TCONS_00061629 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061629
Unique NameTCONS_00061629
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2855

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061629 ID=TCONS_00061629|Name=TCONS_00061629|organism=Clytia hemisphaerica|type=transcript|length=2855bp
ATGTTTTTGACGTTTTGTGCCGGCTTAGTTTGCGCCAATAGAAGTAACGA
TCATGTTTAGTTTAATTCCCGCAAAGCTCTAGGTATATGATCGTTTTTTT
AATCGGTTTTTCTCGTACATCGATAAACTAAAGGGTATTTATTGACACGA
ACTACGGCAGTGTATTTGACTCGAACCGACTGAATCACAATTTGTATTTG
TCAAACGTCTTTCCTTTGTGGATATTTgagagaatttgaaaaatacacaT
CCTCTTTGCACAGGCTGCCACCAAACACAACACTTACTGACATCAAAATT
GACATGCGGCAGGGTTGTGAAAATGTCGAGTACTATTTATCTTTGTTGAT
TGATGTTGCTTCGCTTGTATATACATACAACATGAACATTGCATTTTTAC
GACAATTGGACAGGTTTACATTTGTTGATATCAATCATCAGTGAGAAGTT
TTATGAGAGGTTTCAGATGTATTTGCGTTCAAAGTTGATgtgttttcatt
tgtttaatGCGAGAATGGTCTTTCAGTCTTTGCGAAGAAATTACCCTAGC
TAGGTAACCGTAACCACTTTTATGACCTATTTCTCTATGCTTCAGGATGA
TTGAGAGGCATTTGTTACCTCAAAACCCAAAGCGATGACTGAAGATGTAT
GCAACCTCGAGGTTTTTCAATGACCAGTTTTCTATGTTTTAGAATGATTT
AGCACTTGAAACCTCAAACTCGAAGTTACCTAACCCGGTATTCTTTTGGT
CTACTGCATAGGAAGACGCGATTTTACACTTATCTGTACACTTTGACCAA
ATCTAAACACTGTCTTTAAAAGCCTTGATGCTGTCAATTTACATTGATAC
ATTGCGTTTTCTTTGTATCATCAAAGTTTGTTTTAGCCTAACTAAATGAT
CGTCTTTTAAAGGCTCCTGGATGACGATTTAACATCACATGCATGGCAAA
CACTCTTCAACATCTTAAGCATACATCAACGGAGAGAAAAAACACTTGAC
ATTTTCAAATACTGATATTATTGTCTGACTTGTTTTAACACTACCTACTA
AACTCGAACGCGACAGGAAATCAAGGTAGAGAGGGTTTTTATAACACAAA
AATGTGCGTGAGTGTTGCTTTGATTTATATGCTTTGATGATGACTGTTGA
CTCAAAAAATctgatgaaaagaaattttgacggCTTTTGATTTGACCCTA
TCTGTGCTTTCTTTCTCCGCCTGGCtgtcaaatatttctttttcttgtca
taggaaaacacttgacaaaaaaTTACTGTCGGTTGTAGTTAGAATGTGCT
TTAAAATGGCGTTGCGCTCCCTGTATACATATCTGACGATATAAGCAAAG
GACATTTTATAAGGaaatttctttgattgtaagttGTATTCTTGGACTGT
TTCTTGGAAAAGGGCTTTAATACAACGATATCAGAATCCTAGCTTCTTGT
TCTTTGCAGGTCAGGGTTTTTTGTAGGTTACTGATATCCTCAAACATTGA
TGATGCTCCTAGTAGGCTTTGTAGAGATCTGTGATTAAGGCAAAACAGCT
TTTGTGGATAGTTTGAAACCTTTTTACGAGCTCTTTGAGTTTTCATATAA
TCCAGTTTGTCTGTATATACAGTTTTTACTCTCATATTGCTTATTCAATA
TTTACTAGTAGTATTATAGTTTCAttcaatattttactttttttaagaat
ttatcgttgcaatttaaattcaaaaatttttttccaccaCAACCATACGT
AGAgaaatatattagaaaaatTATTTGGNTTAACACTACCTACTAAACTC
GAACGCGACAGGAAATCAAGGTAGAGAGGGTTTTTATAACACAAAAATGT
GCGTGAGTGTTGCTTTGATTTATATGCTTTGATGATGACTGTTGACTCAA
AAAATctgatgaaaagaaattttgacggCTTTTGATTTGACCCTATCTGT
GCTTTCTTTCTCCGCCTGGCtgtcaaatatttctttttcttgtcatagga
