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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061590 ID=TCONS_00061590|Name=TCONS_00061590|organism=Clytia hemisphaerica|type=transcript|length=988bp
aaaaatgtgaaattaaaagaataagattttttaaaagtgaCTCTGTGCTC
ATCGAGCAGATCAATAAACCGATATCAATCAATAAAATTGTGATTATGGT
CATTTATTTATTGGCTTTTACTCTTTTCAGCTTGACCTTTGATGAGGTCA
AGACTCATTTCAATTGTGAGTTTGATAAATGTTCATCAGCAGAATATTGT
TGTGCTCAAGATGTGTGTTGTGCTAAGCGTTACCCTGTTTGGGATCTCTG
GTATTTCTGGTTCACTTTCTTCCTAATCTTCATCTTCTTCGTATGCTGTT
GTTATTACGTCAAAAAAAGACGCAGCCGTcgttcaaatgacgtcattgtt
tatTCTGCTAGATCAAATACAGTGAGCAGTGTGCCATATGGTCATGAAGT
GTTGTACACTCCATCACAGAATACACATTACTACATGGCCCCTGTCATGG
CTTCACCCAATACACCTTTCATTGggCAAGGATACCCACAAGCGTATATT
TATCCGCCGCAATCCACCAGTGGTTACAAACCAGCAGTTGTTAGCAGTGC
TCCTTATTTAGATGAAAAATCATAACAGTCgataatttgaatttgaaatt
tatcgAATATCGACTCAAAAGTAAGCAGACAAATGCAATGATCTTTTTTA
GTATACCATATGAGATGAATTATTGAAAATCCAAGTTCTTTGCATTAACT
TACAAAAGACTCTCGAGGAAACTGGATTTGAGTTGAATTGGTTCTGCGAC
GAAGGACATATACTGCTCTGTTATAAAGTgtaaatttttataattaatta
tcaaaaaataagaaaagactCGCCAACAGTAGAATATATTCAATGTCCTC
TTAGAGGGGCCGATCTTTCTCCGGAGGGGAGGGAAGTaaacccggggggg
tactacccttgtcgaccgacgggggtgctccgctgaggttcgaaaaatgg
accctacgtgggactcgaaatttgcgaaaaaagtgacc Run BLAST on NCBI protein sequence of TCONS_00061590-protein >TCONS_00061590-protein ID=TCONS_00061590-protein|Name=TCONS_00061590-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
KCEIKRIRFFKSDSVLIEQINKPISINKIVIMVIYLLAFTLFSLTFDEVK
THFNCEFDKCSSAEYCCAQDVCCAKRYPVWDLWYFWFTFFLIFIFFVCCC
YYVKKRRSRRSNDVIVYSARSNTVSSVPYGHEVLYTPSQNTHYYMAPVMA
SPNTPFIGQGYPQAYIYPPQSTSGYKPAVVSSAPYLDEKS Run BLAST on NCBI transcript from alignment at scaffold_36:869653..872065+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061590 ID=TCONS_00061590|Name=TCONS_00061590|organism=Clytia hemisphaerica|type=transcript|length=2413bp|location=Sequence derived from alignment at scaffold_36:869653..872065+ (Clytia hemisphaerica)
aaaaatgtgaaattaaaagaataagattttttaaaagtgaCTCTGTGCTC
ATCGAGCAGATCAATAAACCGATATCAATCAATAAAATTGTGATTATGGT
CATTTATTTATTGGCTTTTACTCTTTTCAGCTTGACCTTTGATGAGGTAT
GTATTGGGCCATATCGAGCAAATCAATCTATTTGATACACAAATCTAACA
GATAGCAAACTCCGAAATCTTTCGTTGAAGAAACCTTGCACGCACAATTG
TAAGCCCAAAAAGGGATCCTTTTTAGAGGGGATGAATTTATGACTTTTTC
AGCGATGACAAAATTTTGACAGCAGGTCTCATAACATTCATTTCATATAG
