TCONS_00061465 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061465
Unique NameTCONS_00061465
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length844

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061465 ID=TCONS_00061465|Name=TCONS_00061465|organism=Clytia hemisphaerica|type=transcript|length=844bp
ctcacaacgaagggaatacacattacaccTCTTTCTCACAACGAAGGAAA
TACGCACCAATTTTTTTAGTTATTACGGATTTTCAATTTAGCAAGAACTA
agtttcgcgaaaagggccaaaattcatgaaaatcacGAATTTACCGTTTT
TAATTACTCCACGGAGTTTAATCCACCTAAGGCGGCGGACACGTaaggta
ttttgatttgatttaagtCCAGAATTTCGCCGGTTTAGGGATTGTAAAGA
TCTTCTAACGCCACATGATGGACATTTAAAGATGTTAGAAAAGGTTTTGA
AACGCTGTTGTGTGCCAACCGTTTCATATTTGATCGGTATTAAATGTGGT
TTTGCCGGttgaagattaaaataatttgaatatcttGCTTTTCTTTCAAG
ATATTCCAAATCGACACGTCGAATAATGGTACAGCTATCAAGTATCCCGG
ATTAAAAAGTCAACGCATCGTCATATTGGACGGCATACAATTAGGAAAAG
GTAGTATCAATGACGAGTAGCGGAATATAATGACATAAAAAGGAGGGATA
CCGTGAAAGTGCAGAATAGTGTACAAGAACCACTGGATAAACCGATTATC
GAGATCGTTCTCAGGTAGACATGACCCTTAATTGTCAACTTGACTAAAAC
ACGGAAGGAAAATCATTTATTCAACATCGAAGCGCTAAGAATTATGCACC
CGACTGTATCCACGGAGATTTTATATGCAAATATATTTATTATACCCcta
tatcagtgacccggtcagctCCACTTGATGGATAACCCGGTGAAAGAAAT
TACATAGAACCCAAATCAAAGATCTTATTTATGGTCTTACCCNN
Run BLAST on NCBI

transcript from alignment at scaffold_358:706019..707127-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061465 ID=TCONS_00061465|Name=TCONS_00061465|organism=Clytia hemisphaerica|type=transcript|length=1109bp|location=Sequence derived from alignment at scaffold_358:706019..707127- (Clytia hemisphaerica)
CTCACAACGAAGGGAATACACATTACACCTCTTTCTCACAACGAAGGAAA
TACGCACCAATTTTTTTAGTTATTACGGATTTTCAATTTAGCAAGAACTA
AGTTTCGCGAAAAGGGCCAAAATTCATGAAAATCACGAATTTACCGTTTT
TAATTACTCCACGGAGTTTAATCCACCTAAGGCGGCGGACACGTAAGGTA
TTTTGATTTGATTTAAGTCCAGAATTTCGCCGGTTTAGGGATTGTAAAGA
TCTTCTAACGCCACATGATGGACATTTAAAGATGTTAGAAAAGGTTTTGA
AACGCTGTTGTGTGCCAACCGTTTCATATTTGATCGGTATTAAATGTGGT
TTTGCCGGTTGAAGATTAAAATAATTTGAATATCTTGCTTTTCTTTCAAG
ATATTCCAAATCGACACGTCGAATAATGGTACAGCTATCAAGTATCCCGG
ATTAAAAAGTCAACGCATCGTCATATTGGACGGCATACAATTAGGAAAAG
GTATTTCGTTCTCAAATGTTTTCACCTGGTTTTGTCGTCATCCTTTATAC
CATTTTAATATGTATCTTTCGTCTAGTAAAATAATTTTGTCATTCACCCC
TATTTTAGGTCGTTGACTACTAAATGACAAAAATTTATCCCAACATAGAT
AAAGTAAAGTTACATCTTCTAATTTACAGGATTTTGACATTAACATTTGC
GTTCTAGGTAGTATCAATGACGAGTAGCGGAATATAATGACATAAAAAGG
AGGGATACCGTGAAAGTGCAGAATAGTGTACAAGTAAGTACTCTCGGGTA
CCTAATGGCNNNNNNNTTTATTCATTCGTTGTCTTTTATAGGAACCACTG
GATAAACCGATTATCGAGATCGTTCTCAGGTAGACATGACCCTTAATTGT
CAACTTGACTAAAACACGGAAGGAAAATCATTTATTCAACATCGAAGCGC
TAAGAATTATGCACCCGACTGTATCCACGGAGATTTTATATGCAAATATA
TTTATTATACCCCTATATCAGTGACCCGGTCAGCTCCACTTGATGGATAA
CCCGGTGAAAGAAATTACATAGAACCCAAATCAAAGATCTTATTTATGGT
CTTACCCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038552XLOC_038552Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061465-exon-scaffold_358-1575043694:706628..707127TCONS_00061465-exon-scaffold_358-1575043694:706628..707127Clytia hemisphaericaexon
TCONS_00061465-exon-scaffold_358-1575043694:706345..706420TCONS_00061465-exon-scaffold_358-1575043694:706345..706420Clytia hemisphaericaexon
TCONS_00061465-exon-scaffold_358-1575043694:706019..706286TCONS_00061465-exon-scaffold_358-1575043694:706019..706286Clytia hemisphaericaexon
TCONS_00061465-exon-scaffold_358-1510915933:706628..707127TCONS_00061465-exon-scaffold_358-1510915933:706628..707127Clytia hemisphaericaexon
TCONS_00061465-exon-scaffold_358-1510915933:706345..706420TCONS_00061465-exon-scaffold_358-1510915933:706345..706420Clytia hemisphaericaexon
TCONS_00061465-exon-scaffold_358-1510915933:706019..706286TCONS_00061465-exon-scaffold_358-1510915933:706019..706286Clytia hemisphaericaexon
TCONS_00061465-exon-scaffold_358-1491911889:706628..707127TCONS_00061465-exon-scaffold_358-1491911889:706628..707127Clytia hemisphaericaexon
TCONS_00061465-exon-scaffold_358-1491911889:706345..706420TCONS_00061465-exon-scaffold_358-1491911889:706345..706420Clytia hemisphaericaexon
TCONS_00061465-exon-scaffold_358-1491911889:706019..706286TCONS_00061465-exon-scaffold_358-1491911889:706019..706286Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_358supercontigscaffold_358:706019..707127 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.780924	0.461408	0.654205	0.547084	3.54458	2.37881	3.5792	3.58239	2.18532	1.62635	0.755688	1.12863	1.18477	1.56358	0.852438	0.646607	0.866715	0.722721	0.740494	0.550148	0.523914	0.778932	0.47903	0.681173	2.60445	2.44142	0.875316	0.373373	0.449017	0.241351
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061465 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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