TCONS_00061446 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061446
Unique NameTCONS_00061446
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1298

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061446 ID=TCONS_00061446|Name=TCONS_00061446|organism=Clytia hemisphaerica|type=transcript|length=1298bp
ttagtcaaataaaaaggaaaaataaaaaaaggaacaGATCATTTACAATG
GGGACTCTATCAAGAATTATTGGTATGTCCTTTTTGGCTGCCATTGGTAT
TCTGCTGGTCGTCCTCGGATGTGTTTTAGATgaattcaaaacagaaaaag
GaccatGGTGGATAATGTTTAACTTATTTTTCTACATACTTGCACCAATC
CCTACATTGATTTGCAAAAGACTTGGGAATGATTTTTCCTCGTTCAGTGG
AACATCAAAtTTGGTTATTGAAATTGCTTTGTTTTTAACCACCGGAATCG
TCATATCAGCATTTGgaTTACCTGTTGTTTTGGCCAGAGCAAGTGTTGTA
AGTTATGATCTGCAAATatggttaatttttttttctctatttgaAACGAT
ACTGGGTTGTGGTTCATAGTGTTTTGACCCTTAAAAGTAAGAAGCCGTAC
ACATGAGTTTTAAGTTTGGAAAATTCCTGACCTTCCTTTTGAATTATCTT
AAAAATTACTTTTGATAATAGATACTTTTAAAGACTATGCAGTTACCTAA
CTTATAAACTTTCTAAATGTAGCTCTTTCCCTCCTGCACAAAAACCATTA
TAACCATATGCTTTACGACAtaacatattatttaaaaacgaCAAAATCGT
TTATTGAAAAATGTAGATTTTGCTTTCAGGGGCACTCACATATTAAAGTT
TTCCACGCCTTTTATAGTGTCAACCACCAAGAATTGATGAAATTCTTTGC
TTCTTCTATTTAATCGTTATTTTTTATTAATCCttttcttaaaatacaat
tttgtagATCAAATATGGTGCTATGGCTTGTGTAATGATTGGCAATCTGT
TCATCTTTGGtacaattcttttatttttcacagTGTTTGACCAAGAAGAT
GATTTTGGATTTTAATGACATGTGTTACATCTTAATTATTCATCGTGTGA
TATATTTGGCAAAGTTTGATCCATTTTGTCCACACAGCAAAGAGCTTCAG
CTCAATACTAAAAAATCTCCTGTTATTTTGCATAAaagcttttttcaaaa
ctttcaatgatttttctatgctatactttcaattttggcttaaaatttgg
tcctataattgaaatttcaatattgTAGAAAAGCTGTTCTTTAATGCAAA
GCCAAGATGGAAAACCTCAATTTACTCTAATCTTTGGTCCTCATTTCATC
GTCTAAGTACAAAGGCTCAATTATTTTGGTTATTGCCATTTAAAACGATT
TTTATCTTTCTCAATCTATTTTTCTACTGAGCATTTTAGTTATCTGAA
Run BLAST on NCBI

transcript from alignment at scaffold_358:452098..454764-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061446 ID=TCONS_00061446|Name=TCONS_00061446|organism=Clytia hemisphaerica|type=transcript|length=2667bp|location=Sequence derived from alignment at scaffold_358:452098..454764- (Clytia hemisphaerica)
TTAGTCAAATAAAAAGGAAAAATAAAAAAAGGAACAGATCATTTACAATG
GGGACTCTATCAAGGTAAGAAGAAGTATTGATTGGAAGCCTTTTTATTTA
GAAGTTTCAGTTATTTATGGTCAAATAAATTTAGCCAGATTTTATCAAAA
CATGCCTGAACATGCCTTTTATTCATAATGTTTCAAAGTGACACAATACC
GTGAACATTTTTTGGATAGATTGAATCTTTGTTGCGTCTTAATCCTTCAA
AAATTGTGATATGAGAATTTGTTCAATCTAAAACAATGAAAATATATTCA
TTCATTCATTCTAAAGTGATTCTCTATCTTAGAATTATTGGTATGTCCTT
TTTGGCTGCCATTGGTATTCTGCTGGTCGTCCTCGGATGTGTTTTAGATG
AATTCAAAACAGAAAAAGGGTAAAACATTATCAACCTTGAGATCCTTTTT
TATTGTTTTTTTTTTTGCTAGAAGCACTTGTCTTCCTGTCTCAAAGGCAT
AAATTTAACTTTTTGAAATACATAATTAATAGTTCTTTATAGAACTATTT
TACTTCTAATTGATTTTAACTTTTAGCAGTTGCTTCATTTTTCTGTCTTA
CATTTAGTCCTATAGGTTCATTTTTCAACAGTTTCTTTATTAACTCTATA
