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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061556 ID=TCONS_00061556|Name=TCONS_00061556|organism=Clytia hemisphaerica|type=transcript|length=2040bpRun BLAST on NCBI protein sequence of TCONS_00061556-protein >TCONS_00061556-protein ID=TCONS_00061556-protein|Name=TCONS_00061556-protein|organism=Clytia hemisphaerica|type=polypeptide|length=577bp KLAFIQAKFEKNSTNLDGKFKKAQTMNKFQDVKIRLLQSDGTSSDAQQTFRun BLAST on NCBI transcript from alignment at scaffold_36:198462..216275+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061556 ID=TCONS_00061556|Name=TCONS_00061556|organism=Clytia hemisphaerica|type=transcript|length=17814bp|location=Sequence derived from alignment at scaffold_36:198462..216275+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_36:198462..216275+ >TCONS_00061556 ID=TCONS_00061556|Name=TCONS_00061556|organism=Clytia hemisphaerica|type=CDS|length=31212bp|location=Sequence derived from alignment at scaffold_36:198462..216275+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061556 vs. Swiss-Prot (Human)
Match: CARM1 (Histone-arginine methyltransferase CARM1 OS=Homo sapiens GN=CARM1 PE=1 SV=3) HSP 1 Score: 528.094 bits (1359), Expect = 2.972e-179 Identity = 261/480 (54.37%), Postives = 345/480 (71.88%), Query Frame = 1
Query: 139 QQTFNLEIKIEGQLSTLKASNESGDVTYTTVLNKNTKGFQFGEQSFVLQLDPNPLVFNFTSKEELDKFCKVFSSTTNQVAGKLNTFDERTEEASSSQYFQFYGYLSQQQNMMQDYIRTSTYQCAILQNAAEFKDKVVLDVGAGTGILSFFAVQAGAKKVYAVEASNMAQHAKELVAHNNLSKVIEVKFGKIEEIELPEKVDIIISEPMGYMLFNERMLETYLHAKKWLKPGGNMYPTKGDLYVAPFTDDALFMEHFGRSNFWCQTSFYNVNLTNIRQNALQEYFRQPIVDTFDVRILMAKPVLHTTDFLTSSEESLQKIYIPIQYTMLMTGTIHGLAFWFEVGFLGKINHVYLSTAPQEPLTHWYQVRCLLPNPLFVRAGQKVSGTVVLHANQRQSYDVEMEVVLDGTGVRSSNVLDLKNPYFRYXXXXXXXXXXXXXXXXTEQYWNTGTAVNGATNLSTS-TSTSYPGQPSHVIAGGLS 1575
QQ LE++ + + + + +++ T+ + G+QSF++ L N ++ F + + F + + + + F ERTEE+S+ QYFQFYGYLSQQQNMMQDY+RT TYQ AILQN +FKDK+VLDVG G+GILSFFA QAGA+K+YAVEAS MAQHA+ LV NNL+ I V GK+EE+ LPE+VDIIISEPMGYMLFNERMLE+YLHAKK+LKP GNM+PT GD+++APFTD+ L+ME F ++NFW Q SF+ V+L+ +R A+ EYFRQP+VDTFD+RILMAK V +T +FL + E L +I IP ++ ML +G +HGLAFWF+V F+G I V+LSTAP EPLTHWYQVRCL +PLF +AG +SGT +L AN+RQSYD+ + +D TG +SSN+LDLKNP+FRY G P+PP G+ SP+E WNTG+ N ++ ++ + T+Y S VIA G S
Sbjct: 53 QQALRLEVRAGPDSAGIALYSHEDVCVFKCSVSRETECSRVGKQSFIITLGCNSVLIQFATPNDFCSFYNILKTCRGHTLER-SVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFFRYTGTTPSPPPGSHYTSPSENMWNTGSTYNLSSGMAVAGMPTAY--DLSSVIASGSS 529 The following BLAST results are available for this feature:
BLAST of TCONS_00061556 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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