|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061671 ID=TCONS_00061671|Name=TCONS_00061671|organism=Clytia hemisphaerica|type=transcript|length=5397bpRun BLAST on NCBI protein sequence of TCONS_00061671-protein >TCONS_00061671-protein ID=TCONS_00061671-protein|Name=TCONS_00061671-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1422bp MAKFAPLLIVLLSLWLVEAQRIKRQTEVTEFLIKGEKGQPGPDGDDGIRGRun BLAST on NCBI transcript from alignment at scaffold_36:821751..836892- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061671 ID=TCONS_00061671|Name=TCONS_00061671|organism=Clytia hemisphaerica|type=transcript|length=15142bp|location=Sequence derived from alignment at scaffold_36:821751..836892- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_36:821751..836892- >TCONS_00061671 ID=TCONS_00061671|Name=TCONS_00061671|organism=Clytia hemisphaerica|type=CDS|length=68304bp|location=Sequence derived from alignment at scaffold_36:821751..836892- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061671 vs. Swiss-Prot (Human)
Match: CO1A1 (Collagen alpha-1(I) chain OS=Homo sapiens GN=COL1A1 PE=1 SV=5) HSP 1 Score: 162.925 bits (411), Expect = 5.440e-40 Identity = 74/233 (31.76%), Postives = 119/233 (51.07%), Query Frame = 3
Query: 3948 KTTEKSDNTFYGGDGSRRHPARTCEDLFKTHENKNTGDYWVDPNEGSNHDATLVFCDKKTFATCVYPKFNKVGEWEWEDMKKKKGD-YQWMAKDFLKQTEIEY------AMDIS-QIKMLNILTTHAQQNVTFNCKNAL---------MKDSILKFKFFNDKTMEYGKRSSAVLIKTIENTCKNTNDNTWHKGVIDFGSASDLFHLPLLDVGAFNVGRKSEQFGFQLGPVCFL 4595
K+ + +GSR++PARTC DL H + +G+YW+DPN+G N DA VFC+ +T TCVYP V + W K K + W + + EY D++ Q+ L +++T A QN+T++CKN++ +K ++L + N+ + S T++ +T W K VI++ + LP++DV +VG ++FGF +GPVCFL
Sbjct: 1236 KSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPSVAQKNWYISKNPKDKRHVWFGESMTDGFQFEYGGQGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALL-LQGSNEIEIRAEGNSRFTYSVTVDGCTSHT--GAWGKTVIEY-KTTKTSRLPIIDVAPLDVGAPDQEFGFDVGPVCFL 1464 The following BLAST results are available for this feature:
BLAST of TCONS_00061671 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.