AATCCTAAATTTTTTTCAGACCATGGTGGATAATGTTTAACTGTAAGATA
GCTTTTTTAATTTGAAATTTTATGCTCCAAGAGTTTCTTCTTAAGAAAAT
ATTGAGAACTGTCCCTGTTAATCCACTTCCTGAACAAACTTAGAGACAGT
TTTTTTAAATGATTTTTACTACTCTATTAATAACATAAAATTTGATAGTT
TTATGAATAATTGTGTGTTCTCAATCAGAAAGGGTTCATTATCATAGAAA
ATAAGTGAAAACGAACCCCTTTATTCAGTCAAGAAAACATATTTATATTT
TCATCTCACTATTCAATTCTTGGCTTGTTTTAGTATTTTTCTACATACTT
GCACCAATCCCTACATTGATTTGCAAAAGACTTGGGAATGATTTTTCCTC
GTTCAGTGGAACATCAAAGTAAGAAAAAACACTTTGTATATATATCATCA
CATGATAACGAATGCAATTCGAGAGAAAAAATCACGAGTTTCTCTTCTCT
TTATGTTTTTCTTTTATTTATAGTTATTACACGGTACCGAGTACAATTAT
ATGGAATATATTTTTTGAGTTCAGATTTTTCGTCATATTTATTTATGATA
ATGTTGTTTATCTTCAACATGCAAAAAGATGAGTAATCTGATTGACTAAA
AATGCGTACATAAATGAAATGCTGTATTTCATATTGTACTGTGCAAATGC
GAGACCACCTTCAAAAATAGGGGTCATTTTATGACTAGAAATGTTTTCTT
TTCGCTTACAATACACAACACAACAATTTATTTATAATTTTTAGTTTGGT
TATTGAAATTGCTTTGTTTTTAACCACCGGAATCGTCATATCAGCATTTG
GTAAGTTTTCGAATCTAACTAATGATGATTTCTAATACGCAAATTATTTG
TATTTTCATAATTGCGTATGCTATAAGTTTTTTACCAAAATCTTTGTCTC
AGAATTCAACAGATCTTCTTGGGAGAAACTGTCAAAAATTTGATCATTAA
TTTTATTATTCAAATAATTTTTTTGTTTTTTCAGGATTACCTGTTGTTTT
GGCCAGAGCAAGTGTTGTAAGTTATGATCTGCAAATATGGTTAATTTTTT
TTTCTCTATTTGAAACGATACTGGGTTGTGGTTCATAGTGTTTTGACCCT
TAAAAGTAAGAAGCCGTACACATGAGTTTTAAGTTTGGAAAATTCCTGAC
CTTCCTTTTGAATTATCTTAAAAATTACTTTTGATAATAGATACTTTTAA
AGACTATGCAGTTACCTAACTTATAAACTTTCTAAATGTAGCTCTTTCCC
TCCTGCACAAAAACCATTATAACCATATGCTTTACGACATAACATATTAT
TTAAAAACGACAAAATCGTTTATTGAAAAATGTAGATTTTGCTTTCAGGG
GCACTCACATATTAAAGTTTTCCACGCCTTTTATAGTGTCAACCACCAAG
AATTGATGAAATTCTTTGCTTCTTCTATTTAATCGTTATTTTTTATTAAT
CCTTTTCTTAAAATACAATTTTGTAGATCAAATATGGTGCTATGGCTTGT
GTAATGATTGGCAATCTGTTCATCTTTGGTACAATTCTTTTATTTTTCAC
AGTGTTTGACCAAGAAGATGATTTTGGATTTTAATGACATGTGTTACATC
TTAATTATTCATCGTGTGATATATTTGGCAAAGTTTGATCCATTTTGTCC
ACACAGCAAAGAGCTTCAGCTCAATACTAAAAAATCTCCTGTTATTTTGC
ATAAAAGCTTTTTTCAAAACTTTCAATGATTTTTCTATGCTATACTTTCA
ATTTTGGCTTAAAATTTGGTCCTATAATTGAAATTTCAATATTGTAGAAA
AGCTGTTCTTTAATGCAAAGCCAAGATGGAAAACCTCAATTTACTCTAAT
CTTTGGTCCTCATTTCATCGTCTAAGTACAAAGGCTCAATTATTTTGGTT
ATTGCCATTTAAAACGATTTTTATCTTTCTCAATCTATTTTTCTACTGAG
CATTTTAGTTATCTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038546XLOC_038546Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061446-exon-scaffold_358-1575043694:454701..454764TCONS_00061446-exon-scaffold_358-1575043694:454701..454764Clytia hemisphaericaexon
TCONS_00061446-exon-scaffold_358-1575043694:454346..454432TCONS_00061446-exon-scaffold_358-1575043694:454346..454432Clytia hemisphaericaexon
TCONS_00061446-exon-scaffold_358-1575043694:454073..454095TCONS_00061446-exon-scaffold_358-1575043694:454073..454095Clytia hemisphaericaexon
