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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061550 ID=TCONS_00061550|Name=TCONS_00061550|organism=Clytia hemisphaerica|type=transcript|length=2316bp
AACTTGCGGCTAGCTAGTTGACCATCAAATCACTTCTCGAGAAAACAAGA
AAATCATGCCTTCTTCTACTGCTCGGTGCATGAGNTTCATTTGTAGTTCT
TGGTTTGGATGGTGAGTTGTTTGATGTCCTCCTTGGTTGTGCCCAGAGGG
TGTTTTACTTTGAGAAAATGGAGATTACAATCAAACAAATGCTGATTCTG
GAACGTGATTTCAATGCACCTTGCAATAATCAGTTAATGACTGGAGGGCA
AATGACTCCTTCGGGGAGAGCACTTGCCTCTCAAAGACACAAATTGAGAT
TGAGAACGATAAGGAAATCGACTGATGCTGTCTGGCCACCCAAGTCGGTA
GATCTTCCGACATTTGAAAGCGACAAGTTATCAAACATCATGAAATTGGA
AGATATTTTGACGGACCTAAAATCAAAAAGCCTCTTCGGGCAAATGGACT
TGGATGACATTAGAACTATGGTCAAGAATAGGATGACCCAGCGACGACGA
GAATCAAGGAAAAGAAGCATTGACTTTACCAAGGTTAGATACTGTTTTCA
TTTTACAGAATTCATACAGTGTCGTTTTTATTTCCCCTGTGTAACTGAtg
tataagtaagtaagtatattcatctggtggctgtcggcggagcggtaagt
gagggagtctatccccttttctatttgcgctagacctgggtgatcgaatg
ctgaggtggagtgcCACACCTACTCTCTGCTCCCAGTTACTTACCCctta
gatcagattacccaatctaagctactcattcgctgagttgccggtgaccg
gggatcgaacccacaacccttggattgtaaggcgaatgcccTAACGACCA
AGCTACTCGGCCTCAAATGTATATTGATGTATATTCTAGTGAAATCACTT
TACAAAGAGCCTCAATACAGTCAGCTATTCTCATTTTTCTTAGGAAAAGG
ATCTTCGAAAAATGGACCAATATCTCCTATAAGAACGAAATCTCCAAAAA
CCAGACCAACATCAGCAAAGAAATCAGAAAagTTCAGCACTCTCACTCGC
CAAGATCACCGAGACCCATCAAAAAGTTATCAGATCTCACAAGCAATGAC
CTGAGAGAAGTGACGAGATTGTTTACAGATAAAACAGAACTGAACAAGCG
TGCAATCTTCAATGAAGTCTCGTCTTTCAAACAACTAAAAATCAAAACAC
AAAATGTTATGACCGTGGAGGCAATGGCTGAAGATGTAGGTCGACAATTA
ATTAAACACAAAATGGTATTGGTGTATAGTGTGCCTGTTAAAGACCTAGA
CGATGTTTTCATTATCGCAAAGTAACTCTTTACGAAGATAGAACCTCTGT
TAAAATTTTGTTTTATTATTGCTTTCATTGTTGGATGGATGGATTTCCCA
TGTTTGTATTTATATTACAACCCACGAAAACCGAAAAcgtttttctatat
tttcactgacagatttttttatcataaattttgTTACCTCTTTTTAATTA
GTATTCTGCTTAATGCAACAAACATAGCAGTGTAAAAACTGAAAGCTAGT
AATTTATTCgctttttgtatttgttttttaatttgatacccCTGTTGGGG
TAGGGTAGGGACTACTAGTAGTAAAAGTATTGCCACGTTAAACACATTTT
CAAATCTTTCTGGATATATTTCAGGATTGACATGAAATTGAAATCACTAG
CTAAAGAACTCTTGAAGTCGCCCAGAATATATACAGATATTTATTATATC
TTTATATCAAGCTTTTGTtaatatttcattgattttaaatAATATCAGAT
AAACAATTTCAGATAtttatctttaaatttttatttgcatACAAAAGATA
TAAATAttgtataaaatattttaatatatataaaaaagttcTTGTTTCCA
AGGAAAAAAGCAATTATCGCCAAAAGATAAAGGTCAAATCCGTTTTTTCA
TGTGCTTCCGATGAGAAACTTGACGTAATTTTGACCATGTTGAGGGGGTG
GGATTTGGCTTTGGAAAAAGGAACATGTACAGGTCTGGGAACAGTACATT
TTTGGGGTGGAAAATGCCTTTTTTCGGGGCTGGGGAAAATGGAACGTGTA
CAGGTCTGGGAACAGGGCATTTTCGGGGTAGCAAATGCCTTTTTTTGGGG
ATGGGATTTGGCTTTGGAAAATGAAGCATTTTCCACCccggatttttttt
aatttcggggCCGAAAATGACCAGCTCCACAACCCGTGATTTTTGTCTAC
TAAAAACACCGACCTGAAAACTAGCAATTTTCGACCccgaaagtttgaaa
