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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061558 ID=TCONS_00061558|Name=TCONS_00061558|organism=Clytia hemisphaerica|type=transcript|length=2244bp
TGTGAAATGTCGCTTAGCTGAAACAGAAGAGGAAGGAAAATCATTCGCTC
CAAACATGTCCAATATCCACGTGACTGAAGATTGTCAACTCCAGATCAAT
ACATTTGGTTTACAGAACGGGACATATTCCATAGCTCTTCTCCTTGAAGA
CTACACAGATCCAAATGATTTAAATTCAACTTTGAGTTATGCATCAGTTC
AATTCTTATACACCATTTCAACACCACCGGTCACCGGAAACGCATGCTAC
AAACCGGTCATTCCAACGGCTTTCTTACAAGATGAAAACGAGATCAATTG
TGAAAAACCAGATTTAGTATCTTTATTTGacgcatttttttccaaacctA
CTGCTTTGTTGAATCAAACGATTGTAGCTTTGGCTCTTGAGAGTGACCCA
ATTGTCAGTTTCGAAGGTGTCTTCAAGCAACTGATCTCGATCAACGGTAA
CATTACATCAAGTCCGAATTACGGAAATCTCCCTACGGCCCCGTCCGGCT
ATTTGTATTACATTGCGGAATACATCTGGTTTCCGAATACACAAGTGTCT
TATGGTGAAAGTTCAATGTGCTTTGTTGCAATAGCTCAATCAGGATTATC
ATCAGAGCAAGGGTGTGTTCAAAAACTATTGGAACAAGTCGAAGGAGATA
CTGATCTCACATTTACAAGCATTGACGTCACAAACAACACAAGATATTTC
TACGAGTTCTCGTTCGATGTGAAAGCAACGGTAAGATTTTTTAGAGAAAA
CACCGGATGAATTCACCGTAAAAACTGTAAGCTATTTAAAGATTTGACAT
TTTCTAAGGTCACAGTAACCAGTAACTTTTTCATGAATATTTTATTTAGG
ATAACTGTCTTAATCAGCGGTCAAAGCACCGTTTATTGTTTATGCCGGTA
AATGGACTTTCGATAAACAAATTAGACAgtttctttaaattttgatgcAA
AAAAGCCTCTGTTTATACTTGGCTGAGACGAAAGAACTTTGCAAATTGCT
AAATTTCTGATCAACAGTAATTCGACTTTCACTAGTCAGATCTAGTCAGC
TCAGCTATATTCATGAATAccaataaaaaaatcacttttcaatCGCATCT
TTAAAAATTGCTGTCATCACCACTTCGTTAAAagattcttttgaaatttc
ttcattttcttcctcCATTTCATTGTTTACAATCACATCTTCAATCTCTT
GTGCTGAATCAGCATTCTCATCCTCTGATTGTTTCTCAATAACTATTTCT
ATTGTTTCCGTCCCTGAAGACCACAGTTCGACATTTTGCAAGTTTTCTTG
TTTTAAACTTTCATCGCCTGATAAACTTTCACTGGAATCGAGTTTCTGTA
TATTTATATGTTGTATACTTTCGCTAACTCCAGGAGGCGAGTTTTCAATG
TTTGTAGTATCATTCTGCGTTTGATTCTCTGTTTCCAAGACAACACCTTC
GCTTTTGGATATTGTCGAAGTTTCGCTTTGATTGATGAAAGATTCGCTTT
CATTGGTTAATATTTCGCTTTGATCGATTAATGTGTCGCTTTGGTTGGTG
AAAGATTCGTTTTGATTGGACGGACATTTACAACGGCAAGCATTTTGCAA
TGTTGCGTCTCGTGTTTCTTGTAATAATGTCAACATGCGTCtttgaaatt
ctgaaaaagtataaaaatgttataagaacaaattaaaagaCCCACaagat
ggtgaaaataagaacattttaagaacattctaataGACTTAAAAAGTTAA
ACACATCCACAGGCTTTTGTTTTAAGTTGGATAAAGAGCAATTTCCGTTA
TAAGAATGAGCAGAAACCTAGTGTCCGCTTGTTGGTTATTATTAGAAAGT
CAATTTATgttgaataaattgaaaaaataagctCTAGCTAAAATAGGCAA
AAAAGAATAAGTGCCCACTTTCTGTCCACTTTAATTCAGAATTAGAATAG
ACAGTGTAGGAATCGGCCATCTTAACAGAGCTAAGTTTCAAACGAACCTC
CTTGACTCAGCGGATATTTCAAATCCTCCAATCTCGCACCAGGATTAAAC
GGTTTCGAAGGCGCCGTTGCCGGATCCCCCACCAACAGATATTTCGTGGT
TTTCGCGGCAGAAGACCCTTGACTGGCGCCTTCTGACTGACGAGGTCTTT
TTAACGGCGTTTTTGATATCGAGGACGCTGCGCTTTGGTTGACGTACGTG
