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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061688 ID=TCONS_00061688|Name=TCONS_00061688|organism=Clytia hemisphaerica|type=transcript|length=4039bp
GCGAGATTTCCACAGCTGATTATCACATCACAAGCGCAAAGTGGTAGAAT
GAGGGGGAaggaaatttttctttcaacagGGTTATCTTTTTACATGCACC
TTTTTTCTGTTATAAATCGTACCTCCAATTCAATAACAAGGAGAAATACA
TTCTCTCCAATATCTATATAATATcatcaataaaaagaaaaattcattaa
aaaatcttCCTTGGGAATGAATGGGCGAGACTGCACCAATGAAGGGGCGG
CCAACCCGCCACGTTACAATAGTAAGAGCGTGAGAAGGGTGAAGTAAAAA
GGTTATGTACATTTTGTTTGtataaaactgaaaaaattaacaaaaaacca
aataatttttctaatatatttcTCTACGTATGGTTGtggtggaaaaaaat
ttttgaatttaaattgcaacgataaattcttaaaaaaagtaaaatattga
aTGAAACTATAATACTACTAGTAAATATTGAATAAGCAATATGAGAGTAA
AAACTGTATATACAGACAAACTGGATTATATGAAAACTCAAAGAGCTCGT
AAAAAGGTTTCAAACTATCCACAAAAGCTGTTTTGCCTTAATCACAGATC
TCTACAAAGCCTACTAGGAGCATCATCAATGTTTGAGGATATCAGTAACC
TACAAAAAACCCTGACCTGCAAAGAACAAGAAGCTAGGATTCTGATATCG
TTGTATTAAAGCCCTTTTCCAAGAAACAGTCCAAGAATACaacttacaat
caaagaaatttCCTTATAAAATGTCCTTTGCTTATATCGTCAGATATGTA
TACAGGGAGCGCAACGCCATTTTAAAGCACATTCTAACTACAACCGACAG
TAAttttttgtcaagtgttttcctatgacaagaaaaagaaatatttgaca
GCCAGGCGGAGAAAGAAAGCACAGATAGGGTCAAATCAAAAGccgtcaaa
atttcttttcatcagATTTTTTGAGTCAACAGTCATCATCAAAGCATATA
AATCAAAGCAACACTCACGCACATTTTTGTGTTATAAAAACCCTCTCTAC
CTTGATTTCCTGTCGCGTTCGAGTTTAGTAGGTAGTGTTAANCCAAATAa
tttttctaatatatttcTCTACGTATGGTTGtggtggaaaaaaatttttg
aatttaaattgcaacgataaattcttaaaaaaagtaaaatattgaaTGAA
ACTATAATACTACTAGTAAATATTGAATAAGCAATATGAGAGTAAAAACT
GTATATACAGACAAACTGGATTATATGAAAACTCAAAGAGCTCGTAAAAA
GGTTTCAAACTATCCACAAAAGCTGTTTTGCCTTAATCACAGATCTCTAC
AAAGCCTACTAGGAGCATCATCAATGTTTGAGGATATCAGTAACCTACAA
AAAACCCTGACCTGCAAAGAACAAGAAGCTAGGATTCTGATATCGTTGTA
TTAAAGCCCTTTTCCAAGAAACAGTCCAAGAATACaacttacaatcaaag
aaatttCCTTATAAAATGTCCTTTGCTTATATCGTCAGATATGTATACAG
GGAGCGCAACGCCATTTTAAAGCACATTCTAACTACAACCGACAGTAAtt
ttttgtcaagtgttttcctatgacaagaaaaagaaatatttgacaGCCAG
GCGGAGAAAGAAAGCACAGATAGGGTCAAATCAAAAGccgtcaaaatttc
ttttcatcagATTTTTTGAGTCAACAGTCATCATCAAAGCATATAAATCA
AAGCAACACTCACGCACATTTTTGTGTTATAAAAACCCTCTCTACCTTGA
TTTCCTGTCGCGTTCGAGTTTAGTAGGTAGTGTTAAAACAAGTCAGACAA
TAATATCAGTATTTGAAAATGTCAAGTGTTTTTTCTCTCCGTTGATGTAT
GCTTAAGATGTTGAAGAGTGTTTGCCATGCATGTGATGTTAAATCGTCAT
CCAGGAGCCTTTAAAAGACGATCATTTAGTTAGGCTAAAACAAACTTTGA
