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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061559 ID=TCONS_00061559|Name=TCONS_00061559|organism=Clytia hemisphaerica|type=transcript|length=863bp
cagctatcgaaagaggagccttcgggtcgcctccgactgcggtcgcagac
ttacttaaagtagttttttttttctaggaCGTACTTAAAAAAATTGGTAA
TGAAAGTTGAACTATGGGAAATCGTCAAACCACAGgtCACGATCAGCGAC
CGCCAACAAACAACCCAACAGTTTCCAGACAAAATGCTCAGTCCCACCAA
CCACGCCCGTATTCGTTACGTTATTCAACTGTAGACCCTACTGCAACACT
TGTAGATGAATATTCAACAGGTGCTCAAAGCGTAAGAAACTCGTTGCATA
TACGAAATGGAGAAAACAGTACTGGGTTGACTTCAAGTGAAAATGATCCT
GATTTGGGAACAGCTGGTGAACATATACAAACACAAGCCACTGCTGAGTC
AGACCAATATCAATCACCAATATCAAGGGAAAATCAAAGTATTAGTCTAA
ATGGTGAAAATCTACAGAGTGACGTTGCTGCAGAGCCAAGTCAATATCGA
TCCAAGTTATCCAGAGATGATAGCAGGACTGGTGTTAATGATCATACTGG
ACACTCAGGATCATTCTCTACTCGATGCCATCCACAGACAGTGACTGACA
GCCCGATTAGACCACGACCACGCCCTTCCAACAGAGTCCATCTTATTCAT
AATTCTACTGTAGTAAGTTCAGCATCGGTTGATATAGGGAACATAGCAAT
TATACCGTATTCACAAGAGCCACGTCGAAGAATTCAGACTAATAAAGCTT
CAATATATCAGGATGATGAAGAATGTGGAACTATTTCACCTCAAAATAGA
ACAGAAAGTTCCTCCTCGAGTCTAGAATGTTTAAACGGAATACAAAGAAG
TCCAACTCAACCA Run BLAST on NCBI protein sequence of TCONS_00061559-protein >TCONS_00061559-protein ID=TCONS_00061559-protein|Name=TCONS_00061559-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
MGNRQTTGHDQRPPTNNPTVSRQNAQSHQPRPYSLRYSTVDPTATLVDEY
STGAQSVRNSLHIRNGENSTGLTSSENDPDLGTAGEHIQTQATAESDQYQ
SPISRENQSISLNGENLQSDVAAEPSQYRSKLSRDDSRTGVNDHTGHSGS
FSTRCHPQTVTDSPIRPRPRPSNRVHLIHNSTVVSSASVDIGNIAIIPYS
QEPRRRIQTNKASIYQDDEECGTISPQNRTESSSSSLECLNGIQRSPTQP Run BLAST on NCBI transcript from alignment at scaffold_36:264003..265303+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061559 ID=TCONS_00061559|Name=TCONS_00061559|organism=Clytia hemisphaerica|type=transcript|length=1301bp|location=Sequence derived from alignment at scaffold_36:264003..265303+ (Clytia hemisphaerica)
cagctatcgaaagaggagccttcgggtcgcctccgactgcggtcgcagac
ttacttaaagtagttttttttttctaggaCGTACTTAAAAAAATTGGTAA
TGAAAGTTGAACTATGGGAAATCGTCAAACCACAGGTGAGTAATACGAAT
AGCCATTATATCTGATCCAAAAAGTAAAACTTGTACAATAATAAAGTGTC
GACAATAATGATCTGGTGAAGCCAATTCTAAGTTACAGTTTAAATAAAGT
CTATTTATATTCGCAATTTTTAAGGACATCATTTAACATaagcgtagcga
gataccccttcaaaatttatgaataagagcggtttttacgacactgtaaa
ttattgtctttgttttatcaaaagataatgaatatgtaaTAAACATCTGC
ACTCCCttataaattttgcagggtatctcgcttcgCCAATGAAATTTAAC
GTACCTCCTACCATTTGATTACCTCCCTTCCGCGAGcacaaatgttgaaa
aattcatATCATAAAAAAGACTCAAAACTGTTCAAAactgtttttaaatg
aaatttaaatttttaaatttcaggtCACGATCAGCGACCGCCAACAAACA
ACCCAACAGTTTCCAGACAAAATGCTCAGTCCCACCAACCACGCCCGTAT
TCGTTACGTTATTCAACTGTAGACCCTACTGCAACACTTGTAGATGAATA
TTCAACAGGTGCTCAAAGCGTAAGAAACTCGTTGCATATACGAAATGGAG
AAAACAGTACTGGGTTGACTTCAAGTGAAAATGATCCTGATTTGGGAACA
GCTGGTGAACATATACAAACACAAGCCACTGCTGAGTCAGACCAATATCA
ATCACCAATATCAAGGGAAAATCAAAGTATTAGTCTAAATGGTGAAAATC
TACAGAGTGACGTTGCTGCAGAGCCAAGTCAATATCGATCCAAGTTATCC
AGAGATGATAGCAGGACTGGTGTTAATGATCATACTGGACACTCAGGATC
ATTCTCTACTCGATGCCATCCACAGACAGTGACTGACAGCCCGATTAGAC
CACGACCACGCCCTTCCAACAGAGTCCATCTTATTCATAATTCTACTGTA
GTAAGTTCAGCATCGGTTGATATAGGGAACATAGCAATTATACCGTATTC
