TCONS_00061444 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061444
Unique NameTCONS_00061444
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length476

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061444 ID=TCONS_00061444|Name=TCONS_00061444|organism=Clytia hemisphaerica|type=transcript|length=476bp
GGCGAAAAATTAGAGAGACGATCAGCAAGACATTTCCAGAGATTCCCAAA
GAAACATTAACATCCTTGATACCAAACAAAGAAGAAATGAGTGTCATGAA
GATTTTGACGTATAGTGAGCGCAATGTCACTTGTTATTGTCTGAAAAAGA
ATCCTATCTTTTTTGAAGTAGAGGGGTGCATTCTACCGACAGTTTACACT
TTATGGCAGCATCCGAACTTAATCTTGTCATTCAGAACATTTCCAAATGT
ACTCAATAATTTACAAGGAGGTGCAGATTTGATGTTTCCTGGTATTATTC
CACCTGCAACTGGATTTGGTGATTTCCACAAAGATCAAATTGCCGCCGTA
ACACTGCTTGGGAACGGAGCAGCAGTAGCAGTGGGAATCACAACCTGCAG
TAAACGTGATATTGAAACCGGTGGTCCACAAGGAAAGAAATTGACCATAT
ACCATTGTGTCAAAGATCATCTGTGG
Run BLAST on NCBI

protein sequence of TCONS_00061444-protein

>TCONS_00061444-protein ID=TCONS_00061444-protein|Name=TCONS_00061444-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
RKIRETISKTFPEIPKETLTSLIPNKEEMSVMKILTYSERNVTCYCLKKN
PIFFEVEGCILPTVYTLWQHPNLILSFRTFPNVLNNLQGGADLMFPGIIP
PATGFGDFHKDQIAAVTLLGNGAAVAVGITTCSKRDIETGGPQGKKLTIY
HCVKDHLW
Run BLAST on NCBI

transcript from alignment at scaffold_358:446398..450053-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061444 ID=TCONS_00061444|Name=TCONS_00061444|organism=Clytia hemisphaerica|type=transcript|length=3656bp|location=Sequence derived from alignment at scaffold_358:446398..450053- (Clytia hemisphaerica)
GGCGAAAAATTAGAGAGACGATCAGCAAGACATTTCCAGAGATTCCCAAA
GAAACATTAACATCCTTGATACCAAACAAAGAAGAAATGAGTGTCATGAA
GATTTTGACGTATAGTGAGCGCAATGTCACTTGTTATTGTCTGAAAAAGA
ATCCTATCTTTTTTGAAGTAGAGGGGTGCATTCTACCGACAGGTTAGTCC
CCTGGTTTGGATTGTGTATTGAAAGGACTTTTTTAACACCTTTAACAGTC
TTTCCTCTGTTTCTTCTTCGTTTTTAGAACAATTTTGTAACAATTTCTTA
GAAATTCCTTAAAAGTGAATAAAATACTTTGAGTTTACACTTAAAGGCAC
AAGGCTTACAGTTTTTCAAACGTGTTCCGTAAGTTGATTTTTCTACTTGA
CAATCGAATGTCTTCAGTACCGTGGTGCCCCCCCCCCCAGCGACCGATTT
TCTTTTTTTTTTGGAGGGGGTAGAGGCGCCAAAATAAAAAGGGCGCAAAA
AACGCCTCTGATTACTAATTTCGGCGCCCGTTTGCTCTTATACACCTTAG
ATAAGGCAGTTTTCGGCCGAAAAGAGAAATATCCCCCAATTTTCGTGCTC
GCATTGCTCGCGTTATTTCTAAAAAGAGATTTACTTTTCATAGGGCGGGG
TTTTGCCAAAATAAAAAAATTTTCTAAAATTGCCTCCCCAGTTTGTCCGA
ACTTTAGTCGACCCACCACAGTACTGAATGTCTTCATTCTAAAAATTACA
TTTAATTATACATTATACAGACCATTGATTTAAAACGCGTTGATGTAAGG
AAGAATTGAGTTAGGAATGTATATGAATGGTCTAAATTTCTAATGGGAAA
AAGAAAAATTTAGCTTATTGCTTTTACAAGTTTCAGTTCACGTGTTTTGG
CTTGCGATCATTTTTACCGAGTTTGTCATAAAAAAAGTTTTCTCTATGTT
TTAGTTTACACTTTATGGCAGCATCCGAACTTAATCTTGTCATTCAGAAC
ATTTCCAAATGTACTCAATAATTTACAAGGAGGTGCAGGTAGGTGGATGA
TATATATTTTCAAACACGAATTCTTTAATGCGCCAAAATAAGTAGGTAGA
ATTTAACGGTATTGAAATTAACACGACAAATTATTAAATATCATTTAACG
TTTCTCCTACCATTTGTTCACGCAGCATTTTTAAACAAAAGAAAGAAATT
