TCONS_00061543 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061543
Unique NameTCONS_00061543
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length287

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061543 ID=TCONS_00061543|Name=TCONS_00061543|organism=Clytia hemisphaerica|type=transcript|length=287bp
TGTAAAACAAGACAGAATCAGAACCATTATTCAGGCACGAAGTTATCTTC
TTATGTTCTATTTTGTAGCGTTACCTGGAAAAGAACTAATCAATTTAACC
TCGCCTTAGATGATttataaattaataaaaaataaacaagacCAACCGTG
ATACGATTCAATAGACAAAATCATTCATTCAAGCACGGACGAATTTAGCT
TTTTCGATGGCACTCGAACTTCATTAATAAACTAAGCAAATCGAATGGTG
TGAAATGGTTTAAGTGCAATTTTGATTTGGGGTCAGA
Run BLAST on NCBI

transcript from alignment at scaffold_359:84776..85062

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061543 ID=TCONS_00061543|Name=TCONS_00061543|organism=Clytia hemisphaerica|type=transcript|length=287bp|location=Sequence derived from alignment at scaffold_359:84776..85062 (Clytia hemisphaerica)
TCTGACCCCAAATCAAAATTGCACTTAAACCATTTCACACCATTCGATTT
GCTTAGTTTATTAATGAAGTTCGAGTGCCATCGAAAAAGCTAAATTCGTC
CGTGCTTGAATGAATGATTTTGTCTATTGAATCGTATCACGGTTGgtctt
gtttattttttattaatttataaATCATCTAAGGCGAGGTTAAATTGATT
AGTTCTTTTCCAGGTAACGCTACAAAATAGAACATAAGAAGATAACTTCG
TGCCTGAATAATGGTTCTGATTCTGTCTTGTTTTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038613XLOC_038613Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061543-exon-scaffold_359-1491911889:84776..85062TCONS_00061543-exon-scaffold_359-1491911889:84776..85062Clytia hemisphaericaexon
TCONS_00061543-exon-scaffold_359-1510915933:84776..85062TCONS_00061543-exon-scaffold_359-1510915933:84776..85062Clytia hemisphaericaexon
TCONS_00061543-exon-scaffold_359-1575043694:84776..85062TCONS_00061543-exon-scaffold_359-1575043694:84776..85062Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_359supercontigscaffold_359:84776..85062 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.57473	0.512189	0.403902	8.81044	1.61814	0	0.688598	0	0	0.251577	0.55654	0	0.937316	0	0.826973	0.0880295	1.0442	0	0	1.53866	0	2.41211	0.471548	0	0	1.02599	0.350272	0.190231	1.41021
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061543 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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