TCONS_00061591 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061591
Unique NameTCONS_00061591
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2700

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061591 ID=TCONS_00061591|Name=TCONS_00061591|organism=Clytia hemisphaerica|type=transcript|length=2700bp
TTTCAGTAATAACACtttaaatggaaaaataaaatgacATCATCCAATCA
AGGCTCTTTGCACACTTTGGGTGATGAGGGTGCAGCAAATTATATTGAAG
AAACCTTGAGTGACCAAGAACCATTACTGTCCAATGAAATCCCACCACCA
TTGCACCCAGACCCTTTTCATAATGTCCCAAGACAAGCAGACTACGAGAA
TCCTCCAATCAACCCTTACTACATTCAACAGTCTTATGATGATCGGATGA
AATCAACTATTTACGATGAAGACACACACTGTTTTTCAATGTCTCGTGTT
CGACGAATGTTTTGTTTGTTGTCACTATTTGATTGTTTAATGACTTTCTT
GATGTGGGTTATTTATCTTCAGctttcagatggtggaATTACAGATAATT
TGGCACCTGAAGTTAAAAACCTCACAATCCACACTTCACTATTTGATATa
gttTTATGTTCAATTACGAGGTCACTTGTTTTGTTATTATTCTATTCTTG
TTTGATCAAAAGCACAAAATGGTATGCTGTCGCAttaACTACTTCGGCAA
GTACAATATTTCTATTGATGAAGGTCTTCTTGCTCAAAGGAGAATATTAT
CACAAAGGAAACCCGATCAATTTTTTCCTGATTATATTCTCATTTATTAT
TACGTGGTGTGAAGCTTGGCATTTCGATTTCAAAGTTATCCCGCAAGAAT
TACAAACCAAAAACTTGGGAGATATCAGAACAAGTTCTTTACCACCGATT
GCTGGAGGTAGCTTCTTGGCAAGCGATCAACAAAGGAGACAGAATAACCG
GGGTGGAAGATCACGTTTTGGCGCGCCATCAAGCTTTTACACTCCTTATG
CTGGGTCAAATTATTATGGTGGAGGTAAATCACACATCAGCGAGGAGAGT
GAAGATGATAGTCAATGCAGTGATATCTCCGCCGAACTTGGTAGACTCTC
CGATCAAGAGGATCACGCATTGATTCGTAAAGCCAACGATACTTTACATA
TGGTCTTCCGAATGCTCTATATCAGTGATGGATGGAATATGTGTCGCGAG
GAAAAAGACAATATCATTGTACAATCTCGTAATTTTGATGGTGTTGGTAA
AGTTTATAAGCTAGAGgcaGTAATTGACGTAAATAGCTCAGTGTTGGATC
AAGTATTTTGGGTGGATGTAGATTCTCAACCTTCTTGGAATGCCTCCGTC
AAAGAATGCAGGATTCTCCGAAAGATCAATAAACTATCAGATATAATTTA
CAGTGTGGCGGCAGAAGCCGGCGGTGGCATTATCTCTTCAAGaGATTTTG
TCAGTCTGAGACGACGTAAGCGTAAAGGACCGCTAACTTTACTTTGTAAT
GTCAGTATTGAAACACCTCTTATGCCACCTGTATCAAGTATTGTCAGAGG
GAAGAACGGCCCTGGAGGCTGGGTTCTCCGTGATATTCCTGGTGAACCAA
ATAAAACAGAATTCATTTGGTTATTGAATACAAAATTGGGTGGCTGGTTA
CCTCAAAAACTGGTAGAAACATCTCTGGCAGGTGTTATGGTGGATACTGT
AAGAGATATTCGTCAACATGTATCAACTACACTGTTACCTACGTAAAGAT
TACCTCGAAGGGagtatagtttattttaatttcaCACCCCTTGCAACTGA
CCTTGTGGGGAAAAAAGATTAGGCTAATtttgcgtccaatgaaaagTACC
CTGAATAATCattactttcaaaaaatttactAAACTGTCATCCCGTTTTT
GAAAAACGTTAACATTTTATTTGTGGTTAATTTTTTCGGTCTGTAGAATA
TGAAATTCATTTATTAAAGTACAAAAAATTATATCTTGACTGCAAAAGTT
TCTCGCCCTGTTACTTAGGAGCAGTAAGACTTTAACCCTCTTTGTACTTT
CGTGTATTTGAAAGGGTCTTTTGTTTATGAAAAAGCCGGTTCTAATTTTC
TGAACGGCAGGAGCAAACCTTTGTTtttgatttagaaaaaaaatgctaaa
ttaGACTTTTCAGCACTGCTGTaagatttttattaaaatttaattaggcg
agaccaatttgattagttgctttacgggcccgaccgaccctgaaattccg
aaaatcgaaataaaaataaaattgattttggtaatcaataattcttcttt
tatttttattttttcgccgaccgaccgaccgacccactatttttgggtag
cttggcccgtaaaacaaccatTTAAATTTGCCTCGCCTtacgttttaaaa
tgagatttttatatcattttgaCCTATGGTTTTTAAGTTTGAGTTACAAG
TTGTGGCTTTTACAGTctttaaacttcatttttttgtttaactcTTTCGA