TGATACAAAGAAAACGCAATGTATCAATGTAAATTGACAGCATCAAGGCT
TTTAAAGACAGTGTTTAGATTTGGTCAAAGTGTACAGATAAGTGTAAAAT
CGCGTCTTCCTATGCAGTAGACCAAAAGAATACCGGGTTAGGTAACTTCG
AGTTTGAGGTTTCAAGTGCTAAATCATTCTAAAACATAGAAAACTGGTCA
TTGAAAAACCTCAAGGTTGCATACATCTTCAGTCATCGCTTTGGGTTTTG
AAGTAACAAATGCCTCTCAATCATCCTGAAGCATAGGGAAATAGTGGTTA
CGGTTACCTAGCTAGGGTAATTTCTTCGCAAAGACTGAAAGACCATTCTC
GCattaaacaaatgaaaacacATCAACTTTGAACGCAAATACATCTGAAA
CCTCTCATAAAACTTCTCACTGATGATTGATATCAACAAATGTAAACCTG
TCCAATTGTCGTAAAAATGCAATGTTCATGTTGTATGTATATACAAGCGA
AGCAACATCAATCAACAAAGATAAATAGTACTCGACATTTTCACAACCCT
GCCGCATGTCAATTTTGATGTCAGTAAGTGTTGTGTTTGGTGGCAGCCTG
TGCAAAGAGGAtgtgtatttttcaaattctctcAAATATCCACAAAGGAA
AGACGTTTGACAAATACAAATTGTGATTCAGTCGGTTCGAGTCAAATACA
CTGCCGTAGTTCGTGTCAATAAATACCCTTTAGTTTATCGATGTACGAGA
AAAACCGATTAAAAAAACGATCATATACCTAGAGCTTTGCGGGAATTAAA
CTAAACATGATCGTTACTTCTATTGGCGCAAACTAAGCCGGCACAAAACG
TCAAAAACATGTTCATTAAACGTTCATGGCATCTATTCAACGTTAAACGA
ACGTCGAAACAACCAGCTACAATACATCGTAAAGGCTTGCCATGACTCAA
GTCTAGTGTGTAGGTCCGTCACTTCCATACCAAGATGGAGATGCACAAAG
CGTGTATACGTTCAATACAAAACAAGTCAAAACTGAACTTTTAACAGAGT
CCCGTGCCAAATTATAATGTCGTTTTTGATCAATATGAGCTATATTCAGA
ACACAATAGACTTGCGCTTAGACCTGACTCACACTCAATAGCACTTTGGA
GAGTAACAAGCAAAACAATCCTTTTGAAGTTATTTTGAGGCTTCGACAGC
ATTTAGCCCATATCTTTCGGTATCTTTGCTCTTAGAAATCAACTTAATGT
TTAAACTACGAAGTTACGCATGCTACAAATACTCACTTCTAACTTATCGG
CCCTTTAGCCTTGGTGTTGCTAATTTATTGGCCTAAAAGGGCCCTAGTCC
GCGTGTATTTGAATCTGTTAatataaaaaaagctaaaagttTAAAACCGG
TTTATGACTACTAATAGATATGTACAATGTATTACGAGGGTGGGGTGAAC
CTAAAACGGACTAAAAATAAGGTGAACAtgttatttcaataaaaaagtgT
TCACGGAAGACACACCAGTGGGTATATTATCTCCGTCAAAAGCATGTCCG
CGTGTATCATCAACTGAAATCCATggattgttgtttttctttttaacaaa
tgtttgtttttgtacgggcgaataaaaacttcttttattTACCCGGCAGT
AACAATaagttgttttgaaaagagacaTTTCTTCCATTTTTATCCGCCAT
TACCAAAATAATGCCCATGTTTGTCCTTGTCATCCCCTTAGGATTTACTG
ACAACAGTGCGTCACTTTGCATTACGTCATCACCAATGGTGTATTCTGCA
GACCAGATCGTCGTAAATAACTGCCAAAGTCAGACAAACGTGGTGAACCA
GCCTTATTaaggaacaaaataaaacatattCGGTCAGTAAATTTAAACTC
ACGACTCCAATCTGCGACGGTTGATCAAGGGGAGGTGATCGGATAGCAGG
GTATAAACTCAGGACCAGACGGGTCTTTAATTTTCATCCATCGCCATCGG
CTCCTCTTGTCGGCTGGCAGGGCTTTCCTCTTTCTTTTC Run BLAST on NCBI transcript from alignment at scaffold_36:1262301..1267767- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061688 ID=TCONS_00061688|Name=TCONS_00061688|organism=Clytia hemisphaerica|type=transcript|length=5467bp|location=Sequence derived from alignment at scaffold_36:1262301..1267767- (Clytia hemisphaerica)
