGGGT
CTATAGTCATGAAAGTAAGCTTCAGGGCTTCTTGTAACTCAACCGAATAT
AAACTTTTTTCGTTGATATTTTTTATTGTCTTTATGTAAACAAGACATGT
AACTTCAAAGTTTGAAGTTTTTACAATAATTCTTTTTTTAGAAGTTATAT
ACTCCTTTTTAAATTGAGAGAATATTGCCTACTAAACCAAAATTACCCAG
CCCCAAAAATGCAAGATGCTATTAGTATTTTGCCTTTATGTTTGAAGCTC
ATTATATAATTCCTTCTAATTTCATTACTTTAGCTTCAATTCTGCATCCA
TCATCTCGTACATCACACCACAAAAAGATTTAGAAGTTGTCATTTTGGCC
AAAAAACCATCCCAAGATTTTTTCAGATTATTTTATTTTGCAGTCCGTAC
ATTTATGGAGGACATGGGTCAATTTGCAATCAGCGCTGGCTGTGTCTTCC
CAAAACTTGATGCTAGCACAGACAATGGTGCTGAGCTACCAGCAATTTGT
CGTTTATTATCCAGAGGAGCTGCTGACTTACCAAGAAGTGATGTCAGCTC
TTTTGATTTATTTGGTACAGCTAATGTTAATAAGGATCCATTTGTTGTTA
TTAAGAAAGTCAAGACCGCTTTGGAAAGGTTAAAGACTTCTAAGTTCACA
TATCAACCCAAGGATATGGAATAGGTGTTTTTTTTATGTAATTTTTGTAT
CAGTTTATTGTAGGTATTAGTTTTGTATATTTTTGGTGGAATAATTACAT
GATTAAGATCAGTTCATTCATAATTGTTTTTTATCTTTTACATAGTTTAT
TCATAATGTTATAGTAACTTGGTTTAATGTTGGCTAC Coding sequence (CDS) from alignment at scaffold_358:400472..404058- >TCONS_00061436 ID=TCONS_00061436|Name=TCONS_00061436|organism=Clytia hemisphaerica|type=CDS|length=2856bp|location=Sequence derived from alignment at scaffold_358:400472..404058- (Clytia hemisphaerica)
CTTCAATTCTGCATCCATCATCTCGTACATCACACCACAAAAAGATTTAG
AAGTTGTCATTTTGGCCAAAAAACCATCCCAAGATTTTTTCAGATTATTT
TATTTTGCAGTCCGTACATTTATGGAGGACATGGGTCAATTTGCAATCAG
CGCTGGCTGTGTCTTCCCAAAACTTGATGCTAGCACAGACAATGGTGCTG
AGCTACCAGCAATTTGTCGTTTATTATCCAGAGGAGCTGCTGACTTACCA
AGAAGTGATGTCAGCTCTTTTGATTTATTTGGTACAGCTAATGTTAATAA
GGATCCATTTGTTGTTATTAAGAAAGTCAAGACCGCTTTGGAAAGGTTAA
AGACTTCTAAGTTCACATATCAACCCAAGGATATGGAATAGATGGCTGTT
GGTACTCAAGCTGGTGGTAGTATGATATATACTTTTAGAGGAAAGTGGAT
TGCTGGTTTTATTTTGGTTTGTGTTTGTGTTTTGCTATGGGTTCGTCATA
CTGCTTTACAAAAATCACCTGCTGATGTTGTTGATTTTCAAGATCCGAAA
ACAACACCATCTGCTTTTTATGCTAAGATACCTGGTTTCACAAATCAACT
TGTTTCTTTTGACCGGATTAGTTCAACGTGTTATCAAAACAAAAGACCAG
AAAGCATAGAGGACTTATCCAAATTTGTTGCCCTGTTACATCAAAATAGG
CAACATAAATTATGTGGTGAGCAGTATAAGCTTTTCAAAGTGATTTATGC
AATAAGGACGAAACAAACAACAGTTGTTTTGTCTGAAACCTTTTTACCAA
AAGTTCAAAAATGGATGAACGGAAATCAAGAGCTTGTTGAAGCAACCAAG
AAACAAACTATCATCTTTGTCGACAATAAATGGTCATTAGAAAGTGTTGT
TTTCAATCCAGTCCGTGCCAAAAGACCTGGTGGACAAGGACAAGGTAGTG
TTGCAGAATATGTAAACAATCTTATTGATAAAGCTAAAGAAGGATGTGAT
TTTTGTTCATACAAAAAGTATACAGCTGCAGATGATTTTGGCATGTTAGA
ATCTGAGAGAACGGTTGCAATATCTAATACGTTCAAGATTGAGAAATACC
ATGGAATGATTGTCTTTAAACAGCACGATCCAGTACATTTTGACCAAGAT
CAGTTTATAGATGCTATGGATCTAGCAATGAGATGGTTCAAGACTGCGGC
TGGTAGAGCAACTGATCATAAATATAGGCATATGTATTGGGATTGTTTAC
CGAAAGCAAGTGCTAGTCAAGTTCACCCTCACATTCATTTAGCACTTGGG
GACCATGCATATTATGCAAAATGGAATAGGTTACATAAAGCTGCACTCAA
GTTCTCTGAGAGTGTACAAAATTGGAACTACTGGAATGCAATGCTTCAAG
TTCATAATGCCCTTGGTTTAAGTGCACACTTCAATTCTGCATCCATCATC
TCGTACATCACACCACAAAAAGATTTAGAAGTTGTCATTTTGGCCAAAAA
ACCATCCCAAGATTTTTTCAGATTATTTTATTTTGCAGTCCGTACATTTA
TGGAGGACATGGGTCAATTTGCAATCAGCGCTGGCTGTGTCTTCCCAAAA
CTTGATGCTAGCACAGACAATGGTGCTGAGCTACCAGCAATTTGTCGTTT
ATTATCCAGAGGAGCTGCTGACTTACCAAGAAGTGATGTCAGCTCTTTTG
ATTTATTTGGTACAGCTAATGTTAATAAGGATCCATTTGTTGTTATTAAG
