TCONS_00061673 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061673
Unique NameTCONS_00061673
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length238

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061673 ID=TCONS_00061673|Name=TCONS_00061673|organism=Clytia hemisphaerica|type=transcript|length=238bp
AAACTTCTCCTTGGAATTGAAGACAATTAGATTCAGCTTTATAAATACAA
GCTCCATATCCTCCATAAGCTTTCTCATCGTAGAAAAGACCACCTGGGCA
CGGCATGATGTTTTGTGTACAAAGGTGTTTGTAGGATCGTctgtttttag
catttttacaTCCAACACCGCAGGCTATGTAGTGATCACAGGCTCCATTT
GGATGACGATAATTGCCAGATTTTCCCTTACAAAAGTA
Run BLAST on NCBI

transcript from alignment at scaffold_36:933630..940480-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061673 ID=TCONS_00061673|Name=TCONS_00061673|organism=Clytia hemisphaerica|type=transcript|length=6851bp|location=Sequence derived from alignment at scaffold_36:933630..940480- (Clytia hemisphaerica)
AAACTTCTCCTTGGAATTGAAGACAATTAGATTCAGCTTTATAAATACAA
GCTCCATATCCTCCATAAGCTTTCTCATCGTAGAAAAGACCACCTGGGCA
CGGCATGATGTTTTGTGTACAAAGGTGTTTGTAGGATCGTCTGTTTTTAG
CATTTTTACATCCAACACCGCAGGCTATGTAGTGATCACAGGCTCCATTA
GGATGGCGATAATTGCCAGATTTTCCCCTACAAAATTATGCATCGACTGA
AATGTAAAAAAAAGAATTAAAGTGATGATGAATTTCTCAATAACTCAAAA
AAAAGAAGGAGAATGGTTTTATCAGTTGTTTACGCTGATTTTGGTGTCAT
TCGCGAAATTAAGTCCCAATGAAAATTTGGAAAAGCCTCATCCGCGAAAT
AGTTTTGATGAAAACTCAAAATAATGTCAAGTAACTCCTTTGTATTTGAA
TGTTTAACTATTATCAAAGAAGCGACATGCACAATTTGGTGTAAAAAGGC
ACAAGATCGTCAAAATATAGTACGTAGCGCCATCCACGAAATTTAATTCC
CGAAAATTTATCCCACCATTAAAGCAAAAAATACACTCAAATTGCATAGC
TTTGACACTTTATCAGCTCTCTTCAAGACTACAACTTAAACGTTATTGTC
TTCCCTCAATTCATAATAAAATCCTACTTACCAGCTTCCAAATTGTCTTC
GTATGTGAAAGGATTATGAGCACTGGCTTGCACTTGGATCGTCACTATAA
CATAGAGAGGGAATTAGATATACAAAAAGGCAATTATTCAACCGTATCCA
TAAGAATCTAGGTAGCTTTTTCGATTGGAAACAAATTTTTGTTTCACTCA
AAAAATCCAATGTAAAATGTAAAAAATAGAATTTAAAATCAGCATCTACC
TAACACTTTACATTTTCCATCAGGTATTGTCTAAGCTTCATGGATCAGAA
CACCTTTGTCTCGCAGCCCCGGTGAGAATTTTCTTACAGTGGGAAACATC
AATGGGGATAGACATTCTATTGCTCCTAAATTGAAAATCCAGTGTGGATG
GTTTGGGATTTCAATTATTTTTCAAATGGGTATAAAATCAATTTTCGCTT
TAGGGCTGAATTTGTAGGGTAATTTTCTCACTGGGGATAAAATCTTGATC
AAATTTTTCAGTTTCCAGGGACGTGGGTTCCATAGTAGGTATGTGACACG
GGGGTGTCTTTGGAAACTCTATCAAAGTACTGAGATACTGTTTAAGGCTT
GATAAAGCACTTACCCAAAGCAACGGCTAGAATATAGATTGCCAACATGA
TGCTTGTGAATTAATCTTCCTTCTTCTGTTTGCGTTTTGTTCTTTTTCAC
AAGCTGTGTTGAGCTGTGAGATGATGTCCATCCCTCGCTCCAAAACTTCC
