TCONS_00061633 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061633
Unique NameTCONS_00061633
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1156

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061633 ID=TCONS_00061633|Name=TCONS_00061633|organism=Clytia hemisphaerica|type=transcript|length=1156bp
AGGTACTTGCAACTTTAATATTTCATTTACCACTCtgaactcgatccaat
ccttatttatacttgtttctattgtctttaggtacGAAAAAACTCGGaat
ggttttagggtggtaaaatggacaaaaaaaatgcccgcgcggtatttggt
ggctacggtcggaAAGGTGTATTTCTTCTAAGATAAATCTGCATTCATAC
GATCATAATCCTTAATCTGACCTATGGGTTATTGCAAAGTCATCAAATCC
TATATTATGTCATATAgaaaatttacccaaaatagTTGTTCCAGGTTGTT
GAGTTGTTACTGGAGCTTGAGTTGTTACTGGAGCTTGAGTTGTTACTGGA
GCTTGAGTTGTTACTGGAAGTCGAGTTGTTACTGGTAGTCGAGTTGTTAA
TGGGAGTCGAGTTGTTAATGGGATTCGAGTTGTTACTGGGAGTCGAGTTG
TTACTGGGAGTCGAGTTGTTACTGGGAGTCGAGTTGTTACTGGAGCTTGA
GTTGTTACTGGAGCTTGAGTTGTTACTGGAGCTTGAGTTGTTACTGGAGC
TTGAGTTGTTACTGGAGCTTGAGTGGTTTCTGGAGCTTGAGTGGTTTCTG
GAGCTTGAGTGGTTTCTGGAGCTTGAGTGGTTTCCGGAGCTTGAGTGGTT
TCCGAAGTTTGATTGGTTTCCGGAGCTTGAGTGGTTTCTGGAGCTCGGGT
TGTTTCAGGAGCTTGGGTTGTTTCAGGAGCTTGGGTTGTTTCGGGGGCTT
GGGTTGTTTCAGGGGCTTGAGTGGTTTCAGGGGCTTGAGTGGTTTCCGGA
GCTTGAGTGGTTTCCGGAGCTTGAGTGGTTTCCGGAGCTTGAGTGGTTTC
CGGAGCTTGAGTGGTTTCTGGAGCTTGGGTTGTTTCAGGAGATCGGGTTG
TTTCAGGAGCTTGGGTTGTTTCGGGGGCTTGAGTGGTTTCGGGGGCTTGG
GTTGTTTCAGGGGCTTGAGTGGTTTCAGGGGCTTGAGTGGTTTCCGGAGC
TTGAGTGGTTTCCGGAGCTTGAGTTGTTTCAGGGGCTTGAGTAGTTTCTG
GGACAGTCGTGGTTTCGGGGGCAGTGGTGGTTTCTGGAGCTTCAGTAGTT
GTCGGAATGGGTGTTGTTTGTGGTGCTGGAGCTTGAGTGGTCGGTGTGTT
ATCTTC
Run BLAST on NCBI

transcript from alignment at scaffold_36:1373512..1374829+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061633 ID=TCONS_00061633|Name=TCONS_00061633|organism=Clytia hemisphaerica|type=transcript|length=1318bp|location=Sequence derived from alignment at scaffold_36:1373512..1374829+ (Clytia hemisphaerica)
AGGTACTTGCAACTTTAATATTTCATTTACCACTCtgaactcgatccaat
ccttatttatacttgtttctattgtctttaggtacGAAAAAACTCGGaat
ggttttagggtggtaaaatggacaaaaaaaatgcccgcgcggtatttggt
ggctacggtcggaAAGGTGTATTTCTTCTAAGATAAATCTGCATTCATAC
GATCATAATCCTTAATCTGACCTATGGGTTATTGCAAAGTCATCAAATCC
TATATTATGTCATATAgaaaatttacccaaaatagTTGTTCCAGGTTGTT
GAGTTGTTACTGGAGCTTGAGTTGTTACTGGAGCTTGAGTTGTTACTGGA
GCTTGAGTTGTTACTGGAAGTCGAGTTGTTACTGGTAGTCGAGTTGTTAA
TGGGAGTCGAGTTGTTAATGGGATTCGAGTTGTTACTGGGAGTCGAGTTG
