TCONS_00061457 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061457
Unique NameTCONS_00061457
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length337

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061457 ID=TCONS_00061457|Name=TCONS_00061457|organism=Clytia hemisphaerica|type=transcript|length=337bp
CGCAGACCTTGTTATATGAAATATGCCTCAACTTATCACCATTCGGTCTT
CATATTGTGCAGGACTTCACATCCATCAAAGCTGAAAGACTGGACATATT
CTGGCAGAACATCAATCTTTTAGCATCTTTCCAACCACGTTTTTATCGAT
GTCACCAAATCAGAATTCACACTGAGATAAATTACAAGAACCAACAGAAC
ATTGTTCAGCATAGTAATAGTAAATTGTTTTcgaattgccttggaaattt
aaTGATGGATTGTTTACATGCTAATAAAAATGTAGGTAAGCTGATGTATC
TTTTACAAGGAGCGTACTTGAAATACTCAGATCGAAC
Run BLAST on NCBI

transcript from alignment at scaffold_358:592478..593824-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061457 ID=TCONS_00061457|Name=TCONS_00061457|organism=Clytia hemisphaerica|type=transcript|length=1347bp|location=Sequence derived from alignment at scaffold_358:592478..593824- (Clytia hemisphaerica)
CGCAGACCTTGTTATATGAAATATGCCTCAACTTATCACCATTCGGTCTT
CATATTGTGCAGGACTTCACATCCATCAAAGGTATAAATTGCTTAAGGCC
ACATTCACGCAAAATGAGAAATAATACTTTAAACGTTTTAGTAAGGTCAT
TGGACCTTTAAAAAATGAAGCAATTCCATTCTGTCCATTGGGCAAATCTG
ACTTAACAATTTAAAAAGTGGGAACTTCTTTCAACTTTTTATTTTTTTCG
CTCGACCCTTTTTTAATGACGTAATCTTTTCTGCAGGCAAAAACGATTAA
CAAAACATTTTGTGCGAAAGTGGAGACCGGCCTTAAATGTTAGATTTTGA
TTTTCTGTCAAACGTCAATATCTACATGTTGATTGAATTTGTGAAAATAC
TGACTTTTTTTGCGCAATGTTTTTGCTTTTAAAGGAAAAAAACACGTGTG
TATACCTTTTAACTGCACAACGAACTTTATATTTATAATACTATCCATAC
TTGATTTCATCAACAAGAAAACTTTTTTCCCTTTCCAGCTGAAAGACTGG
ACATATTCTGGCAGAACATCAATCTTTTAGCATCTTTCCAACCACGTTTT
TATCGATGTCACCAAATCAGAATTCACACTGAGATAAATTACAAGAACCA
ACAGAACATTGTTCAGCATAGTAATAGTAAATTGTTTTCGAATTGCCTTG
GAAATTTAATGATGGATTGTTTACATGCTAATAAAAATGTAGGTGAGTTG
TTTAAATCGTGCTCTGTTCCAGAACCTTCTTTGTTGGGATCCCATACTTT
AATGGGATAAATTTTTAGTGGGGATTAAATTTAGTTGGTTTCGCGGATTT
GGGTGCCATCCGTGAAATTAAATTCCAATGGAAATTTGGAAAGGCCTTAT
CTGCGAAATATTAAAAAACTCCAAAAATTTCAAATAAATACTTTTTAAAT
GTTTACTGGAATCAAAGAAGTGCTAATAATGCCTATTTCAAAAACCAACA
CGCACAATTGGATAGTAAAAGACACATAATCGTGAAAATATTGTCTCCCA
ATAGTACAATCCGCAAAATTTAATCCCAGCAAAAATTTATCCCATTACAG
TAGTTTCCTCCCTATTTCATTGCAAATTATCGGATTGGTTTAGGAAAGAC
GATTTAAAAAAGGGTCTATAATTTTAAGAAAAATGAATGTGACAAATAAT
GGGAAATTTGGAAGTTTTGACAACATTGACTAAGTATATGATGTGTGTAT
TAATTGAAATTTTCTGAAATAATATTTCTCTAATCATTATTTCAGGTAAG
CTGATGTATCTTTTACAAGGAGCGTACTTGAAATACTCAGATCGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038549XLOC_038549Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061457-exon-scaffold_358-1575043694:593744..593824TCONS_00061457-exon-scaffold_358-1575043694:593744..593824Clytia hemisphaericaexon
TCONS_00061457-exon-scaffold_358-1575043694:593083..593286TCONS_00061457-exon-scaffold_358-1575043694:593083..593286Clytia hemisphaericaexon
TCONS_00061457-exon-scaffold_358-1575043694:592478..592529TCONS_00061457-exon-scaffold_358-1575043694:592478..592529Clytia hemisphaericaexon
TCONS_00061457-exon-scaffold_358-1510915933:593744..593824TCONS_00061457-exon-scaffold_358-1510915933:593744..593824Clytia hemisphaericaexon
TCONS_00061457-exon-scaffold_358-1510915933:593083..593286TCONS_00061457-exon-scaffold_358-1510915933:593083..593286Clytia hemisphaericaexon
TCONS_00061457-exon-scaffold_358-1510915933:592478..592529TCONS_00061457-exon-scaffold_358-1510915933:592478..592529Clytia hemisphaericaexon
TCONS_00061457-exon-scaffold_358-1491911889:593744..593824TCONS_00061457-exon-scaffold_358-1491911889:593744..593824Clytia hemisphaericaexon
TCONS_00061457-exon-scaffold_358-1491911889:593083..593286TCONS_00061457-exon-scaffold_358-1491911889:593083..593286Clytia hemisphaericaexon
TCONS_00061457-exon-scaffold_358-1491911889:592478..592529TCONS_00061457-exon-scaffold_358-1491911889:592478..592529Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_358supercontigscaffold_358:592478..593824 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0441507	0.473701	0.787627	1.22622	0	0	0	0	0	0.749494	2.1765	0	0	0.947724	0	0	0.0853481	0.116493	0	2.46889e-08	0	0	1.57109	0.210413	0.317311	0.903322	0.018818
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061457 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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