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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061470 ID=TCONS_00061470|Name=TCONS_00061470|organism=Clytia hemisphaerica|type=transcript|length=1928bpRun BLAST on NCBI protein sequence of TCONS_00061470-protein >TCONS_00061470-protein ID=TCONS_00061470-protein|Name=TCONS_00061470-protein|organism=Clytia hemisphaerica|type=polypeptide|length=579bp MSFTTDDDDHDGAMDITTPLIDKQPQKMSTYGQSTSLSGSFGADESENEIRun BLAST on NCBI transcript from alignment at scaffold_358:815481..832831- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061470 ID=TCONS_00061470|Name=TCONS_00061470|organism=Clytia hemisphaerica|type=transcript|length=17351bp|location=Sequence derived from alignment at scaffold_358:815481..832831- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_358:815481..832831- >TCONS_00061470 ID=TCONS_00061470|Name=TCONS_00061470|organism=Clytia hemisphaerica|type=CDS|length=20880bp|location=Sequence derived from alignment at scaffold_358:815481..832831- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061470 vs. Swiss-Prot (Human)
Match: MCLN2 (Mucolipin-2 OS=Homo sapiens GN=MCOLN2 PE=1 SV=2) HSP 1 Score: 258.455 bits (659), Expect = 8.329e-77 Identity = 179/520 (34.42%), Postives = 278/520 (53.46%), Query Frame = 1
Query: 184 ADESENEIRNKLQWYFKNPYEKYKQKKRKPAXXXXXXXXXXXXXXXAIFFATDEFQLVTFRTDNIETFRQLFLLHYDGHERQE----LFLKDSVYQHMHHTWLQYYQYQSLMIGTY-----HTPIQSIKLCVEESVIAETIKPNGTFPWSK--AHPCYHLKPPKESVEKITWQEFKEDNRLPKHFELISRLRMIFEFQ-VNYTVLHRSNSPDCYQFNITVLYDNSDLDGEMAVTLDSEIDFHQCRITTGLHIREQSWWNYTTXXXXXXXXXXXXXXXXXXRSFRRHYRLCKAAEFFFKDYRHEKFTFTDKLNFINFWLVLIAVSDICIIAGSTIKIVLDWLEYPELYDACSLSFGIAVLFSWVGILRYLGFMQGYNVLLVTLKTSFPSIIRFIICSSLIYIGFTICGWIVLGPYHYKFVNLYVTSECLFALVNGDDMYTTFHSIVQDDSDPLIWYFNKVYLYVFISLFIYVVLSLFIGIVADTYERIKDYGHP--PKTRIELFMEGKEYANAEHQHRHGG 1701
++ E +R L++YF +P EKY+ +++ P KL LQI+KI++VT Q + F +V F+ DN F+ LFL Y G + + ++ ++ Y+ + QY+Q + + +GT +K+C + N T C L S + W K + F + ++ + F + ++ +H PDCY F T+++DN G++ + DS+ +C+ + Q Y +FD VI+IC+ S ILC RS RL K FF + TD+ FIN W VL+ +SD+ I GS +K+ + YD CS+ G + L WVG++RYLG+ Q YNVL++T++ S P ++RF C+ +IY+G+T CGWIVLGPYH KF NL +ECLF+LVNGDDM+ TF I Q L+W F+++YLY FISLFIY++LSLFI ++ D+Y+ IK + P+T ++ F+ KE ++ E +
Sbjct: 34 SEMKEECLREDLKFYFMSPCEKYRARRQIPWKLGLQILKIVMVTTQLVRFGLSNQLVVAFKEDNTVAFKHLFLKGYSGTDEDDYSCSVYTQEDAYESIFFAINQYHQLKDITLGTLGYGENEDNRIGLKVCKQHYKKGTMFPSNETLNIDNDVELDCVQLDLQDLSKKPPDW---KNSSFFRLEFYRLLQVEISFHLKGIDLQTIHSRELPDCYVFQNTIIFDNKAHSGKIKIYFDSDAKIEECK-DLNIFGSTQKNAQYVLVFDAFVIVICLASLILCTRSIVLALRLRKRFLNFFLEKYKRPVCDTDQWEFINGWYVLVIISDLMTIIGSILKMEIKAKNLTN-YDLCSIFLGTSTLLVWVGVIRYLGYFQAYNVLILTMQASLPKVLRFCACAGMIYLGYTFCGWIVLGPYHDKFENLNTVAECLFSLVNGDDMFATFAQIQQ--KSILVWLFSRLYLYSFISLFIYMILSLFIALITDSYDTIKKFQQNGFPETDLQEFL--KECSSKEEYQKESS 544 The following BLAST results are available for this feature:
BLAST of TCONS_00061470 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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