GCGAGATTTCCACAGCTGATTATCACATCACAAGCGCAAAGTGGTAGAAT
GAGGGGGAAGGAAATTTTTCTTTCAACAGGGTTATCTTTTTACATGCACC
TTTTTTCTGTTATAAATCGTACCTCCAATTCAATAACAAGGAGAAATACA
TTCTCTCCAATATCTATATAATATCATCAATAAAAAGAAAAATTCATTAA
AAAATCTTCCTTGGGAATGAATGGGCGAGACTGCACCAATGAAGGGGCGG
CCAACCCGCCACGTTACAATAGTAAGAGCGTGAGAAGGGTGAAGTAAAAA
GGTTATGTACATTTTGTTTGTATAAAACTGAAAAAATTAACAAAAAACCA
AATAATTTTTCTAATATATTTCTCTACGTATGGTTGTGGTGGAAAAAAAT
TTTTGAATTTAAATTGCAACGATAAATTCTTAAAAAAAGTAAAATATTGA
ATGAAACTATAATACTACTAGTAAATATTGAATAAGCAATATGAGAGTAA
AAACTGTATATACAGACAAACTGGATTATATGAAAACTCAAAGAGCTCGT
AAAAAGGTTTCAAACTATCCACAAAAGCTGTTTTGCCTTAATCACAGATC
TCTACAAAGCCTACTAGGAGCATCATCAATGTTTGAGGATATCAGTAACC
TACAAAAAACCCTGACCTGCAAAGAACAAGAAGCTAGGATTCTGATATCG
TTGTATTAAAGCCCTTTTCCAAGAAACAGTCCAAGAATACAACTTACAAT
CAAAGAAATTTCCTTATAAAATGTCCTTTGCTTATATCGTCAGATATGTA
TACAGGGAGCGCAACGCCATTTTAAAGCACATTCTAACTACAACCGACAG
TAATTTTTTGTCAAGTGTTTTCCTATGACAAGAAAAAGAAATATTTGACA
GCCAGGCGGAGAAAGAAAGCACAGATAGGGTCAAATCAAAAGCCGTCAAA
ATTTCTTTTCATCAGATTTTTTGAGTCAACAGTCATCATCAAAGCATATA
AATCAAAGCAACACTCACGCACATTTTTGTGTTATAAAAACCCTCTCTAC
CTTGATTTCCTGTCGCGTTCGAGTTTAGTAGGTAGTGTTAANCCAAATAA
TTTTTCTAATATATTTCTCTACGTATGGTTGTGGTGGAAAAAAATTTTTG
AATTTAAATTGCAACGATAAATTCTTAAAAAAAGTAAAATATTGAATGAA
ACTATAATACTACTAGTAAATATTGAATAAGCAATATGAGAGTAAAAACT
GTATATACAGACAAACTGGATTATATGAAAACTCAAAGAGCTCGTAAAAA
GGTTTCAAACTATCCACAAAAGCTGTTTTGCCTTAATCACAGATCTCTAC
AAAGCCTACTAGGAGCATCATCAATGTTTGAGGATATCAGTAACCTACAA
AAAACCCTGACCTGCAAAGAACAAGAAGCTAGGATTCTGATATCGTTGTA
TTAAAGCCCTTTTCCAAGAAACAGTCCAAGAATACAACTTACAATCAAAG
AAATTTCCTTATAAAATGTCCTTTGCTTATATCGTCAGATATGTATACAG
GGAGCGCAACGCCATTTTAAAGCACATTCTAACTACAACCGACAGTAATT
TTTTGTCAAGTGTTTTCCTATGACAAGAAAAAGAAATATTTGACAGCCAG
GCGGAGAAAGAAAGCACAGATAGGGTCAAATCAAAAGCCGTCAAAATTTC
TTTTCATCAGATTTTTTGAGTCAACAGTCATCATCAAAGCATATAAATCA
AAGCAACACTCACGCACATTTTTGTGTTATAAAAACCCTCTCTACCTTGA
TTTCCTGTCGCGTTCGAGTTTAGTAGGTAGTGTTAAAACAAGTCAGACAA
TAATATCAGTATTTGAAAATGTCAAGTGTTTTTTCTCTCCGTTGATGTAT
GCTTAAGATGTTGAAGAGTGTTTGCCATGCATGTGATGTTAAATCGTCAT
CCAGGAGCCTTTAAAAGACGATCATTTAGTTAGGCTAAAACAAACTTTGA
TGATACAAAGAAAACGCAATGTATCAATGTAAATTGACAGCATCAAGGCT
TTTAAAGACAGTGTTTAGATTTGGTCAAAGTGTACAGATAAGTGTAAAAT