AAGTCCAGGgtttttgtaaagttttcttGTTAATTTTCCGTTCATTGTTG
ACAGTTTTTACATGCCAAATTTTGTAAATGATCTGACACTTTTCTGAACG
CCAAAGTTCCTACAACAATTACTACAACAATTGTTTATagaaattctggg
taatatcaaataaaatgtaaatttgaaaataattttgaaattttatgtaa
TGATGCATGCATAGACTGGTATATCTATTCCCAGCTATTCCtttcatttt
gtaattttcgttcttttttttattttgacttttcattgtttttgtatttt
ttatatagATATCATGCGAGAATTTCGAAATAATATATATTAGATATGGT
Run BLAST on NCBI

transcript from alignment at scaffold_36:891490..901006+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061591 ID=TCONS_00061591|Name=TCONS_00061591|organism=Clytia hemisphaerica|type=transcript|length=9517bp|location=Sequence derived from alignment at scaffold_36:891490..901006+ (Clytia hemisphaerica)
TTTCAGTAATAACACtttaaatggaaaaataaaatgacATCATCCAATCA
AGGCTCTTTGCACACTTTGGGTGATGAGGGTGCAGCAAATTATATTGAAG
AAACCTTGAGTGACCAAGAACCATTACTGTCCAATGAAATCCCACCACCA
TTGCACCCAGACCCTTTTCATAATGTCCCAAGACAAGCAGACTACGAGAA
TCCTCCAATCAACCCTTACTACATTCAACAGTCTTATGATGATCGGATGA
AATCAACTATTTACGATGAAGACACACACTGTTTTTCAATGTCTCGTGTT
CGACGAATGTTTTGTTTGTTGTCACTATTTGATTGTTTAATGACTTTCTT
GATGTGGGTTATTTATCTTCAGGTTTGTTATAATGTTCATCCCAAATTAT
TCTGAAGAATGCATTTGCTTTTCCAATCAATGACCCAAACTGATAATATA
GTATTTTTTTCAGTGTGTCcagacaaaaagaacaaaatataaaaataaaa
atccttaTATACTTTATAAGGTTTATAGcccaggcaaaaataaaaaaatc
taggTTTCTGGAAACTGGCCGgatgaaagaaagaaattttctgACCTGTT
GGCAGACTGTAtagttcatcataaagaaaattaagtttgccgttcaagct
atcaaacgttgtttggttagatattcccacttgtaaatcaagtttgttcg
ttagtagttgatatattagtattcagggcttactttaTACTGTTTTTACA
tgaaagttatctttaaagttctatttcaatgatcttaagttaatATAGTA
TCaaatatagcaaaaaaaaatcttttccggccAGCCGCATGAgatctttt
ttccttcacccgcattctggaaacactacatttttttatttttgccctat
gttcatttatttattaaatGTCTGTTTTTATAAGGATTAAATAAATTCCA
TCTTATTTCAAGTAATGGAACTCAGAgagtttttcaaacatttgttTCAC
TTTTTCCTGCTTAGCGCTTCATTTGTTTGGAATATTTTACTTATCCTttt
cagctttcagatggtggaATTACAGATAATTTGGCACCTGAAGTTAAAAA
CCTCACAATCCACACTTCACTATTTGATATagttgtaagattgtttatga
TTTTATATTAAACCCAAATTCCTAATTTGATACTTTTACAgtatttgaaa
aagatttatggGTTATTTAAAAAACCTAAGGAGACTTGTGCACACGCATT
GTGGTATATCCCTTTTGtctagtttttcttttagaatgattatatttttc
aattaatttgtCCTGCAGTAATTTCTTTCACGGTATTCAGATAGAATACT
TTATAGAAGTGAGTACATTAAAACTTGTATGTTTTCTCACAAAGTAAAAG
AGGGTGCAACCTGGATTTTTATGTACTTTATATGTATCAATCAGttattt
ttcatattctttTCCAGTTATGTTCAATTACGAGGTCACTTGTTTTGTTA
TTATTCTATTCTTGTTTGATCAAAAGCACAAAATGGTATGCTGTCGCAGT
AAGTTCACTTTATAAgcgattttccttttttgccccCCAGACTTGCGatt
tgaatgaaaagaaaacaccTACATTTTTTTCCATTGATTTATTCATTTAG
ATATATTGATTTGGTACcctgtttttctattttcagtagTGTAATGCATT
TCCCTTGAATGCATTAAAATAACTACCCATACCCTCTCGTGCTTCTGGCA
TGGATTGACCTAAGCAAGATTTGTTCACTCGTCAAAGAGACCTCtacgag
taggattcgaacccgGGGTCAATCATCTAAAGATGAGTTCATCACATTGT
GATTTATTATTCAGGGTACAAATCCATGGTATAATTTTGCTTTGATAAAT
TGTTAGATTGTTGTTTACAATGACTGATTTAAGGACCGTTACCactattt
tgccattttttgtgaagctttatttttatatttttcagttaACTACTTCG
GCAAGTACAATATTTCTATTGATGAAGGTCTTCTTGCTCAAAGGAGAATA