AAACCATCAGGTAAATCGAAGTTCTGATAAATGCTTTGTTCTAG Run BLAST on NCBI transcript from alignment at scaffold_36:226731..233972+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061558 ID=TCONS_00061558|Name=TCONS_00061558|organism=Clytia hemisphaerica|type=transcript|length=7242bp|location=Sequence derived from alignment at scaffold_36:226731..233972+ (Clytia hemisphaerica)
TGTGAAATGTCGCTTAGCTGAAACAGAAGAGGAAGGAAAATCATTCGCTC
CAAACATGTCCAATATCCACGTGACTGAAGTAAGAATTTTTTCCAAAGGT
TTCTtatcattagcgagtttatgtattcgagataaatcgagggggacggt
ataaagccaAGTTGTCTCCAAaaactttgctcgacgacggtaaaaacacc
aaaataccgtcgtctgtttaggtgagcaaagacGACATAGAGCCGTACAT
CGACTATCggctttgttttgtatcatttcacttaccATCGCCCTcaatat
cctccgatacataaactcggtactcAAGAAAAAGAGTTGTTATTTCACGT
GGGTAGTCCAGTAAACTAAGACTTATTGACAGTCTGTCAATTGCTTTCAT
GAGGTCCACGGCTAGCCGGATCGACTATCTGTCAACTGAAGGGAACACTT
TTTAAGAGCAGGGGTTCGAACCGAAAACACTGGCACTGGCACCTTGACCG
TTCGGTCATCAAATAGAATGATATATCCCTTCCGTTGGTAGAGAGTGTAG
TTTCAAGTTGTTTTCAACGCCatcaaatttatattttttaccaaACCACA
ACTTTTTGGAAatggatatttcaaaatttgaaaaggtgCTTATTTGAGGA
AATACGGTCTATTtccaatttcatttttattattttgcatTATCTCAGGA
TTGTCAACTCCAGATCAATACATTTGGTTTACAGAACGGGACATATTCCA
TAGCTCTTCTCCTTGAAGACTACACAGATCCAAATGATTTAAATTCAACT
TTGAGTTATGCATCAGTTCAATTCTTATACACCATTTCAACACCACCGGT
CACCGGAAACGCATGCTACAAACCGGTCATTCCAACGGCTTTCTTACAAG
ATGAAAACGAGATCAATTGTGAAAAACCAGATTTAGTATCTTTATTTGac
gcatttttttccaaacctACTGCTTTGTTGAATCAAACGATTGTAGCTTT
GGCTCTTGAGAGTGACCCAATGTAAGTTTACATAGCTTTACGTAGCCACT
TAACTtttagcgaccgtagtgcagtggtagagcatcaggctacggttcgc
aaggttgtgggttcaatccccagccgggtcatgtCAAAGactcccaaaat
ggtacttgctAAAGCCTCTCTGATTGATGCCCagtaattaagagaaggat
caaaggTAAGTGGagtaatccagggagaaagataTTGCGCCCTTCCGCCC
TAGCTTTggatagatagctatcgaaagaggagcctttgggtcgcctccga
ctgcggtccacagacttacttactttattgagctttatataaaccttgga
ggcagtttctcaatcccgatcaaaccaaaatctttgatcggagttttttt
tcaaagtggtACCCGCGTCGAGAGCGCTTGATCTTTTTCGCGTTTGGACA
CAAGTGATGTAGCTCTGTTTGTCGTTAGGCAATtttaacactacaatggc
ttctttgcagGTGCCAATTTCCAAAAAACTCCCATCAATTATAACGGATA
TAGTTTGGTCTAGGGCTTATAAAGGTCAGTCTTATacacgagtgagctac
ttccaaagaaccGTTTTTAGAACTCCCAGAGCCATTGCTAGCCCTATTGT
AAGCGATACATGGGGTTGAACTGGTTACCAAAAATCTCACACTTTCTCGA
ATTAgcgttttaaaaattttttagagggaattcgAATTTCGAATCAGCCA
TTACCTATTTCTGATATCGAGAACTAGTGTCTTGCTCCTTAGAATGTATT
TTCAAGTCTTCCTTTAGTAGTTCGAGTCTTTTCATATCGAACAAAGGATT
TGGTTTTAATGGGCCTTTAGAGCTCCTGATGAAGGTTGTTGAATGTATTA
ATTCCTGACAGATTCTTATATTTTCTAGTGTCAGTTTCGAAGGTGTCTTC
AAGCAACTGATCTCGATCAACGGTAACATTACATCAAGTCCGAATTACGG
AAATCTCCCTACGGCCCCGTCCGGCTATTTGTATTACATTGCGGAATACA
TCTGGTTTCCGAATACACAAGTGTCTTATGGTGAAAGTTCAATGTGCTTT
GTTGCAATAGCTCAATCAGGGTAAGAGAACATCAACCAAACTaaagatac