TCTCCCCCTCTCAAGCCGCGCGAGCGAGCTGAAATTTTGAGAAAGTCTCT
TGTTAATTCTACTTAAAAGACAGGCGCGCCTGAATAGAATAGCTGGGTGT
AAACTTTTAGCGTGAGTGGTAATTAATGAATTCCGCTTACAATGATTTTC
CGTGGAGGTAATAAAAATATAGATGGAGGTACCACTCCTACTATTCTAGT
GTATTGTATCGTTGATAGCAAACTGTTGCTTTGTTGCTTTGGGGAAAAGC
CATTAATTTTGCTTTCGCTCATGGGAATACTTGAGTCGAAGAGAATTTGA
ATAAAACCACGCTACATTTTTAATTTGTTCATTGTGTGATGACAGTTTTG
TTGATAAAAGATAAGAAAACCATGCAATAATAAGCACAGAACATCGAATT
TGAAATATTCGCTGCTCAGGGAATCCTCGACAAATTTTGTCAATTTTTAC
ATATTTACTAATGCCAATCTTTCAACTATATTCTATCAAAATTTTGAGGC
AGCTGCTATTTTAGATCTAAAGATATTTATAGCAAAGAACCTTCCGCAAA
CAACAAAGAATTCGCAATATTTGAAGAAGTTTACCTCTCGAAAGTTTCCC
GATAAAATAAAAACTTCTTTTAAAACTATAAAGAAATTATTACTCGAAAA
AAATTCGCATTTTACCTAAAAATACGAGGTTTCTTTGGACAGAATAACTT
TACTTTAGTTCTTATAATCTATATCGTGACTGATTTTTGCTATCAAGGTG
ATCAAAGGAGGCCGATTTGAAAGAAATTTCTAAAGAGTTTTATGACTTCT
ACAGAAAAGTTATTACTCCATCTAACTTTTATTACCTCTATGGATTTTCT
AATATTACTGATTTTACTGCTTTTCTTCGCCTTACGGGACTATTTTTCAA
GTTAAAATCACGGGCTTCTGAAAAATCTACCACTGCAAGTGGTTTTTCTC
AGCTAAGGTTGCACATTTCCAATTCGAAATTTGCTTGCATTGCTTTGACG
TTTTTCTCAAAGAAGGCTAAAACAAAAAGCCGACAAAACGATTCCACGAA
CACTGATTTGAGTCTATGGTAGTTAAAAGGATTTTTTGTCCGTCTGAATG
AGCCGTCTACCATACTAGACTAGTAAACCAGGTAACATTTCTCTTTTTTT
TCTCGACAGATTTGATGTTTCCTGGTATTATTCCACCTGCAACTGGATTT
GGTGATTTCCACAAAGATCAAATTGCCGCCGTAACACTGCTTGGGAACGG
GTAAATTAAACTTGATTCAATTCTTTATTTACTATCTTTGTACCAAAACA
TTTCTTAGCAGTTTACAGTAGCTTTATTCAGGAAATGCACCACTGCATCA
TTTTTGCCTTTTCATCCTTTTATGTCCCTTATTACTTCTGAAAAGATGGG
GAATGCGTGGAACTTGCCTTCCCCGCAATGACTGGCTCCCTAGCTTCCTA
GCTAAATTCTTACTGTCCGTCTATTCAAATAATATTAAAATAGGCTAGAA
GAATAGTCAAATTTGACCGACATTTTTATTCTTATTCTGTGGATGATTTG
CATGTGTTTTTTTTCGTTTGTTCGGCTTCTCAATATTAGAATCTGCCCAA
ACTGTTTGACCTAACTCGGAGGTCCTTTAAATTAACCCGGATGTCCGTTC
CATCGTTCTTCTGTTCGTCCGTCTGTTACCAGCTTTTCTCGGGATTGGCT
CATTAGTTCTTTCTGATTTTTTTGCACAATGATGTAAAGCGACAAAGCTC
AAAATGTGATTTTTAAAGAAATCTTTTTTGGGCAAATTTGGTCCAAAAAC
CACCCAAAAATAGGGTTTTTCGAACAAAATTTGTTACGTAGAATTTCCTG
ATTTTTTCCAGAAAGATACATAATAATGTGTGCTAAAAAATGGCCGAAAC
AACTTTTTCCGGAAAATTCTTATTCGCCGTAAAAAATTTTACGTGATTTT
TTTTATGTCAAAATCTTGAGCTTCTAAAAAATCTAAAAGTTTTTCTTCGA
TAAGATTGCACATTTCTAATTCGAAATTGCTTGCGGACAACAGTATTGTT
TTTCCTATCACCTTTTAACCATTCAGCGAAGAGTGATGTGCTTTTTATTT
AATTTTTCCTTCTCATTATTGTATTTTGCTTCTGTGCTGGACATTATTAT
CTTTCTTTTCTGGTTTTATTTTTATGTGACTCTCATCATCAAGTAGGTCC
ATTTTAGCATGTGGTTTGTACATATCATAGAAAATCATGTAACAGACTAT
ACAAATCTCCATCTCACCTAATTCGAACAAATCCCTCTTAAGATTTCAAG
TTAAAGAAACTCGACTTTGAATTCCATAACTGTCCATCTTTTTTCAGAGC
AGCAGTAGCAGTGGGAATCACAACCTGCAGTAAACGTGATATTGAAACCG
GTGGTCCACAAGGAAAGAAATTGACCATATACCATTGTGTCAAAGATCAT
CTGTGG

Coding sequence (CDS) from alignment at scaffold_358:446398..450053-

>TCONS_00061444 ID=TCONS_00061444|Name=TCONS_00061444|organism=Clytia hemisphaerica|type=CDS|length=1896bp|location=Sequence derived from alignment at scaffold_358:446398..450053- (Clytia hemisphaerica)