TAGCTGCACTTTGAAAATTACGCAAAGAAACAGTAAATCtatcaaaatat
ttcataaaaaattttgttcaaGAAAAAGCGTACAACCGTACAACCCCCCT
CTACCCCTAAACTTTTAGTAAGTAGGTTATATGATTGCTAACTAAGGGGT
TGGTGAGTTTAGAAGGCAGAGTTGAAGGCAAATGGTGATGTTTTGACACA
GAATTTTTCAGTTCAAACTCAAACTCTCTAGATTACAACATCTTCTTTCT
TCGACAGGTCAAGACTCATTTCAATTGTGAGTTTGATAAATGTTCATCAG
CNGTAAGCCCAAAAAGGGAACCTTTTTAGAGGGGATGAATTTATGACTTT
TTCAGCGATGACAAAATTTTGACAGCAGGTCTCATAACATTCATTTCATA
TAGTAGCTGCACTTTGAAAATTACGCAAAGAAACAGTAAATCtatcaaaa
tatttcataaaaaattttgttcaaGAAAAAGCGTACAACCGTACAACCCC
CCTCTACCCCTAAACTTTTAGTAAGTAGGTTATATGATTGCTAACTAAGG
GGTTGGTGAGTTTAGAAGGCAGAGTTGAAGGCAAATGGTGATGTTTTGAC
ACAGAATTTTTCAGTTCAAACTCAAACTCTCTAGATTACAACATCTTCTT
TCTTCGACAGGTCAAGACTCATTTCAATTGTGAGTTTGATAAATGTTCAT
CAGCAGAATATTGTTGTGCTCAAGATGTGTGTTGTGCTAAGCGTTACCCT
GTTTGGGATCTCTGGTATTTCTGGTAAGCCAATACAACGTACCAGATTCT
TCGGAGAATTTTCCAATTGATTTTCTTATATTAATTTGAATTTCAGTTGT
TCTGAATTTGTTCTAATAATGCTTTAACACTGCTTTGGCTAAAATTGAGg
ctcttgttcttataaatttattctAAGCATAAAAACAAGCTGATATGTTC
TATGGGTTTACACATGcgatgttttatttttgttcaatCTTGTTTTAGGT
TCACTTTCTTCCTAATCTTCATCTTCTTCGTATGCTGTTGTTATTACGTC
AAAAAAAGACGCAGCCGTcgttcaaatgacgtcattgtttatTCTGCTAG
ATCAAATACAGTGAGCAGTGTGCCATATGGTCATGAAGTGTTGTACACTC
CATCACAGAATACACATTACTACATGGCCCCTGTCATGGCTTCACCCAAT
ACACCTTTCATTGGTAAGAAATCGCTCTACTTCAGTGACTCGGTCACCCT
TGATCCCAGGGCGAACATTGACgacgtttttgttttgatgttatttGATG
AGTCCTGGTCACGGGTATCGGCAAAGATTGCCTAATCTCGAAATGTTAAT
GCTAATTATGACGTGGTTCACAGCGTGATTAATTGGGCGGTGGATTAATA
TCCACCGAAGTTCATTGATAATATTGACTAGTTTTTTAATCTTTccaatt
ctttcaaaatcaCTCAGAAAGCTTTCACAGCGGTCAGAGAATTTCACCAT
TGGTTTTGTCTGAAAGAATGATGTGTGattttactaattttcattttagg
gCAAGGATACCCACAAGCGTATATTTATCCGCCGCAATCCACCAGTGGTT
ACAAACCAGCAGTTGTTAGCAGTGCTCCTTATTTAGATGAAAAATCATAA
CAGTCgataatttgaatttgaaatttatcgAATATCGACTCAAAAGTAAG
CAGACAAATGCAATGATCTTTTTTAGTATACCATATGAGATGAATTATTG
AAAATCCAAGTTCTTTGCATTAACTTACAAAAGACTCTCGAGGAAACTGG
ATTTGAGTTGAATTGGTTCTGCGACGAAGGACATATACTGCTCTGTTATA
AAGTgtaaatttttataattaattatcaaaaaataagaaaagactCGCCA
ACAGTAGAATATATTCAATGTCCTCTTAGAGGGGCCGATCTTTCTCCGGA
GGGGAGGGAAGTaaacccgggggggtactacccttgtcgaccgacggggg
tgctccgctgaggttcgaaaaatggaccctacgtgggactcgaaatttgc
gaaaaaagtgacc Coding sequence (CDS) from alignment at scaffold_36:869653..872065+ >TCONS_00061590 ID=TCONS_00061590|Name=TCONS_00061590|organism=Clytia hemisphaerica|type=CDS|length=2292bp|location=Sequence derived from alignment at scaffold_36:869653..872065+ (Clytia hemisphaerica)