aaacacttgacaaaaaaTTACTGTCGGTTGTAGTTAGAATGTGCTTTAAA
ATGGCGTTGCGCTCCCTGTATACATATCTGACGATATAAGCAAAGGACAT
TTTATAAGGaaatttctttgattgtaagttGTATTCTTGGACTGTTTCTT
GGAAAAGGGCTTTAATACAACGATATCAGAATCCTAGCTTCTTGTTCTTT
GCAGGTCAGGGTTTTTTGTAGGTTACTGATATCCTCAAACATTGATGATG
CTCCTAGTAGGCTTTGTAGAGATCTGTGATTAAGGCAAAACAGCTTTTGT
GGATAGTTTGAAACCTTTTTACGAGCTCTTTGAGTTTTCATATAATCCAG
TTTGTCTGTATATACAGTTTTTACTCTCATATTGCTTATTCAATATTTAC
TAGTAGTATTATAGTTTCAttcaatattttactttttttaagaatttatc
gttgcaatttaaattcaaaaatttttttccaccaCAACCATACGTAGAga
aatatattagaaaaattatttggttttttgttaattttttcagttttata
CAAACAAAATGTACATAACCTTTTTACTTCACCCTTCTCACGCTCTTACT
ATTGTAACGTGGCGGGTTGGCCGCCCCTTCATTGGTGCAGTCTCGCCCAT
TCATTCCCAAGGaagattttttaatgaatttttctttttattgatgATAT
TATATAGATATTGGAGAGAATGTATTTCTCCTTGTTATTGAATTGGAGGT
ACGATTTATAACAGAAAAAAGGTGCATGTAAAAAGATAACCctgttgaaa
gaaaaatttcctTCCCCCTCATTCTACCACTTTGCGCTTGTGATGTGATA
ATCAG
Run BLAST on NCBI

transcript from alignment at scaffold_36:1263480..1267752+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061629 ID=TCONS_00061629|Name=TCONS_00061629|organism=Clytia hemisphaerica|type=transcript|length=4273bp|location=Sequence derived from alignment at scaffold_36:1263480..1267752+ (Clytia hemisphaerica)
ATGTTTTTGACGTTTTGTGCCGGCTTAGTTTGCGCCAATAGAAGTAACGA
TCATGTTTAGTTTAATTCCCGCAAAGCTCTAGGTATATGATCGTTTTTTT
AATCGGTTTTTCTCGTACATCGATAAACTAAAGGGTATTTATTGACACGA
ACTACGGCAGTGTATTTGACTCGAACCGACTGAATCACAATTTGTATTTG
TCAAACGTCTTTCCTTTGTGGATATTTgagagaatttgaaaaatacacaT
CCTCTTTGCACAGGCTGCCACCAAACACAACACTTACTGACATCAAAATT
GACATGCGGCAGGGTTGTGAAAATGTCGAGTACTATTTATCTTTGTTGAT
TGATGTTGCTTCGCTTGTATATACATACAACATGAACATTGCATTTTTAC
GACAATTGGACAGGTTTACATTTGTTGATATCAATCATCAGTGAGAAGTT
TTATGAGAGGTTTCAGATGTATTTGCGTTCAAAGTTGATgtgttttcatt
tgtttaatGCGAGAATGGTCTTTCAGTCTTTGCGAAGAAATTACCCTAGC
TAGGTAACCGTAACCACTTTTATGACCTATTTCTCTATGCTTCAGGATGA
TTGAGAGGCATTTGTTACCTCAAAACCCAAAGCGATGACTGAAGATGTAT
GCAACCTCGAGGTTTTTCAATGACCAGTTTTCTATGTTTTAGAATGATTT
AGCACTTGAAACCTAAGTTACCTAACCCGACATTGTTTTGGTCTACTGTA
AGAAGACGCGATTTTACACTTGCTGNATAACATGTTCACCTTATTTTTAG
TCCGTTTTAGGTTCACCCCACCCTCGTAATACATTGTACATATCTATTAG
TAGTCATAAACCGGTTTTAaacttttagctttttttatatTAACAGATTC
AAATACACGCGGACTAGGGCCCTTTTAGGCCAATAAATTAGCAACACCAA
GGCTAAAGGGCCGATAAGTTAGAAGTGAGTATTTGTAGCATGCGTAACTT
CGTAGTTTAAACATTAAGTTGATTTCTAAGAGCAAAGATACCGAAAGATA
TGGGCTAAATGCTGTCGAAGCCTCAAAATAACTTCAAAAGGATTGTTTTG