ACAAGAGCCACGTCGAAGAATTCAGACTAATAAAGCTTCAATATATCAGG
ATGATGAAGAATGTGGAACTATTTCACCTCAAAATAGAACAGAAAGTTCC
TCCTCGAGTCTAGAATGTTTAAACGGAATACAAAGAAGTCCAACTCAACC
A Coding sequence (CDS) from alignment at scaffold_36:264003..265303+ >TCONS_00061559 ID=TCONS_00061559|Name=TCONS_00061559|organism=Clytia hemisphaerica|type=CDS|length=1500bp|location=Sequence derived from alignment at scaffold_36:264003..265303+ (Clytia hemisphaerica)
ATGGGAAATCGTCAAACCACAGgtCACGATCAGCGACCGCCAACAAACAA
CCCAACAGTTTCCAGACAAAATGCTCAGTCCCACCAACCACGCCCGTATT
CGTTACGTTATTCAACTGTAGACCCTACTGCAACACTTGTAGATGAATAT
TCAACAGGTGCTCAAAGCGTAAGAAACTCGTTGCATATACGAAATGGAGA
AAACAGTACTGGGTTGACTTCAAGTGAAAATGATCCTGATTTGGGAACAG
CTGGTGAACATATACAAACACAAGCCACTGCTGAGTCAGACCAATATCAA
TCACCAATATCAAGGGAAAATCAAAGTATTAGTCTAAATGGTGAAAATCT
ACAGAGTGACGTTGCTGCAGAGCCAAGTCAATATCGATCCAAGTTATCCA
GAGATGATAGCAGGACTGGTGTTAATGATCATACTGGACACTCAGGATCA
TTCTCTACTCGATGCCATCCACAGACAGTGACTGACAGCCCGATTAGACC
ACGACCACGCCCTTCCAACAGAGTCCATCTTATTCATAATTCTACTGTAG
TAAGTTCAGCATCGGTTGATATAGGGAACATAGCAATTATACCGTATTCA
CAAGAGCCACGTCGAAGAATTCAGACTAATAAAGCTTCAATATATCAGGA
TGATGAAGAATGTGGAACTATTTCACCTCAAAATAGAACAGAAAGTTCCT
CCTCGAGTCTAGAATGTTTAAACGGAATACAAAGAAGTCCAACTCAACCA
ATGGGAAATCGTCAAACCACAGgtCACGATCAGCGACCGCCAACAAACAA
CCCAACAGTTTCCAGACAAAATGCTCAGTCCCACCAACCACGCCCGTATT
CGTTACGTTATTCAACTGTAGACCCTACTGCAACACTTGTAGATGAATAT
TCAACAGGTGCTCAAAGCGTAAGAAACTCGTTGCATATACGAAATGGAGA
AAACAGTACTGGGTTGACTTCAAGTGAAAATGATCCTGATTTGGGAACAG
CTGGTGAACATATACAAACACAAGCCACTGCTGAGTCAGACCAATATCAA
TCACCAATATCAAGGGAAAATCAAAGTATTAGTCTAAATGGTGAAAATCT
ACAGAGTGACGTTGCTGCAGAGCCAAGTCAATATCGATCCAAGTTATCCA
GAGATGATAGCAGGACTGGTGTTAATGATCATACTGGACACTCAGGATCA
TTCTCTACTCGATGCCATCCACAGACAGTGACTGACAGCCCGATTAGACC
ACGACCACGCCCTTCCAACAGAGTCCATCTTATTCATAATTCTACTGTAG
TAAGTTCAGCATCGGTTGATATAGGGAACATAGCAATTATACCGTATTCA
CAAGAGCCACGTCGAAGAATTCAGACTAATAAAGCTTCAATATATCAGGA
TGATGAAGAATGTGGAACTATTTCACCTCAAAATAGAACAGAAAGTTCCT
CCTCGAGTCTAGAATGTTTAAACGGAATACAAAGAAGTCCAACTCAACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061559-exon-scaffold_36-1491911889:264003..264137 | TCONS_00061559-exon-scaffold_36-1491911889:264003..264137 | Clytia hemisphaerica | exon |
| TCONS_00061559-exon-scaffold_36-1510915933:264003..264137 | TCONS_00061559-exon-scaffold_36-1510915933:264003..264137 | Clytia hemisphaerica | exon |
| TCONS_00061559-exon-scaffold_36-1575043694:264003..264137 | TCONS_00061559-exon-scaffold_36-1575043694:264003..264137 | Clytia hemisphaerica | exon |
| TCONS_00061559-exon-scaffold_36-1491911889:264576..265303 | TCONS_00061559-exon-scaffold_36-1491911889:264576..265303 | Clytia hemisphaerica | exon |
| TCONS_00061559-exon-scaffold_36-1510915933:264576..265303 | TCONS_00061559-exon-scaffold_36-1510915933:264576..265303 | Clytia hemisphaerica | exon |
| TCONS_00061559-exon-scaffold_36-1575043694:264576..265303 | TCONS_00061559-exon-scaffold_36-1575043694:264576..265303 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:264003..265303 + |
Blast
The following BLAST results are available for this feature:
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