TTACTGGGAGTCGAGTTGTTACTGGGAGTCGAGTTGTTACTGGAGCTTGA
GTTGTTACTGGAGCTTGAGTTGTTACTGGAGCTTGAGTTGTTACTGGAGC
TTGAGTTGTTACTGGAGCTTGAGTGGTTTCTGGAGCTTGAGTGGTTTCTG
GAGCTTGAGTGGTTTCTGGAGCTTGAGTGGTTTCCGGAGCTTGAGTGGTT
TCCGAAGTTTGATTGGTTTCCGGAGCTTGAGTGGTTTCTGGAGCTCGGGT
TGTTTCAGGAGCTTGGGTTGTTTCAGGAGCTTGGGTTGTTTCGGGGGCTT
GGGTTGTTTCAGGGGCTTGAGTGGTTTCAGGGGCTTGAGTGGTTTCCGGA
GCTTGAGTGGTTTCTGGAGCTTGAGTGGTTTCTGGAGCTTGGGTTGTTTC
AGGAGATTGGGTTGTTTCAGGAGATCGGGTTGTTTCGGGAGCTTGGGTTG
TTTCGGGGGCTTGAGTGGTTTCGGGGGCTTGAGTTGTTTCAGGGGCTTGA
GTGGTTTCAGAGGCTTGAGTGGTTTCCGGAGCTTGAGTGGTTTCCGGAGC
TTGAGTGGTTTCCGGAGCTTGAGTGGTTTCTGGAGCTTGGGTTGTTTCAG
GAGATCGGGTTGTTTCAGGAGCTTGGGTTGTTTCGGGGGCTTGAGTGGTT
TCGGGGGCTTGGGTTGTTTCAGGGGCTTGAGTGGTTTCAGGGGCTTGAGT
GGTTTCCGGAGCTTGAGTGGTTTCCGGAGCTTGAGTTGTTTCAGGGGCTT
GAGTAGTTTCTGGGACAGTCGTGGTTTCGGGGGCAGTGGTGGTTTCTGGA
GCTTCAGTAGTTGTCGGAATGGGTGTTGTTTGTGGTGCTGGAGCTTGAGT
GGTCGGTGTGTTATCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038657XLOC_038657Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061633-exon-scaffold_36-1491911889:1373512..1374311TCONS_00061633-exon-scaffold_36-1491911889:1373512..1374311Clytia hemisphaericaexon
TCONS_00061633-exon-scaffold_36-1510915933:1373512..1374311TCONS_00061633-exon-scaffold_36-1510915933:1373512..1374311Clytia hemisphaericaexon
TCONS_00061633-exon-scaffold_36-1575043694:1373512..1374311TCONS_00061633-exon-scaffold_36-1575043694:1373512..1374311Clytia hemisphaericaexon
TCONS_00061633-exon-scaffold_36-1491911889:1374474..1374829TCONS_00061633-exon-scaffold_36-1491911889:1374474..1374829Clytia hemisphaericaexon
TCONS_00061633-exon-scaffold_36-1510915933:1374474..1374829TCONS_00061633-exon-scaffold_36-1510915933:1374474..1374829Clytia hemisphaericaexon
TCONS_00061633-exon-scaffold_36-1575043694:1374474..1374829TCONS_00061633-exon-scaffold_36-1575043694:1374474..1374829Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:1373512..1374829 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000357525	4.39748	0.0336736	0	5.67966	0	12.2164	7.5011	0	7.40659	2.11482	0.229828	0	0	0	0	0.286348	0.958016	0	0	34.0212	45.5526	11.2512	18.195	111.519	63.0867	5.36746	5.06467	0	4.1421e-09
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061633 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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