TGTAAGTGCCAGTTAATCATTTCTttgatttgtaaaatttttgaattttt
tatgccAAGTTTTTTTAACCAAATCAATCTCTTTCTTTaatgttaaaaaa
tgttcgatcCCAATTTCAAAGCTAGATTTGTAACGAATATCTTTGTAAGT
AAGATTATGGTGTTTGTTTAGGAACGAATTTTTGCTAAAGATTTTAGATA
TTTGATGAGCAGTTTTAGACTGAGCCAAAATCTTCTTGTTCTTAAAAAGT
CAATTAAATGTAAATAATATAGACTGGACTcaaatcattttctttcttta
tttccaGTATCACAAAGGAAACCCGATCAATTTTTTCCTGATTATATTCT
CATTTATTATTACGTGGTGTGAAGCTTGGCATTTCGATTTCAAAGTAAGT
TTTGTTTTATGATGACGGCCTTTTTTGAAGTGAAGTCGAAATTTTACCTT
TATTTCTGAACCTCCAAATTATCAACTATGACTGAACCACTGATCTTTTA
ATAAATAAGTCGAGGGGGTCTACGTTCCATTTTCCTTTCGTTGTATTTGa
ttataaaaacagaaaaatgaaaattataacTTTGATAAGTGGAATGAAAA
AACCTTTTCGTTCCTATTATGTGCTACCTATGACAATAACTCTAATGAGc
agctttgtttattttttcttggTTAGGTTATCCCGCAAGAATTACAAACC
AAAAACTTGGGAGATATCAGAACAAGTATGTAAGCCACAAAAATATAAGA
CTTTAACCTTCCTTCAACTACATAAGCTTTGAGGAAAAGTAATCATATAC
ATTATACATAATACATTTCGTTTTGAGGAgctgaatttgaaattataGCT
CAACAAGTAGTGtaaaaataattcgaaaatTCTACTCCCAAAGGCCTCGT
CATaataaagaaatcaaacaagaaaggatcattttcaaaactttattgTA
AATTCTGTTATTTCATTGAAGGTTCTTTACCACCGATTGCTGGAGGTAGC
TTCTTGGCAAGCGATCAACAAAGGAGACAGAATAACCGGGGTGGAAGGTA
ATTTAGATGTTCATCCCGTTNCGCTGGAGGTAGCTTCTTAGCAAGCGATC
AACAAAGGAGACAGAATAACCGGGGTGGAAGGTAATTTAGATGTTCATCC
CGTTTGAAAGTGGCTCTTTTTTTAGGGCGTCATACTTTGTTGATTCTGTA
TTTTCAATACTCATTTGCATCATTTGTTCACAAAATTCTAAATACTAAAT
CGTCATATGATTAAAGTAGGTAGCTTTACTGCTAATATTTATTTCTTGTT
TTAGATCACGTTTTGGCGCGCCATCAAGCTTTTACACTCCTTATGCTGGG
TCAAATTATTATGGTGGAGGTACAGTATAAAATTAACTTCGATGTCCCGC
GATTGTGGTAAAAGTAAAAAGACGAATTATTTACCGCGATTACAAGATGT
AAACGAAGATACATACCTTTTCACAGGATAACCCTAACTGTTTTTGGGCT
TCTATAAGAAGTAAAAAATTGTACTCAAGTCTTCATTAATCGAATTATAA
CAAAAGCTTTCAGTTTAAAGCCGCTGCTGTCTGACCAGGAAATACACGAC
ACCAGGCTGATGTATGTATTAACTTTTTATAATAATCGATTTATTCTTTT
CTTGATAGGTAAATCACACATCAGCGAGGAGAGTGAAGATGATAGTCAAT
GCAGTGATATCTCCGCCGAACTTGGTAGACTCTCCGATCAAGAGGTATAC
TTTCTCATTATTTTAATGTCTATTTTAAATTGTTATTCTTAATTGACAAG
TTTCTTAATCGAAGTTCCGTCATATTTAGGTTTTTTTTCATGGTTGATTG
CAACTGGattatatacattttttaaaagCACCTTCAAATTCAGGCTTGTT
ATTGGAGTTGCATAGCAACCTAGCTCAACCCTAATAGTAATATCATACCA
ACTTTAATTCTATACCATATTTATGATCTAGTTCCAGGATACCTCTTTTG
CAAAATTATTGTATTGTATACTACCCggcatttttttcaatatacaGTGG
ACTAAtgttaattcgaacttctattattccaATGATCTTTCCTTAATTCG
AACTTTTGGTCCCTGTCAAGAGAAAACCCTTGTACCATATTTGTattatt
cgaatattttctAATGCGAGAATCCCCACTTGAGTTTGAGTTAGCGGGAA
GTTACAAATTATGTTGAAACATCATTGTTTACAGGATCACGCATTGATTC
GTAAAGCCAACGATACTTTACATATGGTCTTCCGAATGCTCTATATCAGT
GATGGATGGAATATGTGTCGCGAGGAAGTAAggcggaaatttttttttga
gccTTCTGTGATAATTATATCGGTTTGAAATTGTTCATGATAAATGACTC
TTACCGTCCATATTGTGGAAGCACTCAAGGTCATTGCTTACGCTGACAAA
CAAATGTACACTTATCTAACGCCTTTTTGATCGGATCAATAAACATTGCA
AAATCTTAGAAATGCCTAAAGATAAAACGAAGTGTAACAGAATGTACGTA
TTTACGATCCAAATGTCTACCTGAAGTCCGTTCTTTTCACGTGATGGAAA
CCATGTCAGCATAATTAGAACAATTCCCTTGAGGGTGGCTTAAaacgaaa
