TCONS_00061530 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061530
Unique NameTCONS_00061530
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length571

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061530 ID=TCONS_00061530|Name=TCONS_00061530|organism=Clytia hemisphaerica|type=transcript|length=571bp
AAAGAATTGCCATAAAACGACAACCGTTTGAAGTCAGACTGTGAAATTTC
TTACATTATTGATTAtaacaaaatatccaaaaaagcAAATCACATTCAGA
CACGCTGATTCTTACAGACCGTGGTTGTTAAATTCTCTTAAGAACTCTGA
CGAAAAGACAAAGGAAACACCTATTCTCTGATGTCTTCGTCTTCAGAAGA
AGGATGAAAAACAAGATATTTCTCATAGTAGGCCTGGTAATGTTCTACAT
GATGTTATAGATCAACTACTTTGTTGTCGGCGTCTAATTCAACAGTCCCT
AACAAAAAGTTGCTAGAAAGACTCCAACCCTTGCGTTTCCACGTAAGCAT
TAGTACCCCAtccttcatttttatttgtttgagaTCCACCGTTTTCATCT
CCCCCTCTTCGATTTCTTCACACACCTCACAAAATCCCAGCTCCGTTTCC
CAAGCAACAGCAGCGATAtcaccttttttgatttttggaggATAGACGTT
CTTTAGATAGATGCTGTTTTCGTCGGTAGGTTGGTCGGTGGCGAGATGGT
CAGTAGGTTGGTCGGTGGCGA
Run BLAST on NCBI

transcript from alignment at scaffold_359:62369..63101-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061530 ID=TCONS_00061530|Name=TCONS_00061530|organism=Clytia hemisphaerica|type=transcript|length=733bp|location=Sequence derived from alignment at scaffold_359:62369..63101- (Clytia hemisphaerica)
AAAGAATTGCCATAAAACGACAACCGTTTGAAGTCAGACTGTGAAATTTC
TTACATTATTGATTATAACAAAATATCCAAAAAAGCAAATCACATTCAGA
CACGCTGATTCTTACAGACCGTGGTTGTTAAATTCTCTTAAGAACTCTGA
CGAAAAGACAAAGGAAACACCTATTCTCTGATGTCTTCGTCTTCAGAAGA
AGGATGAAAAACAAGATATTTCTCATAGTAGGCCTGGTAATGTTCTACAT
GATGTTATAGATCAACTACTTTGTTGTCGGCGTCTAATTCAACAGTCCCT
AACAAAAAGTTGCTAGAAAGACTCCAACCCTTGCGTTTCCACGTAAGCAT
TAGTACCCCATCCTTCATTTTTATTTGTTTGAGATCCACCGTTTTCATCT
CCCCCTCTTCGATTTCTTCACACACCTCACAAAATCCCAGCTCCGTTTCC
CAAGCAACAGCAGCGATATCACCTTTTTTGATTTTTGGAGGATAGACGTT
CTTTAGATAGATGCTGTTTTCGTCGGTAGGTTGGTCGGTGGCGAGATGGT
CAGTAGGTTGGTCGGTAGGTTGGTCGGTGGCGAGATGGTCGGTAGGTTGG
TCGGTGGCGAGATGGTCGGTAACTTGGTATGTGGCGAGATGGTCGGTAAC
TTGGTCTGTGGCGAGATAGTCGGTGATGAGATCGTCGGTAGGTTGGTCGG
TGGTGAGATCGTCGGTAGGTTGGTCGGTGGCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038603XLOC_038603Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061530-exon-scaffold_359-1575043694:62546..63101TCONS_00061530-exon-scaffold_359-1575043694:62546..63101Clytia hemisphaericaexon
TCONS_00061530-exon-scaffold_359-1575043694:62369..62383TCONS_00061530-exon-scaffold_359-1575043694:62369..62383Clytia hemisphaericaexon
TCONS_00061530-exon-scaffold_359-1510915933:62546..63101TCONS_00061530-exon-scaffold_359-1510915933:62546..63101Clytia hemisphaericaexon
TCONS_00061530-exon-scaffold_359-1510915933:62369..62383TCONS_00061530-exon-scaffold_359-1510915933:62369..62383Clytia hemisphaericaexon
TCONS_00061530-exon-scaffold_359-1491911889:62546..63101TCONS_00061530-exon-scaffold_359-1491911889:62546..63101Clytia hemisphaericaexon
TCONS_00061530-exon-scaffold_359-1491911889:62369..62383TCONS_00061530-exon-scaffold_359-1491911889:62369..62383Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_359supercontigscaffold_359:62369..63101 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.19601	0.0955701	0	0	0.26433	0.104439	0	0.235921	0.825868	0.511485	0.297876	0.391624	0.19554	0	0.556504	0.656935	0.294287	0.452453	0.729269	0	1.13708	1.24791	0.449482	0.408644	0.105223	0.187819	1.07507	0	1.19655	0.554136
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061530 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top