aaatgtgaaattaaaagaataagattttttaaaagtgaCTCTGTGCTCAT
CGAGCAGATCAATAAACCGATATCAATCAATAAAATTGTGATTATGGTCA
TTTATTTATTGGCTTTTACTCTTTTCAGCTTGACCTTTGATGAGGTCAAG
ACTCATTTCAATTGTGAGTTTGATAAATGTTCATCAGCAGAATATTGTTG
TGCTCAAGATGTGTGTTGTGCTAAGCGTTACCCTGTTTGGGATCTCTGGT
ATTTCTGGTTCACTTTCTTCCTAATCTTCATCTTCTTCGTATGCTGTTGT
TATTACGTCAAAAAAAGACGCAGCCGTcgttcaaatgacgtcattgttta
tTCTGCTAGATCAAATACAGTGAGCAGTGTGCCATATGGTCATGAAGTGT
TGTACACTCCATCACAGAATACACATTACTACATGGCCCCTGTCATGGCT
TCACCCAATACACCTTTCATTGggCAAGGATACCCACAAGCGTATATTTA
TCCGCCGCAATCCACCAGTGGTTACAAACCAGCAGTTGTTAGCAGTGCTC
CTTATTTAGATGAAAAATCATAAaaatgtgaaattaaaagaataagattt
tttaaaagtgaCTCTGTGCTCATCGAGCAGATCAATAAACCGATATCAAT
CAATAAAATTGTGATTATGGTCATTTATTTATTGGCTTTTACTCTTTTCA
GCTTGACCTTTGATGAGGTCAAGACTCATTTCAATTGTGAGTTTGATAAA
TGTTCATCAGCAGAATATTGTTGTGCTCAAGATGTGTGTTGTGCTAAGCG
TTACCCTGTTTGGGATCTCTGGTATTTCTGGTTCACTTTCTTCCTAATCT
TCATCTTCTTCGTATGCTGTTGTTATTACGTCAAAAAAAGACGCAGCCGT
cgttcaaatgacgtcattgtttatTCTGCTAGATCAAATACAGTGAGCAG
TGTGCCATATGGTCATGAAGTGTTGTACACTCCATCACAGAATACACATT
ACTACATGGCCCCTGTCATGGCTTCACCCAATACACCTTTCATTGggCAA
GGATACCCACAAGCGTATATTTATCCGCCGCAATCCACCAGTGGTTACAA
ACCAGCAGTTGTTAGCAGTGCTCCTTATTTAGATGAAAAATCATAAaaat
gtgaaattaaaagaataagattttttaaaagtgaCTCTGTGCTCATCGAG
CAGATCAATAAACCGATATCAATCAATAAAATTGTGATTATGGTCATTTA
TTTATTGGCTTTTACTCTTTTCAGCTTGACCTTTGATGAGGTCAAGACTC
ATTTCAATTGTGAGTTTGATAAATGTTCATCAGCAGAATATTGTTGTGCT
CAAGATGTGTGTTGTGCTAAGCGTTACCCTGTTTGGGATCTCTGGTATTT
CTGGTTCACTTTCTTCCTAATCTTCATCTTCTTCGTATGCTGTTGTTATT
ACGTCAAAAAAAGACGCAGCCGTcgttcaaatgacgtcattgtttatTCT
GCTAGATCAAATACAGTGAGCAGTGTGCCATATGGTCATGAAGTGTTGTA
CACTCCATCACAGAATACACATTACTACATGGCCCCTGTCATGGCTTCAC
CCAATACACCTTTCATTGggCAAGGATACCCACAAGCGTATATTTATCCG
CCGCAATCCACCAGTGGTTACAAACCAGCAGTTGTTAGCAGTGCTCCTTA
TTTAGATGAAAAATCATAAaaatgtgaaattaaaagaataagatttttta
aaagtgaCTCTGTGCTCATCGAGCAGATCAATAAACCGATATCAATCAAT
AAAATTGTGATTATGGTCATTTATTTATTGGCTTTTACTCTTTTCAGCTT
GACCTTTGATGAGGTCAAGACTCATTTCAATTGTGAGTTTGATAAATGTT
CATCAGCAGAATATTGTTGTGCTCAAGATGTGTGTTGTGCTAAGCGTTAC
CCTGTTTGGGATCTCTGGTATTTCTGGTTCACTTTCTTCCTAATCTTCAT
CTTCTTCGTATGCTGTTGTTATTACGTCAAAAAAAGACGCAGCCGTcgtt
caaatgacgtcattgtttatTCTGCTAGATCAAATACAGTGAGCAGTGTG
