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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061562 ID=TCONS_00061562|Name=TCONS_00061562|organism=Clytia hemisphaerica|type=transcript|length=663bp
GTTGACGAGAGATAAAAATTGCTTCGAGAAGTTTCCTCAAAAGTGATGTA
CAGACTACTGACCTTTATGCCTAATTCTGAATGGAGCTAAAATGGAAATA
TTTTGGGTAAAATTCGATTTCACGAAAATAGCCGAAAATTAGCCACGCCT
TTCATTCATTTGTTGACGCATGTGCCATACCAAAGGGATGTTACACCGAA
ACGAACCTTTAAGAAGAGGAACCGCTTACAAAAATCCATACAAAAGtttt
tcaggTCGAAGTGTAAGCCGATACAAAACTTGATTACTCAACAATACGAA
TAAATCAGAAAGTGTGACGACGGATCTAAAAGCATACCAGGGAGGAAGAG
TCgcacccaatgaagtataagcccgaagagctagaataaaataaaattgg
tctaatttcaaaattatgatGTAATCAAGCCAAATCGACCAATCAGCGTT
CTGAACAACGATTTGATCAGTTGACTAACTCAGTTTTAAAGTTGACTCTC
TTTTATtcaacgttctactattcgatacgctccattatttgataatattg
aaagccaccGTCATCAAGTAACTCATAAACgatgttctactattcgatac
tcccttattcgataatattgaaagtcactgtcaacaagaaactctcataa
acgacgttctact Run BLAST on NCBI transcript from alignment at scaffold_36:332662..335350+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061562 ID=TCONS_00061562|Name=TCONS_00061562|organism=Clytia hemisphaerica|type=transcript|length=2689bp|location=Sequence derived from alignment at scaffold_36:332662..335350+ (Clytia hemisphaerica)
GTTGACGAGAGATAAAAATTGCTTCGAGAAGTTTCCTCAAAAGTGATGTA
CAGACTACTGACCTTTATGCCTAGTAAGTGAGTGCCCTCTGTCTTTCATT
TCAaagttttccttgtttttcaaatctttatattttaatcaattaaaata
CTCATGACTGGGGCGTAAAGATACCTCCGTTACCCCCTTAGAGGGACCTG
TTTATAGTTGTTGTTGTATATATATTTGGAAATCTATATAAGCTTATTGT
GAAATGAGAAAAGCTGGATAGTACGATCTAAGATTATACAAGTCCCGGTG
AGAGCCACGTCCCGCTTGAAAATTTAGCCAGAATCTTGTTTGAGAAATTA
ACTTTGGCCTGAAAACGCTCTCCATTATGGGAAGAAGTTCAACCGTGGCT
GCGAGACAGTGGTGTCCGGTAAGTTGCGTCTAACCTGATCCAAAGTcagt
agttttttctttttactatATACAACTTTATATTATTTACAGATTCTGAA
TGGAGCTAAAATGGAAATATTTTGGGTAAAATTCGATTTCACGAAAATAG
CCGAAAATTAGCCACGCCTTTCATTCATTTGTTGACGCATGTGCCATACC
AAAGGGATGTTACACCGAAACGAACCTTTAAGAAGAGGAACCGCTTACAA
AAATCCATACAAAAGGTTTGAAAAgattattacacccctgtctcacaacc
ccggtgaaactttttcccacatgGGGACGAAATCAAATTCAATTCCCCAG
CGggatgaaattgtagggtattttatTACCACCGGGGACGAGATTTTGGC
CGAATTTTCCAGTTGGGTTNGTCAATTCCCCAGCGGggatgaaattgtag
ggtattttatCACCACCGGGGACGAGAAATTGGccgaattttccagtggg
gttggggtccaagtgggtctgtgacacaggggtgtatcaaTTCATGAGCT
CCCTATCAGTAGGAAGTTTTCAGCATTTTGATGAATGTATGTGACAAGTT
GTTCAAACCCTCTCAATGTTTTATCGACATTCCATttactttgttttttt
atcagaattaaTTTGATATTTAGAGGTTTTATGATAAGAATCCCAGTCAC
TTGcactacttttttattttactgctaGACATGTGAACGCGCTATCGCTG
TTGTGAAAATGCGAACTAAGGGGACTCGTTAAAAGTTTTGTAATACCTTC
AAAAAAATCAGTGTCGTTATGTAGGCTTATTCAGCCTTCAACTTCAGAAC
TTTCTATCTTTTTGTAAATTCGATTAAAGAATCTGACTCGATGCTTAATC
TTCGTCAAGGGTTTTATTATTTGGAGTGAGAAATCTTACCCCCTCAGGGT
TTGAAGCCATAAAAAGCCTCCAAAGTGTTTTTAGAAAAGGTTTctcaata
aaattcaaattctgAGTAACTTCTCAGTCCTGACACCAGCACCATCGATT
TGTCAAACTATAATTTCAAATTACGGTTTGGCTAAAATCAAAGGTGTGAA