CTTGTTACTCTCCAAAGTGCTATTGAGTGTGAGTCAGGTCTAAGCGCAAG
TCTATTGTGTTCTGAATATAGCTCATATTGATCAAAAACGACATTATAAT
TTGGCACGGGACTCTGTTAAAAGTTCAGTTTTGACTTGTTTTGTATTGAA
CGTATACACGCTTTGTGCATCTCCATCTTGGTATGGAAGTGACGGACCTA
CACACTAGACTTGAGTCATGGCAAGCCTTTACGATGTATTGTAGCTGGTT
GTTTCGACGTTTGTTTAACGTTGAATAGATTCCATGGACGTTTAATGAAC
ATGTTTTTGACGTTTTGTGCCGGCTTAGTTTGCGCCAATAGAAGTAACGA
TCATGTTTAGTTTAATTCCCGCAAAGCTCTAGGTATATGATCGTTTTTTT
AATCGGTTTTTCTCGTACATCGATAAACTAAAGGGTATTTATTGACACGA
ACTATGGCAGTGTATTTGACTCGAACCGACTGAATCACAATTTGTATTTG
TCAAACGTCTTTCCTTTGTGGATATTTGAGAGAATTTGAAAATACACATC
CTCTTTGCACAGCCTGTAGAATGCCACCAAAACACAACACTTACTGACAT
CAAAATTGACATGCGGCAGGGTTGTGAAAATGTCGAGTATTATTTATCTT
TGTTGATTGATGTTGCTTCGCTTGTATATACATTCAACATGAACATTGCA
TTTTTACGACACTTGGACATGTTTACATTTGTTGATATCAATCATCAGTG
AGAAGTTTTATGAGAGGTTTCAGATGTATTTGCGTTCAAAGTTGATGTGT
TTTCATTTCTGTTGTATGCAAGAATGGTCTTTCAGTCTTTGCGAAGAAAT
TACCCTAGCTAGGTAACCGTAACCACTTCTAGGGGTTTTATGACCTATTT
CCCTATGCTTCAGGATGATTGAGAGGCATTTGTTACTTCAAAACCCAAAG
CGATGACTGAAGATGTATGCAACCTTGAGGTTTTTCAATGACCAGTTTTC
TATGTTTTAGAATGATTTAGCACTTGAAACCTCAAACTCGAAGTTACCTA
ACCCGGTATTCTTTTGGTCTACTGCATAGGAAGACGCGATTTTACACTTA
TCTGTACACTTTGACCAAATCTAAACACTGTCTTTAAAAGCCTTGATGCT
GTCAATTTACATTGATACATTGCGTTTTCTTTGTATCATCAAAGTTTGTT
TTAGCCTAACTAAATGATCGTCTTTTAAAGGCTCCTGGATGACGATTTAA
CATCACATGCATGGCAAACACTCTTCAACATCTTAAGCATACATCAACGG
AGAGAAAAAACACTTGACATTTTCAAATACTGATATTATTGTCTGACTTG
TTTTAACACTACCTACTAAACTCGAACGCGACAGGAAATCAAGGTAGAGA
GGGTTTTTATAACACAAAAATGTGCGTGAGTGTTGCTTTGATTTATATGC
TTTGATGATGACTGTTGACTCAAAAAATctgatgaaaagaaattttgacg
gCTTTTGATTTGACCCTATCTGTGCTTTCTTTCTCCGCCTGGCtgtcaaa
tatttctttttcttgtcataggaaaacacttgacaaaaaaTTACTGTCGG
TTGTAGTTAGAATGTGCTTTAAAATGGCGTTGCGCTCCCTGTATACATAT
CTGACGATATAAGCAAAGGACATTTTATAAGGaaatttctttgattgtaa
gttGTATTCTTGGACTGTTTCTTGGAAAAGGGCTTTAATACAACGATATC
AGAATCCTAGCTTCTTGTTCTTTGCAGGTCAGGGTTTTTTGTAGGTTACT
GATATCCTCAAACATTGATGATGCTCCTAGTAGGCTTTGTAGAGATCTGT
GATTAAGGCAAAACAGCTTTTGTGGATAGTTTGAAACCTTTTTACGAGCT
CTTTGAGTTTTCATATAATCCAGTTTGTCTGTATATACAGTTTTTACTCT
CATATTGCTTATTCAATATTTACTAGTAGTATTATAGTTTCAttcaatat
tttactttttttaagaatttatcgttgcaatttaaattcaaaaatttttt
tccaccaCAACCATACGTAGAgaaatatattagaaaaatTATTTGGNTTA
ACACTACCTACTAAACTCGAACGCGACAGGAAATCAAGGTAGAGAGGGTT
TTTATAACACAAAAATGTGCGTGAGTGTTGCTTTGATTTATATGCTTTGA
TGATGACTGTTGACTCAAAAAATctgatgaaaagaaattttgacggCTTT
TGATTTGACCCTATCTGTGCTTTCTTTCTCCGCCTGGCtgtcaaatattt
ctttttcttgtcataggaaaacacttgacaaaaaaTTACTGTCGGTTGTA
