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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061498 ID=TCONS_00061498|Name=TCONS_00061498|organism=Clytia hemisphaerica|type=transcript|length=894bp
CTGATTTTGAAGTAGTTTTACTGTAATAACGCTTATTTCAGTATaactga
aagattttttcacaTCAAAAGTCGACCCAAAAATGAATCACTCTGAAACA
GATAGAAACCAAAACATGCTTGAAAAGCTTAAAGAAGAGCATcggaaaga
aatcaaaattttgggatTGGAGAAAAATATGGAGGTCCTTGAAttgagaa
atgaaaatgaaattctcaAGCATAAGTTGGAAATTTTAGAGTTAAAAACA
AGAAAGGatgaatctgaaaaagttaCTCTAAATGAAAAGAGCAATGTAGC
TGACAACGTCTACTGCACTCGGTTCATTACTGTTAAAGAGCGACTTGCCT
GGGGATTTAAACaatatttccataatggtgacAATCAGTCCAATCTATAT
GAGTCGTATGCAGTATGGTATGAAAGTTTGGcttgtaaaatgaaaaataa
agaagtttATTCTTCTAAAAACCACtttcattttgtcaaaaaacattATG
GAGAATATGAAAAATTTTTGTCTTTGATATCAAAAAGAGTAGGATGCAAC
TATACGGAAAGTTCAAATGAACTCATTGTGAAGGGTTTAGACAAGGAACT
ATGGCAGACTGCAACAATAATTATACTTCATCCCAAGGATATTGCTCAAT
GTATGGAAATGGAAAAGTATGATCAAACCGATCAATATGAGGAATGGTAC
CAAGGAGACGTACCAGAGGAAATGTTCAATGATAACGATAACTctgttat
ttttcttattcttgtaaattcttaattacacgtttttacacgtccaaaat
tttcgaaacctTCGGATTCGGATATTCTACACTTTTTAAGTTctatgttt
ttctattttagtagggggaaatttgttcgttgttttgaggtcgc Run BLAST on NCBI protein sequence of TCONS_00061498-protein >TCONS_00061498-protein ID=TCONS_00061498-protein|Name=TCONS_00061498-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
MNHSETDRNQNMLEKLKEEHRKEIKILGLEKNMEVLELRNENEILKHKLE
ILELKTRKDESEKVTLNEKSNVADNVYCTRFITVKERLAWGFKQYFHNGD
NQSNLYESYAVWYESLACKMKNKEVYSSKNHFHFVKKHYGEYEKFLSLIS
KRVGCNYTESSNELIVKGLDKELWQTATIIILHPKDIAQCMEMEKYDQTD
QYEEWYQGDVPEEMFNDNDNSVIFLILVNS Run BLAST on NCBI transcript from alignment at scaffold_358:324284..325177 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061498 ID=TCONS_00061498|Name=TCONS_00061498|organism=Clytia hemisphaerica|type=transcript|length=894bp|location=Sequence derived from alignment at scaffold_358:324284..325177 (Clytia hemisphaerica)
gcgacctcaaaacaacgaacaaatttccccctactaaaatagaaaaacat
agAACTTAAAAAGTGTAGAATATCCGAATCCGAaggtttcgaaaattttg
gacgtgtaaaaacgtgtaattaagaatttacaagaataagaaaaataaca
gAGTTATCGTTATCATTGAACATTTCCTCTGGTACGTCTCCTTGGTACCA
TTCCTCATATTGATCGGTTTGATCATACTTTTCCATTTCCATACATTGAG
CAATATCCTTGGGATGAAGTATAATTATTGTTGCAGTCTGCCATAGTTCC
TTGTCTAAACCCTTCACAATGAGTTCATTTGAACTTTCCGTATAGTTGCA
TCCTACTCTTTTTGATATCAAAGACAAAAATTTTTCATATTCTCCATaat
gttttttgacaaaatgaaaGTGGTTTTTAGAAGAATaaacttctttattt
ttcattttacaagCCAAACTTTCATACCATACTGCATACGACTCATATAG
ATTGGACTGATTgtcaccattatggaaatattGTTTAAATCCCCAGGCAA
GTCGCTCTTTAACAGTAATGAACCGAGTGCAGTAGACGTTGTCAGCTACA
TTGCTCTTTTCATTTAGAGtaactttttcagattcatCCTTTCTTGTTTT
TAACTCTAAAATTTCCAACTTATGCTtgagaatttcattttcatttctca
aTTCAAGGACCTCCATATTTTTCTCCAatcccaaaattttgatttctttc
cgATGCTCTTCTTTAAGCTTTTCAAGCATGTTTTGGTTTCTATCTGTTTC
AGAGTGATTCATTTTTGGGTCGACTTTTGAtgtgaaaaaatctttcagtt
ATACTGAAATAAGCGTTATTACAGTAAAACTACTTCAAAATCAG Coding sequence (CDS) from alignment at scaffold_358:324284..325177 >TCONS_00061498 ID=TCONS_00061498|Name=TCONS_00061498|organism=Clytia hemisphaerica|type=CDS|length=693bp|location=Sequence derived from alignment at scaffold_358:324284..325177 (Clytia hemisphaerica)
ttaagaatttacaagaataagaaaaataacagAGTTATCGTTATCATTGA
ACATTTCCTCTGGTACGTCTCCTTGGTACCATTCCTCATATTGATCGGTT
TGATCATACTTTTCCATTTCCATACATTGAGCAATATCCTTGGGATGAAG
TATAATTATTGTTGCAGTCTGCCATAGTTCCTTGTCTAAACCCTTCACAA
TGAGTTCATTTGAACTTTCCGTATAGTTGCATCCTACTCTTTTTGATATC
AAAGACAAAAATTTTTCATATTCTCCATaatgttttttgacaaaatgaaa
GTGGTTTTTAGAAGAATaaacttctttatttttcattttacaagCCAAAC
TTTCATACCATACTGCATACGACTCATATAGATTGGACTGATTgtcacca
ttatggaaatattGTTTAAATCCCCAGGCAAGTCGCTCTTTAACAGTAAT
GAACCGAGTGCAGTAGACGTTGTCAGCTACATTGCTCTTTTCATTTAGAG
taactttttcagattcatCCTTTCTTGTTTTTAACTCTAAAATTTCCAAC
TTATGCTtgagaatttcattttcatttctcaaTTCAAGGACCTCCATATT
TTTCTCCAatcccaaaattttgatttctttccgATGCTCTTCTTTAAGCT
TTTCAAGCATGTTTTGGTTTCTATCTGTTTCAGAGTGATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061498-exon-scaffold_358-1491911889:324284..325177 | TCONS_00061498-exon-scaffold_358-1491911889:324284..325177 | Clytia hemisphaerica | exon |
| TCONS_00061498-exon-scaffold_358-1510915933:324284..325177 | TCONS_00061498-exon-scaffold_358-1510915933:324284..325177 | Clytia hemisphaerica | exon |
| TCONS_00061498-exon-scaffold_358-1575043694:324284..325177 | TCONS_00061498-exon-scaffold_358-1575043694:324284..325177 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_358 | supercontig | scaffold_358:324284..325177 . |
Blast
The following BLAST results are available for this feature:
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