CCCTTTTATACACCAAATTGCTGTGAGGACCAAGGAAATTAACCACTTTT
TACAAAATTTACGACTTCCTCCTTCGTTTATCTTTCTCGTTCAGTCTTTT
ACAAACTTTCACTTTTCATTTTTCACGGATATTTAATTAGCCATCCGGGT
AGAATGTTGATTAGCTTTGCATTTTTCGGTGCGTAGGAAGTCTGAATGCA
GATTTTGCCACTTTCTGTTTACAAACAATAGACAGAAATAGTACCACAAA
TTTTCAGTTTGTTAAGTGTTACTTCTAATAATATGTAGTAGGTAAGCTCG
AAGCGACGAGTTTGGTGAAACAAAACAAGAAACATTAGGGGAATTGTGGA
GGGACCATTTCTTTATATCTCATGCTGCATATGGTTGTTTCTGTTCCTGA
ATGCCTGAATTTGTCTTAACCTGTACAGCAATTGTACCAACGATGCTACT
CCGATCTTCAATTGGGTCACCGTGTATGGAAGAAAAGGTACCTCGAGCAG
CGGCATATCTTCGTACCCTTTTTACCCAAGTACCCCCTCCCCGGTATTGA
GAAACCTTACTTTGATTTTCAAGCAATACCTGTACTAACCTTTTTTTTGA
AATTAAAGCATTGTATTTTCCAATGGTGTTAAGAAATTAGATATATGTCC
AAAGATTAGCCATCAAACTAGAAAAAATGATGGTGATAAGCTCTCCTCAA
ATAAAAAGTGCATCTTTGATATAACATCCCGAAAAATGAGGACGAGGTCT
TAACTCAGGGCTTGGTCTGTTTGGAAATCTGTAAAAGAGTGCTGATGAAG
TCAAGTAAGGATGAAGAAAATTTCAACATGAACAATTAGGGCTTTATTTT
TGGTTCTACCATTTGCTGTACTTTTGTGTCCACGCTAAAGCTCTTACTGG
CGTATTATGTTTAGATTCCAGGTTGCAGATGTTACTTTAGATAAGATCGT
TTACAAGTCTTTCATAAGTACAGACTCTATAAGAAAATAAGGCCAAAATA
TTTAGAACATATTAAGAATACTTTTAGCAGCTTTGTAGCTTTACGGACAC
TAAAACACCCGATTTCTAAGGAAAATGAACAAAAAATGGAGAGAATAAGA
ATATGTTAAGAATATTTTTCAGCTTAAAACTAAAAAAATCAAGAACATCC
AAAGGTTTCATAAATTTAGGATGTTCTTTTAAAAAGTGCGTAGCATCGCA
TCACAGGGTTGTAACCTCTCACTTTCGATATGATCGTCCCATACCTTCGA
TTTTGAATTTTCGCAGTTTCATAGCTGATAGGAAATATTTGTTGGTAATT
TGGCGATTTATATACTTTGTTGATTGTTTCCTTAATTCAAAACAGGGTTA
ATGAACAATATATAGAATGTTGACAGGGCTCGTTACATAGAACATTTGAT
TGGTTTTTAAGTATAATTAAAAGTAATGACACTAAGAAATTAGGATGTTT
TAAGTTGATTAATTGTTCCTATCACTCGCCAGTATAAAAAGCAATTTGTA
GAATTACTGTACTGGGTATTTAATATCATTTCCTGGGTCAAGGTTTCAAG
TAAGTCACTTTTGGTATTTTATAAGAACAATTCATCAGCCTTGCGAGCCA
GGGCGGTTTTTAAACGACTCTGCGTCATAAAGATGAGGAATCGTTCGTAT
CTCCGTCAACGCGTCCAACAGAATCATCAATACCGTGGTTCGAGGGTGAT
TCAAAGGTTCAGTTACCAAAGTCTATGATGGTAATATTCTTAGCATATTC
TGAATCTTCTGCTCTATTACATCATAAATTCTTATAGAGTACATTCTTAT
AAAGCGTGAATAGGGTGTAAAAAACAGTAAGCAGAAAATATTCTCTTACA
TTTCTTTGATGCCTAGCTAGGCAATAAAGATAGCAATCAACCTTTCCAAG
TATTTCCTAAGACTTAAGACTTTTTTAGGAAATTGTGTTAGTATTGTCGG
ATAGGATATTGTATATATGCTGAACTTTTACCTTTATGGACCTGAAACTT
TTCCTTTTATACCCCCTTTTCACTTTTACGGCAATAGGGATACGAAATTT
AGAATAACGAGGCCACAAATTTTCTTAATCTAACCTATTTTTTGGGCAAA
ATTGAGGTACCTCATGCTTTATGCCAATTTCTAGTACTCTACCCGTTATT
TGCCCTAAATTTGCCCCAAAAATGTTTTTTTGAAAATCGGGCACCGTAAC
TTTTGGGTACTGTCATTTTGGATCACTATGCAACAATTTAGAAAAAAAAT