atctagcCCTTGGGAA Run BLAST on NCBI transcript from alignment at scaffold_36:14640..17840+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061550 ID=TCONS_00061550|Name=TCONS_00061550|organism=Clytia hemisphaerica|type=transcript|length=3201bp|location=Sequence derived from alignment at scaffold_36:14640..17840+ (Clytia hemisphaerica)
AACTTGCGGCTAGCTAGTTGACCATCAAATCACTTCTCGAGAAAACAAGA
AAATCATGCCTTCTTCTACTGCTCGGTGCATGAGNTTCATTTGTAGTTCT
TGGTTTGGATGGTGAGTTGTTTGATGTCCTCCTTGGTTGTGCCCAGAGGG
TGTTTTACTTTGAGAAAATGGAGATTACAATCAAACAAATGCTGATTCTG
GAACGTGATTTCAATGCACCTTGCAATAATCAGTTAATGACTGGAGGGCA
AATGACTCCTTCGGGGAGAGCACTTGCCTCTCAAAGACACAAATTGAGGT
AAGAATTCGGAATCTAATAAATATTACTTAAGTTCTTTGTGCTTGATAAA
CCCTGTGCAGCCTCTAACAGGTTATCATTAATCTAGCAGGCCTAGTTTGT
GGTTTTGAGAGGGGTAAATCACACCAAGAAATAGTGTGAAGGCTCTTCAA
TTTTTGAGAGGTTTGAGATTGAGGGTCTACAAGtcttattttatattttc
aatttgtttaaaCAGATTGAGAACGATAAGGAAATCGACTGATGCTGTCT
GGCCACCCAAGTCGGTAGATCTTCCGACATTTGAAAGCGACAAGTTATCA
AACATCATGAAATTGGAAGATATTTTGACGGACCTAAAATCAAAAAGCCT
CTTCGGGCAAATGGACTTGGATGACATTAGAACTATGGTCAAGAATAGGA
TGACCCAGCGACGACGAGAATCAAGGAAAAGAAGCATTGACTTTACCAAG
GTTAGATACTGTTTTCATTTTACAGAATTCATACAGTGTCGTTTTTATTT
CCCCTGTGTAACTGAtgtataagtaagtaagtatattcatctggtggctg
tcggcggagcggtaagtgagggagtctatccccttttctatttgcgctag
acctgggtgatcgaatgctgaggtggagtgcCACACCTACTCTCTGCTCC
CAGTTACTTACCCcttagatcagattacccaatctaagctactcattcgc
tgagttgccggtgaccggggatcgaacccacaacccttggattgtaaggc
gaatgcccTAACGACCAAGCTACTCGGCCTCAAATGTATATTGATGTATA
TTCTAGTGAAATCACTTTACAAAGAGCCTCAATACAGTCAGCTATTCTCA
TTTTTCTTAGGAAAAGGATCTTCGAAAAATGGACCAATATCTCCTATAAG
AACGAAATCTCCAAAAACCAGACCAACATCAGCAAAGAAATCAGAAAagg
taaataaattcatttatttgGTAATAGCTTGATCTAAGGGCTGCACTTCT
TAAATTATATAAGCTAAattcttgtcaatttttttatgttgATAGCAAAT
TTTCATGGGTTCAATTTTTAagcattaaaattttttttctgctaATACGG
GGTTCCCCGTGGTCAGTGAAAACCTGGAAAGTCAATGAGTTTTTGTAAAA
TTCCTCAAAAGTCAGGGAAGTTCTTTCCAGAATCCCTTGAAATTGatggt
ttttttaaatttaatcatTCCTATATTTCTTTTAGTTCAGCACTCTCACT
CGCCAAGATCACCGAGACCCATCAAAAAGTTATCAGGTAGGTGCAtgtgt
ttctttttaaaaactcaaattttaagAGTCAAGCCGGCAAAGTTTAAGTT
TGCCTAAATTTCCTACcctgtcaaaaaattttcaagtttaaaaatggGTA
AAATGTATTTTTGTAGTTTTCCAAAAAACTTTTCTGGTATAAATGTTGGT
AATGAATAGGCACTGTGTGTAAAATTTTAGTCTCAANTGCCTAAATTTCC
TACCctgtcaaaatattttcaagtttaaaaatgggtaaaaagtatttttg
tagttttccaaaaaactgTTCTGGTATAAATGTTGGTAATGAATAGGCAC
TGTGTGTAAAATTTTAGTCTCAATCAAGACTTCAATATTGATAAATAACA
TGACTTCATTTCTTTTAGATCTCACAAGCAATGACCTGAGAGAAGTGACG
AGATTGTTTACAGATAAAACAGAACTGAACAAGCGTGCAATCTTCAATGA
AGTCTCGTCTTTCAAACAACTAAAAATCAAAACACAAAATGTTATGACCG
TGGAGGCAATGGCTGAAGATGTAGGTCGACAATTAATTAAACACAAAATG
GTATTGGTGTATAGTGTGCCTGTTAAAGACCTAGACGATGTTTTCATTAT
CGCAAAGTAACTCTTTACGAAGATAGAACCTCTGTTAAAATTTTGTTTTA
TTATTGCTTTCATTGTTGGATGGATGGATTTCCCATGTTTGTATTTATAT
TACAACCCACGAAAACCGAAAAcgtttttctatattttcactgacagatt
tttttatcataaattttgTTACCTCTTTTTAATTAGTATTCTGCTTAATG
CAACAAACATAGCAGTGTAAAAACTGAAAGCTAGTAATTTATTCgctttt
tgtatttgttttttaatttgatacccCTGTTGGGGTAGGGTAGGGACTAC