GAGTTTGTCGCCCTTCAGGTATTAGGCAAAAACCAGACTAAAGGCTAAAA
TTGCCCACTCGAGGAGGTTTTCCNGTTAGGGAAAATCCAGACTAAAGGCT
AAAATTGCCCACTCGAGGAGGTTTTCCTCCTCGGTGGTTCATTTGACAAT
TCCCTTGGGAGTTAAAGAGAACAATAGAGTAATTGCTATAACAATAGAAT
ATAATTGGCACGTGTTCTcgcttacacgcttttttttataagaatacact
ttataagaatgtccatgatgaaaatggccaaaaaactaagaatatgctaa
gaatatcaccatcatggaattttgctactaaagctaagaatcccatttta
agagcattttaaattataaattatcaattatccccaagttaggctcactc
cttttacaaaagtgccattttatgcttgagacgtatgtactaaatgttaa
accTAGTATAAATTAGGATCCACacctaagaatgtgctgtaagcatattt
taggatgattttcccaaaaaagttaagaatattcatgatgaaatagattt
acaccattcttataaaaaaaaagcgtgtatttacaAATGTTCTCGTttca
actttttataagaaatttcccCTTCCCTCAATTTTGCGCTTGTGCTTATG
AAAatcattctgaaaattttaaaaatgattttaattcgAAACACTTTAAA
ATACAAATGAGCTAATACTCAAATCATCTTCCAACTGTAATCAATATTAT
TCCTCTAAgattatttttttagtttttcaggTCGAAGTGTAAGCCGATAC
AAAACTTGATTACTCAACAATACGAATAAATCAGAAAGTGTGACGACGGA
TCTAAAAGCATACCAGGGAGGAAGAGTCgcacccaatgaagtataagccc
gaagagctagaataaaataaaattggtctaatttcaaaattatgatGTAA
TCAAGCCAAATCGACCAATCAGCGTTCTGAACAACGATTTGATCAGTTGA
CTAACTCAGTTTTAAAGTTGACTCTCTTTTATtcaacgttctactattcg
atacgctccattatttgataatattgaaagccaccGTCATCAAGTAACTC
ATAAACgatgttctactattcgatactcccttattcgataatattgaaag
tcactgtcaacaagaaactctcataaacgacgttctact
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061562-exon-scaffold_36-1491911889:332662..332734 | TCONS_00061562-exon-scaffold_36-1491911889:332662..332734 | Clytia hemisphaerica | exon |
| TCONS_00061562-exon-scaffold_36-1510915933:332662..332734 | TCONS_00061562-exon-scaffold_36-1510915933:332662..332734 | Clytia hemisphaerica | exon |
| TCONS_00061562-exon-scaffold_36-1575043694:332662..332734 | TCONS_00061562-exon-scaffold_36-1575043694:332662..332734 | Clytia hemisphaerica | exon |
| TCONS_00061562-exon-scaffold_36-1491911889:333154..333326 | TCONS_00061562-exon-scaffold_36-1491911889:333154..333326 | Clytia hemisphaerica | exon |
| TCONS_00061562-exon-scaffold_36-1510915933:333154..333326 | TCONS_00061562-exon-scaffold_36-1510915933:333154..333326 | Clytia hemisphaerica | exon |
| TCONS_00061562-exon-scaffold_36-1575043694:333154..333326 | TCONS_00061562-exon-scaffold_36-1575043694:333154..333326 | Clytia hemisphaerica | exon |
| TCONS_00061562-exon-scaffold_36-1491911889:334934..335350 | TCONS_00061562-exon-scaffold_36-1491911889:334934..335350 | Clytia hemisphaerica | exon |
| TCONS_00061562-exon-scaffold_36-1510915933:334934..335350 | TCONS_00061562-exon-scaffold_36-1510915933:334934..335350 | Clytia hemisphaerica | exon |
| TCONS_00061562-exon-scaffold_36-1575043694:334934..335350 | TCONS_00061562-exon-scaffold_36-1575043694:334934..335350 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:332662..335350 + |
Blast
The following BLAST results are available for this feature:
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