ttttcttcaattgaTCGTGATAATTCAGTTATATCTCTTAATTTTCAGAA
AGACAATATCATTGTACAATCTCGTAATTTTGATGGTGTTGGTAAAGTTT
ATAAGCTAGAGGTATAACCATACTCTTCTCTGTAATCCTTGTTGCAGGAA
CTCAATGCCAGTCTGGTCCTAGTTGACTTCTGTGTATCTAATCCCATCTT
CATGGGGCCAAGAATTTTTTCGAAtcatagaaagattcaaattatgGAGA
GCATTTTATATCACTTTCAAGCTACGTGGACAAATGCTGATTGACTAAAT
GAAGAATCAGCTGACAATTGCTTTATAACTTCGTTGTTTTGTATTATGCT
AGAAAAATTTTTCAGGTCattaatttatttaattgtagatgtatctttca
tttttcaggcaGTAATTGACGTAAATAGCTCAGTGTTGGATCAAGTATTT
TGGGTGGATGTAGATTCTCAACCTTCTTGGAATGCCTCCGTCAAAGAATG
CAGGGTAATAAAGTCTTCCTTAAGGTCGATATTTCATTACAAAAAATGTA
GTTATTCCATTGTTGGATCTTACTTgaatgttgaaaattgaaatggaCTC
ATCTAGTCTAGCAtgccaaaaaaagaaaaagtagtcTGCATTTGCTAGAT
GGGTATGTCTCTTCAGCGGTGCAATTTGCTCCATCTGGCCCTATACCAAC
AGCTATCAGAGCTACTTCAAGCGACCGTAGCacgaaggtagagcatccag
ctgcggtgcgcaaggttgtgggctcgatccccagccgggtcataccaaag
attcccaaaatggtacttgatgcctctctgcttggtACCTCTCtgtttga
tgctcagcaactaaagagacggatcaagggtaagtggagaaatccaggga
aaggagtggcgccctcccctaccttcgggtagacagctatacgaaaaggg
agccttcgggtcgccctcgactgcggtcgcaaacttacttactttacttt
AATCTAGCATTCTATTCGTTTTGTAAGCACGCTTCTTTCTTTATGGCATA
AGCTTTTCTCCGATCAGTTGCGTTTCATCTGAGACCTCTTTTTCCTCCAG
TACTGACATTTTGTCCTCGATTTGGTTTTAGATTCTCCGAAAGATCAATA
AACTATCAGATATAATTTACAGTGTGGCGGCAGAAGCCGGCGGTGGCATT
ATCTCTTCAAGGTAATATGTTATTTAAAGCGCTTGGGAAGATATTTATTA
TGCAAGCTTTAACGTTTTGTTAAAAAACATCGGTTAAACAGATGGTTAAG
CTCGAGATattcaagtttttattttattgtcgTGCGGAATCTTGATTTTG
AAAGTAgttagataaaaaaaagaaggaTGAAAATAGTTGAACCTGAAACT
TTTGTCATCGATATTACAACAAATACTGAAAGGGAATAGATCGCAATTGT
AGTTTACGCACGCGCTGACTCGCGGTGGTTTAATTGCAAAAGGTAGATTA
CACTGATGNGCACGCGCTGACTCGCGGTGGTTTGATTGCAAAAGGTAGAT
TACACTGATGATGAAACCATTTTTGCCatcattcaaaaaataaaatacac
accttttttgtaagaacacgAGCCTGAAATTTGGGAATAAATCTAAGAAC
AAGTCATGAACAATCTGAGCATCCACTTTTGAATAGAGAAGGAAGCTAAG
TGTATTAAGAACACATTGAGAACATctgaaaaccttaaaaatttcaagaa
aaactgaGCAACCAAGTGAGACTCCGTCTAAATCTTCTGGTTTTTAGTAT
AAAAAGCCTGTATCTTATTTAATCACACAACtattctgttgtttttttca
gaGATTTTGTCAGTCTGAGACGACGTAAGCGTAAAGGACCGCTAACTTTA
CTTTGTAATGTCAGTATTGAAACACCTCTTATGCCACCTGTATCAAGTAT
TGTCAGGTTTGTAAAGCAATTACTCTCAGGTTCCAAATAAATAGGGGGGT
CGGAATAAACGAGGGTTTTGGAAAttatgttggaaaaaaatcttaaTAAA
TTGAGGGACCTTACTGTTGTAGATCAAAACAAGGACTTGATAGTTTTAAT
CTAAATCTTTCTGAAaaccattttatgattttaacggTTGCTTGGAATCA
CTTACTTGTTATTAGTCCTATTATCAACTCTTATTAATGGAATGAGAAAT
CTTGGTCATGATTTTATGAGGGAAGTAATTAGGGAATTATCTAATTGCAA
ATTTCTGGTAAAACTCTAGTTTTTAGCCTTATTACACGTTGAAAAAGGAG
TACATTCGGTAGTGTTTGCCAACTCGATAATACCAAGCTTTTCTTGCTTG
TTTTGTAACtgattcttgtttttttttatgtcaACAGAGGGAAGAACGGC
CCTGGAGGCTGGGTTCTCCGTGATATTCCTGGTGAACCAAATAAAACAGA
ATTCATTTGGTTATTGAATACAAAATTGGGTGTAAGTAAACGaactttct
ttctttatttttttagNATTGAATACAAAATTAGGTGTAAGTAAACGaac
tttctttctttatttttttagttttttttaatatgcTTTGTCATGATTTC
TGACAATTACaataagaccatgttcacacgttactgttccgtttcgctcc
ggtatgatttcCGTTACGTATCGAGTATGTTCACATGAtctcggaacgtt