CCATATGGTCATGAAGTGTTGTACACTCCATCACAGAATACACATTACTA
CATGGCCCCTGTCATGGCTTCACCCAATACACCTTTCATTGggCAAGGAT
ACCCACAAGCGTATATTTATCCGCCGCAATCCACCAGTGGTTACAAACCA
GCAGTTGTTAGCAGTGCTCCTTATTTAGATGAAAAATCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061590-exon-scaffold_36-1491911889:869653..869798 | TCONS_00061590-exon-scaffold_36-1491911889:869653..869798 | Clytia hemisphaerica | exon |
| TCONS_00061590-exon-scaffold_36-1510915933:869653..869798 | TCONS_00061590-exon-scaffold_36-1510915933:869653..869798 | Clytia hemisphaerica | exon |
| TCONS_00061590-exon-scaffold_36-1575043694:869653..869798 | TCONS_00061590-exon-scaffold_36-1575043694:869653..869798 | Clytia hemisphaerica | exon |
| TCONS_00061590-exon-scaffold_36-1491911889:870663..870775 | TCONS_00061590-exon-scaffold_36-1491911889:870663..870775 | Clytia hemisphaerica | exon |
| TCONS_00061590-exon-scaffold_36-1510915933:870663..870775 | TCONS_00061590-exon-scaffold_36-1510915933:870663..870775 | Clytia hemisphaerica | exon |
| TCONS_00061590-exon-scaffold_36-1575043694:870663..870775 | TCONS_00061590-exon-scaffold_36-1575043694:870663..870775 | Clytia hemisphaerica | exon |
| TCONS_00061590-exon-scaffold_36-1491911889:871001..871215 | TCONS_00061590-exon-scaffold_36-1491911889:871001..871215 | Clytia hemisphaerica | exon |
| TCONS_00061590-exon-scaffold_36-1510915933:871001..871215 | TCONS_00061590-exon-scaffold_36-1510915933:871001..871215 | Clytia hemisphaerica | exon |
| TCONS_00061590-exon-scaffold_36-1575043694:871001..871215 | TCONS_00061590-exon-scaffold_36-1575043694:871001..871215 | Clytia hemisphaerica | exon |
| TCONS_00061590-exon-scaffold_36-1491911889:871552..872065 | TCONS_00061590-exon-scaffold_36-1491911889:871552..872065 | Clytia hemisphaerica | exon |
| TCONS_00061590-exon-scaffold_36-1510915933:871552..872065 | TCONS_00061590-exon-scaffold_36-1510915933:871552..872065 | Clytia hemisphaerica | exon |
| TCONS_00061590-exon-scaffold_36-1575043694:871552..872065 | TCONS_00061590-exon-scaffold_36-1575043694:871552..872065 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:869653..872065 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021684 | WBP1-like |
Blast
The following BLAST results are available for this feature:
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