CGCGTCTTCCTATGCAGTAGACCAAAAGAATACCGGGTTAGGTAACTTCG
AGTTTGAGGTTTCAAGTGCTAAATCATTCTAAAACATAGAAAACTGGTCA
TTGAAAAACCTCAAGGTTGCATACATCTTCAGTCATCGCTTTGGGTTTTG
AAGTAACAAATGCCTCTCAATCATCCTGAAGCATAGGGAAATAGGTCATA
AAACCCCTAGAAGTGGTTACGGTTACCTAGCTAGGGTAATTTCTTCGCAA
AGACTGAAAGACCATTCTTGCATACAACAGAAATGAAAACACATCAACTT
TGAACGCAAATACATCTGAAACCTCTCATAAAACTTCTCACTGATGATTG
ATATCAACAAATGTAAACATGTCCAAGTGTCGTAAAAATGCAATGTTCAT
GTTGAATGTATATACAAGCGAAGCAACATCAATCAACAAAGATAAATAAT
ACTCGACATTTTCACAACCCTGCCGCATGTCAATTTTGATGTCAGTAAGT
GTTGTGTTTTGGTGGCATTCTACAGGCTGTGCAAAGAGGATGTGTATTTT
CAAATTCTCTCAAATATCCACAAAGGAAAGACGTTTGACAAATACAAATT
GTGATTCAGTCGGTTCGAGTCAAATACACTGCCATAGTTCGTGTCAATAA
ATACCCTTTAGTTTATCGATGTACGAGAAAAACCGATTAAAAAAACGATC
ATATACCTAGAGCTTTGCGGGAATTAAACTAAACATGATCGTTACTTCTA
TTGGCGCAAACTAAGCCGGCACAAAACGTCAAAAACATGTTCATTAAACG
TCCATGGAATCTATTCAACGTTAAACAAACGTCGAAACAACCAGCTACAA
TACATCGTAAAGGCTTGCCATGACTCAAGTCTAGTGTGTAGGTCCGTCAC
TTCCATACCAAGATGGAGATGCACAAAGCGTGTATACGTTCAATACAAAA
CAAGTCAAAACTGAACTTTTAACAGAGTCCCGTGCCAAATTATAATGTCG
TTTTTGATCAATATGAGCTATATTCAGAACACAATAGACTTGCGCTTAGA
CCTGACTCACACTCAATAGCACTTTGGAGAGTAACAAGCAAAACAATCCT
TTTGAAGTTATTTTGAGGCTTCGACAGCATTTAGCCCATATCTTTCGGTA
TCTTTGCTCTTAGAAATCAACTTAATGTTTAAACTACGAAGTTACGCATG
CTACAAATACTCACTTCTAACTTATCGGCCCTTTAGCCTTGGTGTTGCTA
ATTTATTGGCCTAAAAGGGCCCTAGTCCGCGTGTATTTGAATCTGTTAAT
ATAAAAAAAGCTAAAAGTTTAAAACCGGTTTATGACTACTAATAGATATG
TACAATGTATTACGAGGGTGGGGTGAACCTAAAACGGACTAAAAATAAGG
TGAACATGTTATNCAGCAAGTGTAAAATCGCGTCTTCTTACAGTAGACCA
AAACAATGTCGGGTTAGGTAACTTAGGTTTCAAGTGCTAAATCATTCTAA
AACATAGAAAACTGGTCATTGAAAAACCTCGAGGTTGCATACATCTTCAG
TCATCGCTTTGGGTTTTGAGGTAACAAATGCCTCTCAATCATCCTGAAGC
ATAGAGAAATAGGTCATAAAAGTGGTTACGGTTACCTAGCTAGGGTAATT
TCTTCGCAAAGACTGAAAGACCATTCTCGCATTAAACAAATGAAAACACA
TCAACTTTGAACGCAAATACATCTGAAACCTCTCATAAAACTTCTCACTG
ATGATTGATATCAACAAATGTAAACCTGTCCAATTGTCGTAAAAATGCAA
TGTTCATGTTGTATGTATATACAAGCGAAGCAACATCAATCAACAAAGAT
AAATAGTACTCGACATTTTCACAACCCTGCCGCATGTCAATTTTGATGTC
AGTAAGTGTTGTGTTTGGTGGCAGCCTGTGCAAAGAGGATGTGTATTTTT
CAAATTCTCTCAAATATCCACAAAGGAAAGACGTTTGACAAATACAAATT
GTGATTCAGTCGGTTCGAGTCAAATACACTGCCGTAGTTCGTGTCAATAA
ATACCCTTTAGTTTATCGATGTACGAGAAAAACCGATTAAAAAAACGATC
ATATACCTAGAGCTTTGCGGGAATTAAACTAAACATGATCGTTACTTCTA
TTGGCGCAAACTAAGCCGGCACAAAACGTCAAAAACATGTTCATTAAACG
TTCATGGCATCTATTCAACGTTAAACGAACGTCGAAACAACCAGCTACAA