tcggagcaagaaagcggagcagttccgttccgatgaaaaaagtggagcga
aacagTTTCGATCTGtattgctttgtaacgtcttctttttgacgtttcga
attttgacgttcataccatagatttataaattttgacgttcatacttgtt
tcggaaccgtttcgtttcggaacggaacagAACCGtgacgtctgaacatg
gtctaagtaTAGAGTAGTTGGCGAAATATATAAGCCAATGGTTTACCTGG
CTATGTGGAATGGTTGCTAAAACTTGCTAGGTTCGATCAAGCGAGGACGC
ATTGTCCTCCCGAGTCGTTCGAGTATATAGTTACTATAcaattagactgg
agtcgtttataatgcgtgtaatactgataataccaatactaataataata
ataataataatacgggatttagtttgtataaacgactggaagaatccggt
gttccagccttacagataccccggctagctacgcagaaacttgcgtagcg
agaaaacaatttatcaagcaacaacaaactctcaaaacgaaatcaactca
aatgaaaaactttcaatacacaaatccagacatattttttttctcaagaa
ttattttgagaaggaaaaaatcataattgcaatattgacacttttctttt
gtttggagttagtgcacaaaggtttctagacgactaaaattgttccattc
attactttttgctttatttctactatgtataaattagtcgtctagcttgc
tagactactaTACAATAGCAGCTCTTTTAGTCGAAGATGATCCTCCAAAC
GGTGGcataaaatttcatgctctgtgaaaaaaaacaactctTTTTCCTTT
TCATATTGTTTGGTAGTGATCAAATAGAATTctttatttcttgatatttt
gtcTTCAGGGCTGGTTACCTCAAAAACTGGTAGAAACATCTCTGGCAGGT
GTTATGGTGGATACTGTAAGAGATATTCGTCAACATGTATCAACTACACT
GTTACCTACGTAAAGATTACCTCGAAGGGagtatagtttattttaatttc
aCACCCCTTGCAACTGACCTTGTGGGGAAAAAAGATTAGGCTAATtttgc
gtccaatgaaaagTACCCTGAATAATCattactttcaaaaaatttactAA
ACTGTCATCCCGTTTTTGAAAAACGTTAACATTTTATTTGTGGTTAATTT
TTTCGGTCTGTAGAATATGAAATTCATTTATTAAAGTACAAAAAATTATA
TCTTGACTGCAAAAGTTTCTCGCCCTGTTACTTAGGAGCAGTAAGACTTT
AACCCTCTTTGTACTTTCGTGTATTTGAAAGGGTCTTTTGTTTATGAAAA
AGCCGGTTCTAATTTTCTGAACGGCAGGAGCAAACCTTTGTTtttgattt
agaaaaaaaatgctaaattaGACTTTTCAGCACTGCTGTaagatttttat
taaaatttaattaggcgagaccaatttgattagttgctttacgggcccga
ccgaccctgaaattccgaaaatcgaaataaaaataaaattgattttggta
atcaataattcttcttttatttttattttttcgccgaccgaccgaccgac
ccactatttttgggtagcttggcccgtaaaacaaccatTTAAATTTGCCT
CGCCTtacgttttaaaatgagatttttatatcattttgaCCTATGGTTTT
TAAGTTTGAGTTACAAGTTGTGGCTTTTACAGTctttaaacttcattttt
ttgtttaactcTTTCGAAAGTCCAGGgtttttgtaaagttttcttGTTAA
TTTTCCGTTCATTGTTGACAGTTTTTACATGCCAAATTTTGTAAATGATC
TGACACTTTTCTGAACGCCAAAGTTCCTACAACAATTACTACAACAATTG
TTTATagaaattctgggtaatatcaaataaaatgtaaatttgaaaataat
tttgaaattttatgtaaTGATGCATGCATAGACTGGTATATCTATTCCCA
GCTATTCCtttcattttgtaattttcgttcttttttttattttgactttt
cattgtttttgtattttttatatagATATCATGCGAGAATTTCGAAATAA
TATATATTAGATATGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038641XLOC_038641Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061591-exon-scaffold_36-1491911889:891490..891861TCONS_00061591-exon-scaffold_36-1491911889:891490..891861Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1510915933:891490..891861TCONS_00061591-exon-scaffold_36-1510915933:891490..891861Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1575043694:891490..891861TCONS_00061591-exon-scaffold_36-1575043694:891490..891861Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1491911889:892543..892623TCONS_00061591