ATCAGGCCAATCCCGAAAAAATCCGTAAATAAATGCTCTAAAACTTCATA
TCTTACTGCCGTTACAGATGGCAAAATGTGCTTCAAAGTAACCGTTGATA
AACTACTGTTTCTTTTTCAAGAACAAACTTTGGAAATTTGAGCTGAAAAC
ACTAGAAAGTGTGTGTAGAAATTTGTGTGTAGTCACTTAAAGACTTTGGT
TATTTTTTTTAACTTGGAAAGCCAGAATTGGAGATATTTCACCAAACCCC
TACTGGAGCGTAAGTTGGTCTACTAATATCGACTTTCACCTTCAAGTTTC
GACACCCTTCTTTAAACATTTGAAGGAAAAAGCAAATGTTGTTCCTGTAT
ACAAAAACAAAGGGGACAAGAGCGTGGTGAAAATTACAGACCAGTGTCTT
CTGCCTATTTTTGGAAAAAATTTTGAAAAATGCATCTTTGACCCCGTCTA
CACCTATTTCGAGAACAATAATCTTTTCACAAATTCCCAGTCTGGTTTCC
GCCAGGGCGACTCTTGTGTGTCTCAGCTGTTATCCATAACACACGACATC
CTGAATGGTTTTGATGTTGATCCACCCCTACTCGTGGAGTATTCCTTGAT
ATTTCCAAAGCTTTTGACAGAGTTTGGCACGATGATTTAATTTTTAAACT
TAAGTCATATGGTGTTTCTGGCTCTCTTCTTTTATCGATCCAGAATTTTC
TTCACGGGAGACGGTAGCAGGTTGTTCTTGATGGTCCAGCTTCCAATTGG
ACGGGAGTCTTGGCCGGTGTACCTCAGGGATCTATCCTCGGACCCCTTTT
TCTATTTACATTAATGACCTCCCTGAAGGAATCACTTCTATGATCAAAAT
TTTTGATGATGACTCATCCTTATTTTCGCTTATCCTAGACCATATTCGCT
GTTCTCAAGAATTGAGCAGTGACATGCAGAAGATAAATAAGTGGGCTCAT
CAGTGGAAAATGTCCTTCAACCCTGATTCTTCTAAACAGGCTGTTGAAGT
GTACTTATTACACGGAGGTTAAATCCACCTAACCCCCCAGAAATTACTTT
CAATAATGCAGCCATCGCACTTTAGGATCGTTAAAAACATCTTGGTCTCA
TACTTGATCAAAAGCTGGCCTTTGACCGTCACCTTGATGAAAAAAATAAA
AAAGCTAATCAAGGTATTGATTCGCAGACTTCGTAAGTTTCTACCCAGGG
ATTCTCCTGTCACTATATAAAAAAGCTATGTTAGACCACACCTAGATTAT
GGAGATATCGTATACGATCGTCCTGGTAATTCTACATTCTCTGAAAAACT
CGAGTCTGTTCAATATGATGCTTGTCTTGCAATTACTGGATGCTTCAGAG
GAACATCCAGAGAAAAAAATTATCTTGAGTTAGGCTTTGAAAGCCTGGCA
GACAGGCGGTTAATTAGAAGACTCGTATTTTTTTATAAAATTACAAAAGG
CTTTGCTCCTGCTTATCTTACGAATATTCTTCCTCCCCAGAGAGGAGAGG
AAGAACGCAATGCAGGGCGAAGGATAAAACCACCACTCGAGGCACCTTTC
TGCAGAACCGAGCGTCATCGTGCCTCTTTCTTTCCTTTTTGCATGAATGA
ATGGAATAACCTCGGAGATCATATACGAAATCTTCCCACTATTAAGTCTT
TTAAGCAAGCAATTCTCCTATTTCTCAGACCCAGTACTAACTCAGTTAAT
TTACAATCGAATGTTTTGATTATGAGATAGAAAACGTTCTATTTATCATA
AAGATAAAAACATTCGAAAAAGTATCAGTAAAAATCCCTTTGTTTGAGAA
ATGTTTTTTTATTCAATGTATTTTCATTTTTTCAAAACCTTTTCCTAATC
TTGTCGCACATGTTTTTACTACATCAGCATCATCGGACACTTCAATCAAA
ACAAAACCTTTAATGGGTAGTTCCAGTTATGAAAAATTTATTTAAAAATT
TTGTATTATGACAATAGAAATATAAAAGATTTTAAAGATTTTAAAAAAAT
CTAAAAGATTCAAAATAAAACATACAAAGTTTTAGAAAGTATTTGGGTTA
AAAAAAATATCGGTTTTGTTAAAAAATTTCAGTAAATCAATTATTAAACT
TAAAATTTGATAACTTGATTAGGTTTGTAGTATTTGTAGAACGATGCGTA
GACGTAAACGCAATGTTTGCCTACATTGTTTCCGACTCCTTGATCAAACA
AATCTTCACCATAATAGACACGGTATTTCTTTCCTTTGATGAAGTAGGTA
