TCONS_00061464 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061464
Unique NameTCONS_00061464
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061464 ID=TCONS_00061464|Name=TCONS_00061464|organism=Clytia hemisphaerica|type=transcript|length=547bp
TTCGTTCTCAAATGTTTTCACCTGGTTTTGTCGTCATCCTTTATACCATT
TTAATATGTATCTTTCGTctagtaaaataattttgtcattcaCCCCTATT
TTAGGTCGTTGACTACtaaatgacaaaaatttatcCCAACATAGATAAAG
TAAAGTTACATCTTCTAATTTACAGGATTTTGACATTAACATTTGCGTTC
TAGGTAGTATCAATGACGAGTAGCGGAATATAATGACATAAAAAGGAGGG
ATACCGTGAAAGTGCAGAATAGTGTACAAGAACCACTGGATAAACCGATT
ATCGAGATCGTTCTCAGGTAGACATGACCCTTAATTGTCAACTTGACTAA
AACACGGAAGGAAAATCATTTATTCAACATCGAAGCGCTAAGAATTATGC
ACCCGACTGTATCCACGGAGATTTTATATGCAAATATATTTATTATACCC
ctatatcagtgacccggtcagctCCACTTGATGGATAACCCGGTGAAAGA
AATTACATAGAACCCAAATCAAAGATCTTATTTATGGTCTTACCCNN
Run BLAST on NCBI

transcript from alignment at scaffold_358:706019..706623-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061464 ID=TCONS_00061464|Name=TCONS_00061464|organism=Clytia hemisphaerica|type=transcript|length=605bp|location=Sequence derived from alignment at scaffold_358:706019..706623- (Clytia hemisphaerica)
TTCGTTCTCAAATGTTTTCACCTGGTTTTGTCGTCATCCTTTATACCATT
TTAATATGTATCTTTCGTCTAGTAAAATAATTTTGTCATTCACCCCTATT
TTAGGTCGTTGACTACTAAATGACAAAAATTTATCCCAACATAGATAAAG
TAAAGTTACATCTTCTAATTTACAGGATTTTGACATTAACATTTGCGTTC
TAGGTAGTATCAATGACGAGTAGCGGAATATAATGACATAAAAAGGAGGG
ATACCGTGAAAGTGCAGAATAGTGTACAAGTAAGTACTCTCGGGTACCTA
ATGGCNNNNNNNTTTATTCATTCGTTGTCTTTTATAGGAACCACTGGATA
AACCGATTATCGAGATCGTTCTCAGGTAGACATGACCCTTAATTGTCAAC
TTGACTAAAACACGGAAGGAAAATCATTTATTCAACATCGAAGCGCTAAG
AATTATGCACCCGACTGTATCCACGGAGATTTTATATGCAAATATATTTA
TTATACCCCTATATCAGTGACCCGGTCAGCTCCACTTGATGGATAACCCG
GTGAAAGAAATTACATAGAACCCAAATCAAAGATCTTATTTATGGTCTTA
CCCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038552XLOC_038552Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061464-exon-scaffold_358-1575043694:706345..706623TCONS_00061464-exon-scaffold_358-1575043694:706345..706623Clytia hemisphaericaexon
TCONS_00061464-exon-scaffold_358-1575043694:706019..706286TCONS_00061464-exon-scaffold_358-1575043694:706019..706286Clytia hemisphaericaexon
TCONS_00061464-exon-scaffold_358-1510915933:706345..706623TCONS_00061464-exon-scaffold_358-1510915933:706345..706623Clytia hemisphaericaexon
TCONS_00061464-exon-scaffold_358-1510915933:706019..706286TCONS_00061464-exon-scaffold_358-1510915933:706019..706286Clytia hemisphaericaexon
TCONS_00061464-exon-scaffold_358-1491911889:706345..706623TCONS_00061464-exon-scaffold_358-1491911889:706345..706623Clytia hemisphaericaexon
TCONS_00061464-exon-scaffold_358-1491911889:706019..706286TCONS_00061464-exon-scaffold_358-1491911889:706019..706286Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_358supercontigscaffold_358:706019..706623 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.237505	0.607325	1.03413	0.495658	4.24587	3.86112	1.82314	4.99258	0.808712	2.05964	1.7152	0.557863	1.19791	1.14354	0.420681	0.739934	0.940431	0.191238	0.718293	0.993336	3.28614	2.5484	0.924617	0.309727	1.43516	0.85698	1.60842	0.354604	2.27046	2.26292
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061464 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top