TCONS_00061663 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00061663
Unique Name	TCONS_00061663
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1930

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_36:546894..548823-

transcript sequence

>TCONS_00061663 ID=TCONS_00061663|Name=TCONS_00061663|organism=Clytia hemisphaerica|type=transcript|length=1930bp
AAGTCACATGGTATGTAATTATTATTTAAATGTATTTATTGAATATGTTT
CATGactttttagatcaaaagtcGAGTGAGACTCAATTAGATGGAAAGAA
TACCCCAGCAACACTGCCATCACACGCTTTAAAGCCACATGGTATGTAAT
TATTATTTAAATGTATTTATTGAATATCTTTCATGactttttagatcaaa
agtcGAGTGAGACTCCATTAGATGAAAAGAATACCCCAGCAACACAGCCA
TCACACGCTTTAAAGCCACATGGTATGTAATTATTGTTTAAATGTATTTA
TTGAATATCTTTCATGactttttagatcaaaagtcGAGTGAGACTCCATT
AGATGAAAAGAATACCCAGCAACACAGCCATCGCACGCTTTAAAGTCAAT
TGGTATGTAATTATTGTTTAAATGTATTCATTGAATATCTTTCTTGCTGA
ATACAGATTTAAACTAGGTATCTCCTATAATTGTATCCTTCCTTTCgtga
ttattttctttaatgTAACTAATGGAGTATCTTTCATGCGACTTTTTAGA
TCAAATGTCGAGTGAGACTCCATTAGATGAAAAGAATACCCAGCAACACA
GCCATCGCACGCTTTAAAGTCACATGGTATGTAATTATTATTTAAATGTA
tttattgaatatcttttatggACGATGTGATTATTTTTCAACAGGTCAAG
CGCGTCTTTAACGAGGTAAAGGCCATGTCAAAAAGCGATCTCTACATCGA
TCTCTTTACATTTCACTGCAATACAAGAAAAGGGACTTGTTTATTTAGAC
GATATCTACAACCTCGAAGTCTCAACACCGCTTACAGTTATCATTCACGC
CATTTACCCCGGACTCTGTCTTTCGAAGAAGAAACTCGACGCACTCAACG
CAGAAAGATTCCTCGTTGCTGAACATTGGTCAACCGAATCCGGCACCGCG
GCATACGCCTGTGAAAATGCCCTTAAAAACCAACTGCATACGCATAATGT
CCTTCTTATCCGCACAACCCAACACAAGGGGACTTGGCGTGAGAAGACGG
ATAGGAGAACAATTCGTCAATACGTCTTGCAGCACCTCCAGGACATGTTC
TCCAAGGCTGTCGATAGAGGATGTGTCACCTATTCCACACAGCAGCAGGC
GAAGGGATTCTGCTGTAACGGAAAACCAGACGTCACCGGAGAATTACAAG
AGAACGTCCCTGCTGTCCACCCCACTTTCAACCTATCCCTGTTCCTCAAG
ACTGGCACGTCCGCGATTACGAATTGTTTCAACTACGTCCTCAGAAGAAG
AGTTCATGGTAAGGGGCAATTCAAGCGTCTCGCCGTCATGTCCGTTAACC
GCCAGAATGTCATCCGTGAGAGAGTTGGCTTCCCTGACCGAGTTAAGCTC
GATTTCTTCAAGCCCATTGAGACGAAACGTAAACGAGGTTCTGACGAATG
GTTATCCAAGGAGAACTTACGAGAGGGATCAGAGGGAGCTGTTCAATCAA
AAAAAACCCGTCCGACGCCAGATCTTGGAACTCCTGAAAGCGAAGTGCAT
CAGAAACAGTAAGCATTACAATGTTGAACTTTTAACTAATTaacatttac
aatttttagaagGTTGTATTATGCCGTCTGCTCTTTACAATGTAAAAAGA
ATTGCTTTTAATCAGAATTGTTATCGTCCAATTGTACCTTATTTTGAGAG
AACTGTGTATGGAAAAGATTATACCCAGCAACACAGCCATCGCACGCTTT
AAAGTCACATGATATGTAATTATTGTTTAAATGTATTTATATTGAATATC
TTTCATGactttttagatcaaaagtcGAGTGAGACTCCATTAGATGAAAA
GAATACCCAGCAACACAGCCATCGCACGCTTTAAAGTCACATGGTATGTA
ATTATTATTTAAATGTATTTATTGAATATC