TAATAATCATTATGTTCTGCAGTGAAATAGATGAAGGATGATTTGTCATG
GAATCCGTTCAAATAATAGAATCCGTATTTATTGGCGTCGTAAGCAGTGA
ATGGTTCGGGAAATTTAACGTCATGTTTAATGTCGTAGTATGATTTTTTG
ACGTATTTGAAGTTGTCACCTCTGTGCTCGGTGATCCAGACGTTGATTGG
TGGGGCGTGTGGACATCCACCCCAGTAACCAGGCGTGACACCTTTGTAAC
ATCCAACACTTCCAGATTTGGAGACGAGTTTCAATAAGGTGACTTGTCCA
GTACATTGATGAGTGTAAGTGCCACTGTAAGAATAACAAAACTTATATCA
ACTTTTATTTCTGGTGAATGCCATCGCCAAGGTGGTGAAAACGAAATCTT
TTGAAGATTCAGAAATTAATAAGCCTCAAGTTAATACAAAATAATGTTTC
AATGGAAGGCTTGTCGACAAAACATANACTTCTTAAAGAATGATAATTAA
GTGATAAGCGAATAATAGCAGAATTTCTAGATATTGTATTATCACATCAT
TAAAAACATTTTGTTCTTGTTCTCTTGCAAAGGATGGGCATTAAATATTT
CCCTAAACCTGCATAGATATTCTTATTTTCTTAAAATTTGGCTATGATTT
TAAGATGGCCACCAGTTGTGACGGAAACAAGTACTTACTATGACTCTTGA
GTGGATCCATAGCAAACTTCTCCTTGAAATTGAAGACAGTTAGATTCAGC
TTTATAAATACAAGCTCCATATCCTCCATAAGCTTTCTCATCGTAGAAAA
GACCACCAGGACACGGCATGATGTTTTGTGTACAAAGACGTTTGTAGGAT
CGTCTGTTTTTAGCATTTTTACATCCAACACCGCAGGCAATGTAGTGATC
ACAGGCTCCATTTGGATGACGATAATTGCCAGATTTTCCCTTACAAAAGT
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038673XLOC_038673Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061673-exon-scaffold_36-1575043694:940290..940480TCONS_00061673-exon-scaffold_36-1575043694:940290..940480Clytia hemisphaericaexon
TCONS_00061673-exon-scaffold_36-1575043694:933630..933676TCONS_00061673-exon-scaffold_36-1575043694:933630..933676Clytia hemisphaericaexon
TCONS_00061673-exon-scaffold_36-1510915933:940290..940480TCONS_00061673-exon-scaffold_36-1510915933:940290..940480Clytia hemisphaericaexon
TCONS_00061673-exon-scaffold_36-1510915933:933630..933676TCONS_00061673-exon-scaffold_36-1510915933:933630..933676Clytia hemisphaericaexon
TCONS_00061673-exon-scaffold_36-1491911889:940290..940480TCONS_00061673-exon-scaffold_36-1491911889:940290..940480Clytia hemisphaericaexon
TCONS_00061673-exon-scaffold_36-1491911889:933630..933676TCONS_00061673-exon-scaffold_36-1491911889:933630..933676Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:933630..940480 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.758145	0	0	0	0	0	0	0	3.13097	0	13.8195	2.97753	13.7858	4.34951	214.679	42.5595	0	2.46534	5.92446	0	0.306083	1.91793	1.06503	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061673 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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