AGCAGCAGTAGCAGTGGGAATCACAACCTGCAGTAAACGTGATATTGAAA
CCGGTGGTCCACAAGGAAAGAAATTGACCATATACCATTGTGTCAAAGAT
CATCTGTGGATTTGATGTTTCCTGGTATTATTCCACCTGCAACTGGATTT
GGTGATTTCCACAAAGATCAAATTGCCGCCGTAACACTGCTTGGGAACGG
TTTACACTTTATGGCAGCATCCGAACTTAATCTTGTCATTCAGAACATTT
CCAAATGTACTCAATAATTTACAAGGAGGTGCAGCGAAAAATTAGAGAGA
CGATCAGCAAGACATTTCCAGAGATTCCCAAAGAAACATTAACATCCTTG
ATACCAAACAAAGAAGAAATGAGTGTCATGAAGATTTTGACGTATAGTGA
GCGCAATGTCACTTGTTATTGTCTGAAAAAGAATCCTATCTTTTTTGAAG
TAGAGGGGTGCATTCTACCGACAGAGCAGCAGTAGCAGTGGGAATCACAA
CCTGCAGTAAACGTGATATTGAAACCGGTGGTCCACAAGGAAAGAAATTG
ACCATATACCATTGTGTCAAAGATCATCTGTGGATTTGATGTTTCCTGGT
ATTATTCCACCTGCAACTGGATTTGGTGATTTCCACAAAGATCAAATTGC
CGCCGTAACACTGCTTGGGAACGGTTTACACTTTATGGCAGCATCCGAAC
TTAATCTTGTCATTCAGAACATTTCCAAATGTACTCAATAATTTACAAGG
AGGTGCAGCGAAAAATTAGAGAGACGATCAGCAAGACATTTCCAGAGATT
CCCAAAGAAACATTAACATCCTTGATACCAAACAAAGAAGAAATGAGTGT
CATGAAGATTTTGACGTATAGTGAGCGCAATGTCACTTGTTATTGTCTGA
AAAAGAATCCTATCTTTTTTGAAGTAGAGGGGTGCATTCTACCGACAGAG
CAGCAGTAGCAGTGGGAATCACAACCTGCAGTAAACGTGATATTGAAACC
GGTGGTCCACAAGGAAAGAAATTGACCATATACCATTGTGTCAAAGATCA
TCTGTGGATTTGATGTTTCCTGGTATTATTCCACCTGCAACTGGATTTGG
TGATTTCCACAAAGATCAAATTGCCGCCGTAACACTGCTTGGGAACGGTT
TACACTTTATGGCAGCATCCGAACTTAATCTTGTCATTCAGAACATTTCC
AAATGTACTCAATAATTTACAAGGAGGTGCAGCGAAAAATTAGAGAGACG
ATCAGCAAGACATTTCCAGAGATTCCCAAAGAAACATTAACATCCTTGAT
ACCAAACAAAGAAGAAATGAGTGTCATGAAGATTTTGACGTATAGTGAGC
GCAATGTCACTTGTTATTGTCTGAAAAAGAATCCTATCTTTTTTGAAGTA
GAGGGGTGCATTCTACCGACAGAGCAGCAGTAGCAGTGGGAATCACAACC
TGCAGTAAACGTGATATTGAAACCGGTGGTCCACAAGGAAAGAAATTGAC
CATATACCATTGTGTCAAAGATCATCTGTGGATTTGATGTTTCCTGGTAT
TATTCCACCTGCAACTGGATTTGGTGATTTCCACAAAGATCAAATTGCCG
CCGTAACACTGCTTGGGAACGGTTTACACTTTATGGCAGCATCCGAACTT
AATCTTGTCATTCAGAACATTTCCAAATGTACTCAATAATTTACAAGGAG
GTGCAGCGAAAAATTAGAGAGACGATCAGCAAGACATTTCCAGAGATTCC
CAAAGAAACATTAACATCCTTGATACCAAACAAAGAAGAAATGAGTGTCA
TGAAGATTTTGACGTATAGTGAGCGCAATGTCACTTGTTATTGTCTGAAA
AAGAATCCTATCTTTTTTGAAGTAGAGGGGTGCATTCTACCGACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038545XLOC_038545Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061444-exon-scaffold_358-1575043694:449862..450053TCONS_00061444-exon-scaffold_358-1575043694:449862..450053Clytia hemisphaericaexon
TCONS_00061444-exon-scaffold_358-1575043694:449016..449099TCONS_00061444-exon-scaffold_358-1575043694:449016..449099Clytia hemisphaericaexon
TCONS_00061444-exon-scaffold_358-1575043694:447604..447694TCONS_00061444-exon-scaffold_358-1575043694:447604..447694Clytia hemisphaericaexon
TCONS_00061444-exon-scaffold_358-1575043694:446398..446506TCONS_00061444-exon-scaffold_358-1575043694:446398..446506Clytia hemisphaericaexon
TCONS_00061444-exon-scaffold_358-1510915933:449862..450053TCONS_00061444-exon-scaffold_358-1510915933:449862..450053Clytia hemisphaericaexon