Run BLAST on NCBI

transcript from alignment at scaffold_36:546894..548823-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00061663 ID=TCONS_00061663|Name=TCONS_00061663|organism=Clytia hemisphaerica|type=transcript|length=1930bp|location=Sequence derived from alignment at scaffold_36:546894..548823- (Clytia hemisphaerica)
AAGTCACATGGTATGTAATTATTATTTAAATGTATTTATTGAATATGTTT
CATGACTTTTTAGATCAAAAGTCGAGTGAGACTCAATTAGATGGAAAGAA
TACCCCAGCAACACTGCCATCACACGCTTTAAAGCCACATGGTATGTAAT
TATTATTTAAATGTATTTATTGAATATCTTTCATGACTTTTTAGATCAAA
AGTCGAGTGAGACTCCATTAGATGAAAAGAATACCCCAGCAACACAGCCA
TCACACGCTTTAAAGCCACATGGTATGTAATTATTGTTTAAATGTATTTA
TTGAATATCTTTCATGACTTTTTAGATCAAAAGTCGAGTGAGACTCCATT
AGATGAAAAGAATACCCAGCAACACAGCCATCGCACGCTTTAAAGTCAAT
TGGTATGTAATTATTGTTTAAATGTATTCATTGAATATCTTTCTTGCTGA
ATACAGATTTAAACTAGGTATCTCCTATAATTGTATCCTTCCTTTCGTGA
TTATTTTCTTTAATGTAACTAATGGAGTATCTTTCATGCGACTTTTTAGA
TCAAATGTCGAGTGAGACTCCATTAGATGAAAAGAATACCCAGCAACACA
GCCATCGCACGCTTTAAAGTCACATGGTATGTAATTATTATTTAAATGTA
TTTATTGAATATCTTTTATGGACGATGTGATTATTTTTCAACAGGTCAAG
CGCGTCTTTAACGAGGTAAAGGCCATGTCAAAAAGCGATCTCTACATCGA
TCTCTTTACATTTCACTGCAATACAAGAAAAGGGACTTGTTTATTTAGAC
GATATCTACAACCTCGAAGTCTCAACACCGCTTACAGTTATCATTCACGC
CATTTACCCCGGACTCTGTCTTTCGAAGAAGAAACTCGACGCACTCAACG
CAGAAAGATTCCTCGTTGCTGAACATTGGTCAACCGAATCCGGCACCGCG
GCATACGCCTGTGAAAATGCCCTTAAAAACCAACTGCATACGCATAATGT
CCTTCTTATCCGCACAACCCAACACAAGGGGACTTGGCGTGAGAAGACGG
ATAGGAGAACAATTCGTCAATACGTCTTGCAGCACCTCCAGGACATGTTC
TCCAAGGCTGTCGATAGAGGATGTGTCACCTATTCCACACAGCAGCAGGC
GAAGGGATTCTGCTGTAACGGAAAACCAGACGTCACCGGAGAATTACAAG
AGAACGTCCCTGCTGTCCACCCCACTTTCAACCTATCCCTGTTCCTCAAG
ACTGGCACGTCCGCGATTACGAATTGTTTCAACTACGTCCTCAGAAGAAG
AGTTCATGGTAAGGGGCAATTCAAGCGTCTCGCCGTCATGTCCGTTAACC
GCCAGAATGTCATCCGTGAGAGAGTTGGCTTCCCTGACCGAGTTAAGCTC
GATTTCTTCAAGCCCATTGAGACGAAACGTAAACGAGGTTCTGACGAATG
GTTATCCAAGGAGAACTTACGAGAGGGATCAGAGGGAGCTGTTCAATCAA
AAAAAACCCGTCCGACGCCAGATCTTGGAACTCCTGAAAGCGAAGTGCAT
CAGAAACAGTAAGCATTACAATGTTGAACTTTTAACTAATTAACATTTAC
AATTTTTAGAAGGTTGTATTATGCCGTCTGCTCTTTACAATGTAAAAAGA
ATTGCTTTTAATCAGAATTGTTATCGTCCAATTGTACCTTATTTTGAGAG
AACTGTGTATGGAAAAGATTATACCCAGCAACACAGCCATCGCACGCTTT
AAAGTCACATGATATGTAATTATTGTTTAAATGTATTTATATTGAATATC
TTTCATGACTTTTTAGATCAAAAGTCGAGTGAGACTCCATTAGATGAAAA
GAATACCCAGCAACACAGCCATCGCACGCTTTAAAGTCACATGGTATGTA
ATTATTATTTAAATGTATTTATTGAATATC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_038667	XLOC_038667	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00061663-exon-scaffold_36-1575043694:546894..548823	TCONS_00061663-exon-scaffold_36-1575043694:546894..548823	Clytia hemisphaerica	exon
TCONS_00061663-exon-scaffold_36-1510915933:546894..548823	TCONS_00061663-exon-scaffold_36-1510915933:546894..548823	Clytia hemisphaerica	exon
TCONS_00061663-exon-scaffold_36-1491911889:546894..548823	TCONS_00061663-exon-scaffold_36-1491911889:546894..548823	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_36	supercontig	scaffold_36:546894..548823 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0752204	0.120845	0.251002	0.257825	1.52465	0.868673	0.23082	0.46738	0.157267	0	0.0584451	0.16602	0.118624	0.139724	0.173707	0.0487313	0.0855188	0.0364597	0.052162	0.0423138	0.361885	0.417093	0	0.0495903	0.450266	0.642313	0.127076	0.11996	0.0755315	0.0538974

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00061663 vs. Swiss-Prot (Human)

BLAST of TCONS_00061663 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00061663 (transcript) - C. hemisphaerica