TCONS_00061446-exon-scaffold_358-1575043694:453697..453781TCONS_00061446-exon-scaffold_358-1575043694:453697..453781Clytia hemisphaericaexon
TCONS_00061446-exon-scaffold_358-1575043694:453265..453320TCONS_00061446-exon-scaffold_358-1575043694:453265..453320Clytia hemisphaericaexon
TCONS_00061446-exon-scaffold_358-1575043694:452098..453080TCONS_00061446-exon-scaffold_358-1575043694:452098..453080Clytia hemisphaericaexon
TCONS_00061446-exon-scaffold_358-1510915933:454701..454764TCONS_00061446-exon-scaffold_358-1510915933:454701..454764Clytia hemisphaericaexon
TCONS_00061446-exon-scaffold_358-1510915933:454346..454432TCONS_00061446-exon-scaffold_358-1510915933:454346..454432Clytia hemisphaericaexon
TCONS_00061446-exon-scaffold_358-1510915933:454073..454095TCONS_00061446-exon-scaffold_358-1510915933:454073..454095Clytia hemisphaericaexon
TCONS_00061446-exon-scaffold_358-1510915933:453697..453781TCONS_00061446-exon-scaffold_358-1510915933:453697..453781Clytia hemisphaericaexon
TCONS_00061446-exon-scaffold_358-1510915933:453265..453320TCONS_00061446-exon-scaffold_358-1510915933:453265..453320Clytia hemisphaericaexon
TCONS_00061446-exon-scaffold_358-1510915933:452098..453080TCONS_00061446-exon-scaffold_358-1510915933:452098..453080Clytia hemisphaericaexon
TCONS_00061446-exon-scaffold_358-1491911889:454701..454764TCONS_00061446-exon-scaffold_358-1491911889:454701..454764Clytia hemisphaericaexon
TCONS_00061446-exon-scaffold_358-1491911889:454346..454432TCONS_00061446-exon-scaffold_358-1491911889:454346..454432Clytia hemisphaericaexon
TCONS_00061446-exon-scaffold_358-1491911889:454073..454095TCONS_00061446-exon-scaffold_358-1491911889:454073..454095Clytia hemisphaericaexon
TCONS_00061446-exon-scaffold_358-1491911889:453697..453781TCONS_00061446-exon-scaffold_358-1491911889:453697..453781Clytia hemisphaericaexon
TCONS_00061446-exon-scaffold_358-1491911889:453265..453320TCONS_00061446-exon-scaffold_358-1491911889:453265..453320Clytia hemisphaericaexon
TCONS_00061446-exon-scaffold_358-1491911889:452098..453080TCONS_00061446-exon-scaffold_358-1491911889:452098..453080Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_358supercontigscaffold_358:452098..454764 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0667742	0.076904	0.154172	0.377288	0.11733	0.225964	0.133058	0.117806	0.131156	0.888811	0.191047	0.323247	0.0509382	0.113081	0.079568	0	0	0.0717179	0	0.416209	0	0.0791346	0.0729235	0.116236	0.154567	0.105864	0.21229	0.0832594	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061446 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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