TCONS_00061444-exon-scaffold_358-1510915933:449016..449099TCONS_00061444-exon-scaffold_358-1510915933:449016..449099Clytia hemisphaericaexon
TCONS_00061444-exon-scaffold_358-1510915933:447604..447694TCONS_00061444-exon-scaffold_358-1510915933:447604..447694Clytia hemisphaericaexon
TCONS_00061444-exon-scaffold_358-1510915933:446398..446506TCONS_00061444-exon-scaffold_358-1510915933:446398..446506Clytia hemisphaericaexon
TCONS_00061444-exon-scaffold_358-1491911889:449862..450053TCONS_00061444-exon-scaffold_358-1491911889:449862..450053Clytia hemisphaericaexon
TCONS_00061444-exon-scaffold_358-1491911889:449016..449099TCONS_00061444-exon-scaffold_358-1491911889:449016..449099Clytia hemisphaericaexon
TCONS_00061444-exon-scaffold_358-1491911889:447604..447694TCONS_00061444-exon-scaffold_358-1491911889:447604..447694Clytia hemisphaericaexon
TCONS_00061444-exon-scaffold_358-1491911889:446398..446506TCONS_00061444-exon-scaffold_358-1491911889:446398..446506Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061444-proteinTCONS_00061444-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_358supercontigscaffold_358:446398..450053 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.9313	19.0474	7.82332	5.59323	12.5631	10.4783	9.3136	11.675	9.40561	5.63136	7.26951	7.07954	5.03321	5.06599	11.3177	8.33997	12.0177	10.6329	4.23749	3.25176	3.5972	0	13.5594	11.4711	9.28285	8.11105	4.19057	4.08339	7.81651	9.91717
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002478PUA
IPR015947PUA-like_domain
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
Blast
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BLAST of TCONS_00061444 vs. Swiss-Prot (Human)
Match: EIF2D (Eukaryotic translation initiation factor 2D OS=Homo sapiens GN=EIF2D PE=1 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 6.055e-40
Identity = 63/158 (39.87%), Postives = 99/158 (62.66%), Query Frame = 3 
Query:    3 RKIRETISKTFPEIPKETLTSLIPNKEEMSVMKILTYSERNVTCYCLKKNPIFFEVEGCILPTVYTLWQHPNLILSFRTFPNVLNNLQGGADLMFPGIIPPATGFGDFHKDQIAAVTLLGNGAAVAVGITTCSKRDIETGGPQGKKLTIYHCVKDHLW 476
            RK+R  ++  FP +  + ++ L+P KEE++++K+  +    VT Y    NPI FE+E  + PTVYTLW +P+L+ +F T+P VL  L GGADLM PG++ P  G     K  + A++L+GN A VA+G+   S  ++ T G +G+  ++ H  +DHLW
Sbjct:   20 RKLRADVTTAFPTLGTDQVSELVPGKEELNIVKLYAHKGDAVTVYVSGGNPILFELEKNLYPTVYTLWSYPDLLPTFTTWPLVLEKLVGGADLMLPGLVMPPAGLPQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHLW 177
The following BLAST results are available for this feature:
BLAST of TCONS_00061444 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EIF2D6.055e-4039.87Eukaryotic translation initiation factor 2D OS=Hom... [more]
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