-exon-scaffold_36-1491911889:892543..892623Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1510915933:892543..892623TCONS_00061591-exon-scaffold_36-1510915933:892543..892623Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1575043694:892543..892623TCONS_00061591-exon-scaffold_36-1575043694:892543..892623Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1491911889:892957..893037TCONS_00061591-exon-scaffold_36-1491911889:892957..893037Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1510915933:892957..893037TCONS_00061591-exon-scaffold_36-1510915933:892957..893037Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1575043694:892957..893037TCONS_00061591-exon-scaffold_36-1575043694:892957..893037Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1491911889:893478..893540TCONS_00061591-exon-scaffold_36-1491911889:893478..893540Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1510915933:893478..893540TCONS_00061591-exon-scaffold_36-1510915933:893478..893540Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1575043694:893478..893540TCONS_00061591-exon-scaffold_36-1575043694:893478..893540Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1491911889:893847..893933TCONS_00061591-exon-scaffold_36-1491911889:893847..893933Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1510915933:893847..893933TCONS_00061591-exon-scaffold_36-1510915933:893847..893933Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1575043694:893847..893933TCONS_00061591-exon-scaffold_36-1575043694:893847..893933Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1491911889:894216..894264TCONS_00061591-exon-scaffold_36-1491911889:894216..894264Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1510915933:894216..894264TCONS_00061591-exon-scaffold_36-1510915933:894216..894264Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1575043694:894216..894264TCONS_00061591-exon-scaffold_36-1575043694:894216..894264Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1491911889:894511..894586TCONS_00061591-exon-scaffold_36-1491911889:894511..894586Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1510915933:894511..894586TCONS_00061591-exon-scaffold_36-1510915933:894511..894586Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1575043694:894511..894586TCONS_00061591-exon-scaffold_36-1575043694:894511..894586Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1491911889:894844..894908TCONS_00061591-exon-scaffold_36-1491911889:894844..894908Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1510915933:894844..894908TCONS_00061591-exon-scaffold_36-1510915933:894844..894908Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1575043694:894844..894908TCONS_00061591-exon-scaffold_36-1575043694:894844..894908Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1491911889:895198..895283TCONS_00061591-exon-scaffold_36-1491911889:895198..895283Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1510915933:895198..895283TCONS_00061591-exon-scaffold_36-1510915933:895198..895283Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1575043694:895198..895283TCONS_00061591-exon-scaffold_36-1575043694:895198..895283Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1491911889:895774..895866TCONS_00061591-exon-scaffold_36-1491911889:895774..895866Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1510915933:895774..895866TCONS_00061591-exon-scaffold_36-1510915933:895774..895866Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1575043694:895774..895866TCONS_00061591-exon-scaffold_36-1575043694:895774..895866Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1491911889:896238..896300TCONS_00061591-exon-scaffold_36-1491911889:896238..896300Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1510915933:896238..896300TCONS_00061591-exon-scaffold_36-1510915933:896238..896300Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1575043694:896238..896300TCONS_00061591-exon-scaffold_36-1575043694:896238..896300Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1491911889:896598..896693TCONS_00061591-exon-scaffold_36-1491911889:896598..896693Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1510915933:896598..896693TCONS_00061591-exon-scaffold_36-1510915933:896598..896693Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1575043694:896598..896693TCONS_00061591-exon-scaffold_36-1575043694:896598..896693Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1491911889:897321..897400TCONS_00061591-exon-scaffold_36-1491911889:897321..897400Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1510915933:897321..897400TCONS_00061591-exon-scaffold_36-1510915933:897321..897400Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1575043694:897321..897400TCONS_00061591-exon-scaffold_36-1575043694:897321..897400Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1491911889:898041..898145TCONS_00061591-exon-scaffold_36-1491911889:898041..898145Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1510915933:898041..898145TCONS_00061591-exon-scaffold_36-1510915933:898041..898145Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1575043694:898041..898145TCONS_00061591-exon-scaffold_36-1575043694:898041..898145Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1491911889:898577..898670TCONS_00061591-exon-scaffold_36-1491911889:898577..898670Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1510915933:898577..898670TCONS_00061591-exon-scaffold_36-1510915933:898577..898670Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1575043694:898577..898670TCONS_00061591-exon-scaffold_36-1575043694:898577..898670Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1491911889:899798..901006TCONS_00061591-exon-scaffold_36-1491911889:899798..901006Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1510915933:899798..901006TCONS_00061591-exon-scaffold_36-1510915933:899798..901006Clytia hemisphaericaexon