TACATCGTAAAGGCTTGCCATGACTCAAGTCTAGTGTGTAGGTCCGTCAC
TTCCATACCAAGATGGAGATGCACAAAGCGTGTATACGTTCAATACAAAA
CAAGTCAAAACTGAACTTTTAACAGAGTCCCGTGCCAAATTATAATGTCG
TTTTTGATCAATATGAGCTATATTCAGAACACAATAGACTTGCGCTTAGA
CCTGACTCACACTCAATAGCACTTTGGAGAGTAACAAGCAAAACAATCCT
TTTGAAGTTATTTTGAGGCTTCGACAGCATTTAGCCCATATCTTTCGGTA
TCTTTGCTCTTAGAAATCAACTTAATGTTTAAACTACGAAGTTACGCATG
CTACAAATACTCACTTCTAACTTATCGGCCCTTTAGCCTTGGTGTTGCTA
ATTTATTGGCCTAAAAGGGCCCTAGTCCGCGTGTATTTGAATCTGTTAAT
ATAAAAAAAGCTAAAAGTTTAAAACCGGTTTATGACTACTAATAGATATG
TACAATGTATTACGAGGGTGGGGTGAACCTAAAACGGACTAAAAATAAGG
TGAACATGTTATTTCAATAAAAAAGTGTTCACGGAAGACACACCAGTGGG
TATATTATCTCCGTCAAAAGCATGTCCGCGTGTATCATCAACTGAAATCC
ATGGATTGTTGTTTTTCTTTTTAACAAATGTTTGTTTTTGTACGGGCGAA
TAAAAACTTCTTTTATTTACCCGGCAGTAACAATAAGTTGTTTTGAAAAG
AGACATTTCTTCCATTTTTATCCGCCATTACCAAAATAATGCCCATGTTT
GTCCTTGTCATCCCCTTAGGATTTACTGACAACAGTGCGTCACTTTGCAT
TACGTCATCACCAATGGTGTATTCTGCAGACCAGATCGTCGTAAATAACT
GCCAAAGTCAGACAAACGTGGTGAACCAGCCTTATTAAGGAACAAAATAA
AACATATTCGGTCAGTAAATTTAAACTCACGACTCCAATCTGCGACGGTT
GATCAAGGGGAGGTGATCGGATAGCAGGGTATAAACTCAGGACCAGACGG
GTCTTTAATTTTCATCCATCGCCATCGGCTCCTCTTGTCGGCTGGCAGGG
CTTTCCTCTTTCTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061688-exon-scaffold_36-1575043694:1265474..1267767 | TCONS_00061688-exon-scaffold_36-1575043694:1265474..1267767 | Clytia hemisphaerica | exon |
| TCONS_00061688-exon-scaffold_36-1575043694:1262301..1264045 | TCONS_00061688-exon-scaffold_36-1575043694:1262301..1264045 | Clytia hemisphaerica | exon |
| TCONS_00061688-exon-scaffold_36-1510915933:1265474..1267767 | TCONS_00061688-exon-scaffold_36-1510915933:1265474..1267767 | Clytia hemisphaerica | exon |
| TCONS_00061688-exon-scaffold_36-1510915933:1262301..1264045 | TCONS_00061688-exon-scaffold_36-1510915933:1262301..1264045 | Clytia hemisphaerica | exon |
| TCONS_00061688-exon-scaffold_36-1491911889:1265474..1267767 | TCONS_00061688-exon-scaffold_36-1491911889:1265474..1267767 | Clytia hemisphaerica | exon |
| TCONS_00061688-exon-scaffold_36-1491911889:1262301..1264045 | TCONS_00061688-exon-scaffold_36-1491911889:1262301..1264045 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:1262301..1267767 - |
Blast
The following BLAST results are available for this feature:
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