cttatcggccaaaacttagtcggccctaagtgagtatattttggcttggt
gactaaaattagggccgactaaaaatttgggccgactaaagtTAAGGCcg
aagtttataattaagctttcctattttccagtattttaagctttctccta
tcctattttccatctgcttgtaaatttagaaatatcccaaatttttagtc
ggtcttaattattagtcgggccttagtgactaaattttggcgaggtgact
aaaattagggccgactaataattaaaaggccgactaagttttgaccGATA
AGGTAAGCTTTTATATGGGAAGAACATAAAATTTTGGGGAAGGTTCTACA
ATGATCGAAATATaaagccttattggagcaaatttgagcttttaaatcct
gagatacTAAGGTCcaaaggtcctaagtcttaagtctcatgttaaaactc
tactttctaactgtagtttaacgcgcttaaaaatcatcaCACAAtctcga
aacgacggtatgtgccgcgcaaaatctgtttttcaaaatcgtacccttac
agtgcagttcaatatagCTGAAAAGGtgccctttcagtgcattttctcat
gatttacccaacccttatagtgcactatatttttcagctgtaaatctgcg
tgaaaaaagaagcttgggaaattttctgttttaaagaaaaactgagaaaa
atataagatatataaatataaaatataaagtaaaaacctttctttttatc
aattattttgaatttgttttaaaattcgacccttgcagtgccatctcaca
gaaacacacccttacagtgcattttgggatgctgaaaaacccacCCTAAA
GCGCGGCACCAGAAGTTTTATATAAGGGTACAACAACATAGGTTTGTGaa
ataaattatatttctttacaGATTATCATCAGAGCAAGGGTGTGTTCAAA
AACTATTGGAACAAGTCGAAGGAGGTAAGATGTGAGATTTTCTCGATTGC
TGTTAAATTAATTCTGCAAAGTATGACAAATAAAATCATTCATCAATCTA
AACAGCTTCCAGAAAATTGTACCGAGTGGTTCAAATTTCCACGTacacac
ccttctcacagacccggtaggattatTCAGCCAGTTgggataaaaataat
ggactaaaactcgatggggattgatattcccatgtttttatgACTGggta
tttcaattcttttgttttcaaattcaagaatccagtggggattagaaaaa
tagcatgatattctgcagtgaggattgccttatttgattattttcactgG
GGACAAAATTAGAGCATAATTTTCCACCGgcgacgatattttggccaatt
tttgaGAATGGGTCGCAGtgtgtctgtgagaagggggtgttgtaGAGTTA
TCTATTCGTGCTatcaacttgaaattttgcatgattgaattttaatttta
gaGTGCcctagaaaaaaattatataaaatttttcaatagaaaaattttca
taataaagtctgtccagatataattggcagtggaaacaagaatgcctgta
acttttgatagtcaaatataattatggaatttttttttgcttgttttaga
gaatcaaaagcgctatatttgaatgtatttttggttgaaaaattcgcgaa
ttttagcggtttaatttgcgattgtaaaaattaagctttttttctactta
tgctataacgttcatttttacaccagtggtagttcaaccttaggttaaga
agtttttaaatttcaaggcaaacagaaaagtccttcggaagatatgggac
tcgaaataccccttggtagcacttttctgtgaaatatcaaatctccaact
tattactaaaaacgggggtagtgatatgattgatgaaACAGTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNaatctctttaatgacctcatagccaaactgtgtttagtg
ttttgggaattagcaaagttctttaatgacttaaaaataacaaaggcaat
ataagttcatgattatcctttcaataaaaacaattatactgtatgattta
cttcgtttcgaaataatcaatgatagaccaataataccaatgcaccaaca
cttaacattttccaacttttaattgcactattcaaaaaagataacataac
ccccgtttttagcgcttttgattctctaaaacaagcaaaaaaaaaatcca
taattatatttgacgatcaaaagttacagggatgagctggagtttttaca
agatacttcactaattggtcatttgaagtgatagagatgacgcgttcttt
agaaaaagtaacaaaattgttttattactggttaacgaccaaccaaatca
aaaaagagcttgtaaaaactccagcttgtcccaaagttacaggcattctt
gtttccactgccatttatatctggacagaccttagttatgaatttttatc