TAGTAGTAAAAGTATTGCCACGTTAAACACATTTTCAAATCTTTCTGGAT
ATATTTCAGGATTGACATGAAATTGAAATCACTAGCTAAAGAACTCTTGA
AGTCGCCCAGAATATATACAGATATTTATTATATCTTTATATCAAGCTTT
TGTtaatatttcattgattttaaatAATATCAGATAAACAATTTCAGATA
tttatctttaaatttttatttgcatACAAAAGATATAAATAttgtataaa
atattttaatatatataaaaaagttcTTGTTTCCAAGGAAAAAAGCAATT
ATCGCCAAAAGATAAAGGTCAAATCCGTTTTTTCATGTGCTTCCGATGAG
AAACTTGACGTAATTTTGACCATGTTGAGGGGGTGGGATTTGGCTTTGGA
AAAAGGAACATGTACAGGTCTGGGAACAGTACATTTTTGGGGTGGAAAAT
GCCTTTTTTCGGGGCTGGGGAAAATGGAACGTGTACAGGTCTGGGAACAG
GGCATTTTCGGGGTAGCAAATGCCTTTTTTTGGGGATGGGATTTGGCTTT
GGAAAATGAAGCATTTTCCACCccggattttttttaatttcggggCCGAA
AATGACCAGCTCCACAACCCGTGATTTTTGTCTACTAAAAACACCGACCT
GAAAACTAGCAATTTTCGACCccgaaagtttgaaaatctagcCCTTGGGA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061550-exon-scaffold_36-1491911889:14640..14937 | TCONS_00061550-exon-scaffold_36-1491911889:14640..14937 | Clytia hemisphaerica | exon |
| TCONS_00061550-exon-scaffold_36-1510915933:14640..14937 | TCONS_00061550-exon-scaffold_36-1510915933:14640..14937 | Clytia hemisphaerica | exon |
| TCONS_00061550-exon-scaffold_36-1575043694:14640..14937 | TCONS_00061550-exon-scaffold_36-1575043694:14640..14937 | Clytia hemisphaerica | exon |
| TCONS_00061550-exon-scaffold_36-1491911889:15155..15888 | TCONS_00061550-exon-scaffold_36-1491911889:15155..15888 | Clytia hemisphaerica | exon |
| TCONS_00061550-exon-scaffold_36-1510915933:15155..15888 | TCONS_00061550-exon-scaffold_36-1510915933:15155..15888 | Clytia hemisphaerica | exon |
| TCONS_00061550-exon-scaffold_36-1575043694:15155..15888 | TCONS_00061550-exon-scaffold_36-1575043694:15155..15888 | Clytia hemisphaerica | exon |
| TCONS_00061550-exon-scaffold_36-1491911889:16175..16225 | TCONS_00061550-exon-scaffold_36-1491911889:16175..16225 | Clytia hemisphaerica | exon |
| TCONS_00061550-exon-scaffold_36-1510915933:16175..16225 | TCONS_00061550-exon-scaffold_36-1510915933:16175..16225 | Clytia hemisphaerica | exon |
| TCONS_00061550-exon-scaffold_36-1575043694:16175..16225 | TCONS_00061550-exon-scaffold_36-1575043694:16175..16225 | Clytia hemisphaerica | exon |
| TCONS_00061550-exon-scaffold_36-1491911889:16608..17840 | TCONS_00061550-exon-scaffold_36-1491911889:16608..17840 | Clytia hemisphaerica | exon |
| TCONS_00061550-exon-scaffold_36-1510915933:16608..17840 | TCONS_00061550-exon-scaffold_36-1510915933:16608..17840 | Clytia hemisphaerica | exon |
| TCONS_00061550-exon-scaffold_36-1575043694:16608..17840 | TCONS_00061550-exon-scaffold_36-1575043694:16608..17840 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:14640..17840 + |
Blast
The following BLAST results are available for this feature:
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