GTTAGAATGTGCTTTAAAATGGCGTTGCGCTCCCTGTATACATATCTGAC
GATATAAGCAAAGGACATTTTATAAGGaaatttctttgattgtaagttGT
ATTCTTGGACTGTTTCTTGGAAAAGGGCTTTAATACAACGATATCAGAAT
CCTAGCTTCTTGTTCTTTGCAGGTCAGGGTTTTTTGTAGGTTACTGATAT
CCTCAAACATTGATGATGCTCCTAGTAGGCTTTGTAGAGATCTGTGATTA
AGGCAAAACAGCTTTTGTGGATAGTTTGAAACCTTTTTACGAGCTCTTTG
AGTTTTCATATAATCCAGTTTGTCTGTATATACAGTTTTTACTCTCATAT
TGCTTATTCAATATTTACTAGTAGTATTATAGTTTCAttcaatattttac
tttttttaagaatttatcgttgcaatttaaattcaaaaatttttttccac
caCAACCATACGTAGAgaaatatattagaaaaattatttggttttttgtt
aattttttcagttttataCAAACAAAATGTACATAACCTTTTTACTTCAC
CCTTCTCACGCTCTTACTATTGTAACGTGGCGGGTTGGCCGCCCCTTCAT
TGGTGCAGTCTCGCCCATTCATTCCCAAGGaagattttttaatgaatttt
tctttttattgatgATATTATATAGATATTGGAGAGAATGTATTTCTCCT
TGTTATTGAATTGGAGGTACGATTTATAACAGAAAAAAGGTGCATGTAAA
AAGATAACCctgttgaaagaaaaatttcctTCCCCCTCATTCTACCACTT
TGCGCTTGTGATGTGATAATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038655XLOC_038655Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061629-exon-scaffold_36-1491911889:1263480..1264140TCONS_00061629-exon-scaffold_36-1491911889:1263480..1264140Clytia hemisphaericaexon
TCONS_00061629-exon-scaffold_36-1510915933:1263480..1264140TCONS_00061629-exon-scaffold_36-1510915933:1263480..1264140Clytia hemisphaericaexon
TCONS_00061629-exon-scaffold_36-1575043694:1263480..1264140TCONS_00061629-exon-scaffold_36-1575043694:1263480..1264140Clytia hemisphaericaexon
TCONS_00061629-exon-scaffold_36-1491911889:1265559..1267752TCONS_00061629-exon-scaffold_36-1491911889:1265559..1267752Clytia hemisphaericaexon
TCONS_00061629-exon-scaffold_36-1510915933:1265559..1267752TCONS_00061629-exon-scaffold_36-1510915933:1265559..1267752Clytia hemisphaericaexon
TCONS_00061629-exon-scaffold_36-1575043694:1265559..1267752TCONS_00061629-exon-scaffold_36-1575043694:1265559..1267752Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:1263480..1267752 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0229158	0.0195195	0.0373666	0	0.371625	0.341675	0.578918	0.504059	0.105486	0.0705306	0.0761835	0.169011	0.248614	0.250179	0.190704	0.317845	0.235541	0.330088	0.019265	0.117032	0.43025	0.5819	0.0628459	0.293519	0.192044	0.16884	0.946441	1.45407	0.0553218	0.145845
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061629 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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