ataaaaaggtaaaaatagagttttttgaaacacccggtatcTCAAAGGCA
GAGACAAAATTATATtgttaattttaaacattgtttctatatttcgaaaa
attaataaatgaattctacgaaaaatcattaaaaagttaGTAGAATAAAA
ACAACTAggataaaatgaaataaaaatgtcaacAATGCACCTTCAACCCT
ACCTTTATTAGTCAACATCATTTTACATTGCATTGACACACTGAATTCAT
ATGCCATTACCGCAATGTCTTCGACACACCATAGACctgacagctgattg
gttgtaagtgacgtataatcagtcaatacgtcaattacaaccaatcagct
gttggatccGTGATATAATgtaagaagacattgcaatggtgcatatcatg
aaaaaCGCCAATGTCTGTATTTATGCATCCTTGAGTTTATTTGACGTGAT
TCAGCCCTggtaaattaaaatttaatcGTCTTATAAGGAGCATTCTATTA
CCAGGCTTAATAAGTGTAATAGCTGTATTACCCTTCCAAAGAGTAACTCG
GTCAAAGGgataaccaaataaaaaatgaaatttgaaagcCTGATATTAAA
ATCGTCATAATCTTCTTCAGAATAtgttatttcttaaaaatatttggtGG
TCTTACTATGGACCATGGAAGGAATCTTTGAGCTaagttttactttttat
ctggtTAAAATCCCTTTAAGTTTAAAACCCGTTTATATATCttcttcaaa
atatgttatttcttaaaaatatttggtGGTCTTACTTATAAGGACCATGG
AAGGAATCTTTGAGCTaagttttactttttatctggttatcccGTTCCAT
TTTGACGGTAGCGTTAAAAGATGCATTAAATTACTTCTTCCTTAGATACT
GATCTCACATTTACAAGCATTGACGTCACAAACAACACAAGATATTTCTA
CGAGTTCTCGTTCGATGTGAAAGCAACGGTAAGATTTTTTAGAGAAAACA
CCGGATGAATTCACCGTAAAAACTGTAAGCTATTTAAAGATTTGACATTT
TCTAAGGTCACAGTAACCAGTAACTTTTTCATGAATATTTTATTTAGGAT
AACTGTCTTAATCAGCGGTCAAAGCACCGTTTATTGTTTATGCCGGTAAA
TGGACTTTCGATAAACAAATTAGACAgtttctttaaattttgatgcAAAA
AAGCCTCTGTTTATACTTGGCTGAGACGAAAGAACTTTGCAAATTGCTAA
ATTTCTGATCAACAGTAATTCGACTTTCACTAGTCAGATCTAGTCAGCTC
AGCTATATTCATGAATAccaataaaaaaatcacttttcaatCGCATCTTT
AAAAATTGCTGTCATCACCACTTCGTTAAAagattcttttgaaatttctt
cattttcttcctcCATTTCATTGTTTACAATCACATCTTCAATCTCTTGT
GCTGAATCAGCATTCTCATCCTCTGATTGTTTCTCAATAACTATTTCTAT
TGTTTCCGTCCCTGAAGACCACAGTTCGACATTTTGCAAGTTTTCTTGTT
TTAAACTTTCATCGCCTGATAAACTTTCACTGGAATCGAGTTTCTGTATA
TTTATATGTTGTATACTTTCGCTAACTCCAGGAGGCGAGTTTTCAATGTT
TGTAGTATCATTCTGCGTTTGATTCTCTGTTTCCAAGACAACACCTTCGC
TTTTGGATATTGTCGAAGTTTCGCTTTGATTGATGAAAGATTCGCTTTCA
TTGGTTAATATTTCGCTTTGATCGATTAATGTGTCGCTTTGGTTGGTGAA
AGATTCGTTTTGATTGGACGGACATTTACAACGGCAAGCATTTTGCAATG
TTGCGTCTCGTGTTTCTTGTAATAATGTCAACATGCGTCtttgaaattct
gaaaaagtataaaaatgttataagaacaaattaaaagaCCCACaagatgg
tgaaaataagaacattttaagaacattctaataGACTTAAAAAGTTAAAC
ACATCCACAGGCTTTTGTTTTAAGTTGGATAAAGAGCAATTTCCGTTATA
AGAATGAGCAGAAACCTAGTGTCCGCTTGTTGGTTATTATTAGAAAGTCA
ATTTATgttgaataaattgaaaaaataagctCTAGCTAAAATAGGCAAAA
AAGAATAAGTGCCCACTTTCTGTCCACTTTAATTCAGAATTAGAATAGAC
AGTGTAGGAATCGGCCATCTTAACAGAGCTAAGTTTCAAACGAACCTCCT
TGACTCAGCGGATATTTCAAATCCTCCAATCTCGCACCAGGATTAAACGG
TTTCGAAGGCGCCGTTGCCGGATCCCCCACCAACAGATATTTCGTGGTTT
TCGCGGCAGAAGACCCTTGACTGGCGCCTTCTGACTGACGAGGTCTTTTT
AACGGCGTTTTTGATATCGAGGACGCTGCGCTTTGGTTGACGTACGTGAA