TCONS_00061591-exon-scaffold_36-1575043694:899798..901006TCONS_00061591-exon-scaffold_36-1575043694:899798..901006Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:891490..901006 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.60029	4.28058	1.14537	0.497044	9.2363	7.15251	9.30789	13.3363	8.87431	7.46048	8.92009	6.2455	5.62273	4.96634	9.50256	11.4286	9.87912	9.74492	8.59949	10.4563	8.21633	8.39024	13.3372	14.599	4.84945	6.84128	7.52377	6.67615	20.5468	16.4983
Blast
[Close]
BLAST of TCONS_00061591 vs. Swiss-Prot (Human)
Match: STAR3 (StAR-related lipid transfer protein 3 OS=Homo sapiens GN=STARD3 PE=1 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 1.064e-44
Identity = 133/438 (30.37%), Postives = 206/438 (47.03%), Query Frame = 1 
Query:  286 SMSRVRRMFCLLSLFDCLMTFLMWVIYLQLSDGGITDNLAPEVKNLTIHTSLFDIVLCSITRSLVLLLFYSCLIKSTKWYAVALTTSASTIFLLMKVFLLKGEYYHKGNPXXXXXXXXXXXXTWCEAWHFDFKVIPQELQTKNLGDIRTSSLPPIAGGSFLASDXXXXXXXXXXXSRFGAPSSFYTP---YAGSN-----YYGGGKSHIXXXXXXXXXXXXXXAELGRLSDQEDHALIRKANDTLHMVFRMLYISDGWNMCREEKDNIIVQSRNFDGVGKVYKLEAVIDVNSSVLDQVFWVDVDSQPSWNASVKECRILRKINKLSDIIYSVAAEAGGGIISSRDFVSLRRRKRKGPLTLLCNVSIETPLMPPVSSIVRGKNGPGGWVLRDIPGEPNKTEFIWLLNTKLGGWLPQKLVETSLAGVMVDTVRDIRQHVS 1575
            ++S VRR FCL   FD L   L+W+I L  ++ GI  NL  E+      TS FDI + +  R   LLL Y+ L +   W+ +A+TT  S+ FL++KV L   E   KG    + L I SF++ W E W  DFKV+PQE + +       ++   +A G  L S                +   FY+P   +AGS+        G KS                      S QE    IR+  +   +V ++L   + W   +  +    V +      GK + L+  +   + ++ Q   +  +    WN +V  C+IL+++   + I Y V+A A GG++S RDFV++RR +R+    L   ++      PP    VRG+NGPGG+++      P    F+W+LNT L G LP+ L+  SLA  M +    +RQ +S
Sbjct:   45 AISDVRRTFCLFVTFDLLFISLLWIIELN-TNTGIRKNLEQEIIQYNFKTSFFDIFVLAFFRFSGLLLGYAVL-RLRHWWVIAVTTLVSSAFLIVKVIL--SELLSKG-AFGYLLPIVSFVLAWLETWFLDFKVLPQEAEEERW---YLAAQVAVARGPLLFSGAL-------------SEGQFYSPPESFAGSDNESDEEVAGKKS---------------------FSAQERE-YIRQGKEATAVVDQILAQEENWKFEKNNEYGDTVYTIEVPFHGKTFILKTFLPCPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNVRRIERRRDRYLSSGIATSHSAKPPTHKYVRGENGPGGFIVLKSASNPRVCTFVWILNTDLKGRLPRYLIHQSLAATMFEFAFHLRQRIS 439
The following BLAST results are available for this feature:
BLAST of TCONS_00061591 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STAR31.064e-4430.37StAR-related lipid transfer protein 3 OS=Homo sapi... [more]
back to top