AAAGTCAAGACCGCTTTGGAAAGGTTAAAGACTTCTAAGTTCACATATCA
ACCCAAGGATATGGAATAGATGGCTGTTGGTACTCAAGCTGGTGGTAGTA
TGATATATACTTTTAGAGGAAAGTGGATTGCTGGTTTTATTTTGGTTTGT
GTTTGTGTTTTGCTATGGGTTCGTCATACTGCTTTACAAAAATCACCTGC
TGATGTTGTTGATTTTCAAGATCCGAAAACAACACCATCTGCTTTTTATG
CTAAGATACCTGGTTTCACAAATCAACTTGTTTCTTTTGACCGGATTAGT
TCAACGTGTTATCAAAACAAAAGACCAGAAAGCATAGAGGACTTATCCAA
ATTTGTTGCCCTGTTACATCAAAATAGGCAACATAAATTATGTGGTGAGC
AGTATAAGCTTTTCAAAGTGATTTATGCAATAAGGACGAAACAAACAACA
GTTGTTTTGTCTGAAACCTTTTTACCAAAAGTTCAAAAATGGATGAACGG
AAATCAAGAGCTTGTTGAAGCAACCAAGAAACAAACTATCATCTTTGTCG
ACAATAAATGGTCATTAGAAAGTGTTGTTTTCAATCCAGTCCGTGCCAAA
AGACCTGGTGGACAAGGACAAGGTAGTGTTGCAGAATATGTAAACAATCT
TATTGATAAAGCTAAAGAAGGATGTGATTTTTGTTCATACAAAAAGTATA
CAGCTGCAGATGATTTTGGCATGTTAGAATCTGAGAGAACGGTTGCAATA
TCTAATACGTTCAAGATTGAGAAATACCATGGAATGATTGTCTTTAAACA
GCACGATCCAGTACATTTTGACCAAGATCAGTTTATAGATGCTATGGATC
TAGCAATGAGATGGTTCAAGACTGCGGCTGGTAGAGCAACTGATCATAAA
TATAGGCATATGTATTGGGATTGTTTACCGAAAGCAAGTGCTAGTCAAGT
TCACCCTCACATTCATTTAGCACTTGGGGACCATGCATATTATGCAAAAT
GGAATAGGTTACATAAAGCTGCACTCAAGTTCTCTGAGAGTGTACAAAAT
TGGAACTACTGGAATGCAATGCTTCAAGTTCATAATGCCCTTGGTTTAAG
TGCACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061436-exon-scaffold_358-1575043694:404032..404058 | TCONS_00061436-exon-scaffold_358-1575043694:404032..404058 | Clytia hemisphaerica | exon |
| TCONS_00061436-exon-scaffold_358-1575043694:401409..402464 | TCONS_00061436-exon-scaffold_358-1575043694:401409..402464 | Clytia hemisphaerica | exon |
| TCONS_00061436-exon-scaffold_358-1575043694:400472..401025 | TCONS_00061436-exon-scaffold_358-1575043694:400472..401025 | Clytia hemisphaerica | exon |
| TCONS_00061436-exon-scaffold_358-1510915933:404032..404058 | TCONS_00061436-exon-scaffold_358-1510915933:404032..404058 | Clytia hemisphaerica | exon |
| TCONS_00061436-exon-scaffold_358-1510915933:401409..402464 | TCONS_00061436-exon-scaffold_358-1510915933:401409..402464 | Clytia hemisphaerica | exon |
| TCONS_00061436-exon-scaffold_358-1510915933:400472..401025 | TCONS_00061436-exon-scaffold_358-1510915933:400472..401025 | Clytia hemisphaerica | exon |
| TCONS_00061436-exon-scaffold_358-1491911889:404032..404058 | TCONS_00061436-exon-scaffold_358-1491911889:404032..404058 | Clytia hemisphaerica | exon |
| TCONS_00061436-exon-scaffold_358-1491911889:401409..402464 | TCONS_00061436-exon-scaffold_358-1491911889:401409..402464 | Clytia hemisphaerica | exon |
| TCONS_00061436-exon-scaffold_358-1491911889:400472..401025 | TCONS_00061436-exon-scaffold_358-1491911889:400472..401025 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_358 | supercontig | scaffold_358:400472..404058 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011146 | HIT-like |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003824 |
catalytic activity |
Blast
The following BLAST results are available for this feature:
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