ACCATCAGGTAAATCGAAGTTCTGATAAATGCTTTGTTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061558-exon-scaffold_36-1491911889:226731..226809 | TCONS_00061558-exon-scaffold_36-1491911889:226731..226809 | Clytia hemisphaerica | exon |
| TCONS_00061558-exon-scaffold_36-1510915933:226731..226809 | TCONS_00061558-exon-scaffold_36-1510915933:226731..226809 | Clytia hemisphaerica | exon |
| TCONS_00061558-exon-scaffold_36-1575043694:226731..226809 | TCONS_00061558-exon-scaffold_36-1575043694:226731..226809 | Clytia hemisphaerica | exon |
| TCONS_00061558-exon-scaffold_36-1491911889:227429..227751 | TCONS_00061558-exon-scaffold_36-1491911889:227429..227751 | Clytia hemisphaerica | exon |
| TCONS_00061558-exon-scaffold_36-1510915933:227429..227751 | TCONS_00061558-exon-scaffold_36-1510915933:227429..227751 | Clytia hemisphaerica | exon |
| TCONS_00061558-exon-scaffold_36-1575043694:227429..227751 | TCONS_00061558-exon-scaffold_36-1575043694:227429..227751 | Clytia hemisphaerica | exon |
| TCONS_00061558-exon-scaffold_36-1491911889:228659..228850 | TCONS_00061558-exon-scaffold_36-1491911889:228659..228850 | Clytia hemisphaerica | exon |
| TCONS_00061558-exon-scaffold_36-1510915933:228659..228850 | TCONS_00061558-exon-scaffold_36-1510915933:228659..228850 | Clytia hemisphaerica | exon |
| TCONS_00061558-exon-scaffold_36-1575043694:228659..228850 | TCONS_00061558-exon-scaffold_36-1575043694:228659..228850 | Clytia hemisphaerica | exon |
| TCONS_00061558-exon-scaffold_36-1491911889:229802..229854 | TCONS_00061558-exon-scaffold_36-1491911889:229802..229854 | Clytia hemisphaerica | exon |
| TCONS_00061558-exon-scaffold_36-1510915933:229802..229854 | TCONS_00061558-exon-scaffold_36-1510915933:229802..229854 | Clytia hemisphaerica | exon |
| TCONS_00061558-exon-scaffold_36-1575043694:229802..229854 | TCONS_00061558-exon-scaffold_36-1575043694:229802..229854 | Clytia hemisphaerica | exon |
| TCONS_00061558-exon-scaffold_36-1491911889:232376..233972 | TCONS_00061558-exon-scaffold_36-1491911889:232376..233972 | Clytia hemisphaerica | exon |
| TCONS_00061558-exon-scaffold_36-1510915933:232376..233972 | TCONS_00061558-exon-scaffold_36-1510915933:232376..233972 | Clytia hemisphaerica | exon |
| TCONS_00061558-exon-scaffold_36-1575043694:232376..233972 | TCONS_00061558-exon-scaffold_36-1575043694:232376..233972 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:226731..233972 + |
Blast
The following BLAST results are available for this feature:
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