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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061690 ID=TCONS_00061690|Name=TCONS_00061690|organism=Clytia hemisphaerica|type=transcript|length=2028bp
ATGGAATCAAAACTGGTCAGAACCATTTCATTGCTGGTCATTTCAATCTT
TTGCGTGATTACTTCAATATCGGCACTGGCTATAAACGAAAGCGTTGGGC
AAACAGTTAAAGACAGTTCAATTCGAACTAGAATTCCAACTGAGATACTG
ATAACAACTTCAATGATGTCAAGCAGTAGCCAGACAATATCAGATTTACC
ATATTCGGCTGATTCCAATACCATGGAGGATTCTTTGACGTCTTCATCCC
TATTCACATTATTCACAACCTCTCAATATCACCAAACAGTTTCACTTGAC
TCCTCGACGACCTCGACAGATCCATCACCAACAACTAACACATGGTCAAT
TCAACCATCAGTATACGAAATGCAAGTCCAACCATCGTCCAATATTAAAA
CCAAAGGACTACATGAACAAACTGTGCATCCAGGTTACCATGATGCGATA
GGCCTTACAACAAAATCAATCGCTACAGAAGGCATTTTGTCTGCGTCTAT
AACCAGCCAGTTTAGTACTTTGACCAGAACTACAACAGAGCATTCTAGAG
CTACAGGAGATTCTATTAGAAATATGTCAATGTCACTCAGAACTACAACA
ATGACGTCTCTTAGAACTAAAATAGATTCTGGTGAATCTTCAACAGTTTC
TTCTGGAGTTACAACAGATTCTCTTGGAACTAAAACAGAGTATTTTGAAA
CTGCAACATTTTCTCCTGGTACTACATCAAAACCACCCTGGACCTCAACA
GATTCTCCTAAAACGGCAACAAATTCTCCTGGAGGTACAACAGAGTTTTC
AGAAACTACAACGTCGTCTTTTGGATCTAAAACTGAGTATCCTGAAACTG
CAACATTTTCTTATGGAACTACAACAGAGTCTTCTAGGACTGTAACAGAG
TCTCTCAGAACTACAACAGAGTCTCCTAGAACTACAACAGAGTCTCCTAG
AACTACAACAGAGTCTCCTGGAACTACAACAGAGTCTCCTGGAGCTGCAA
CAGAGCCTCCTGAAACTACAGCAGAGCCTCCTGGAACTTCAGCAGAGCCT
CCTGGAACTACAACAAAGTCTCTTGGAGCTGCAACAGAGAATCCTGGAAC
TACAACAGAATTTCCAAAAACTACAACGGATTCTATTAAAACCACAAAAG
AGCTTCTTGGAACTAAGAAAAATGCTCCTGAAACTAAAACATATAGCCTC
GGAACTACAGCACAATCCGGAAGTAGTGTCAAGACAACAGAGTCTACTGG
AACTAGTGCAATGGAAATTGAAACATCCACTACAACAAACCTTCCCACTA
CATCTTCAGCCTCATCTACAATTGAAATTGATAATACAACAAGACCAAAG
GcaactgaaaattcaaaattccaaTCACATTCATCAACAAAATCTGTAGT
GGTTTCTACCACTAAACAAATAATATCTTATAACAACAGTAATAACCAAA
ACAAAACAGTGACAACAACACCAACAACTAAACTTAATCCCGAACCGGAG
AATAAACTTCCGACCACACCTATGGatgcttatgatttttttcttcttca
agtaAAACTTTTCAGAAATGAATCACAGAACTGTACAGTGTTTGTGAGTA
ATTTTACGGGCAATCAAACCTTCTTCAATGCCACGTGGTCAATGTGTTAT
GAACCTCCATCAGAACCTGAGCCACCGCAATGGTACGAAGATCCACAGAT
CTACTATTATGGTGGCGGTGGCATTATCTTCCTTATATTTCTCTTCGCTA
TGAAAAGTCTATGCGCATATTGCAGTAAGTACAGCAGTGATTACTTGTTG
CCACGCTGGAAGCTCCAGAGACGCAAGAGAGGACAGAAAGTTCGTGAATT
TTGGTGTTTACAACATATTGTGTCTGTCGAAGAACTTCATAAAAAACCAA
AAACCTTTAAAGTGCGAGTTGATAGGACAATTCCGTAAGAATTGTTGCTT
GAGATTGTCTTTTATATTATGAGAGGAATATcagttttttatatttgttc
acGCAGTTAAAATATGAAATTACGTCAA Run BLAST on NCBI transcript from alignment at scaffold_36:1336801..1341472- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061690 ID=TCONS_00061690|Name=TCONS_00061690|organism=Clytia hemisphaerica|type=transcript|length=4672bp|location=Sequence derived from alignment at scaffold_36:1336801..1341472- (Clytia hemisphaerica)
ATGGAATCAAAACTGGTCAGAACCATTTCATTGCTGGTCATTTCAATCTT
TTGCGTGATTACTTCAATATCGGCACTGGCTATAAACGAAAGCGTTGGGC
AAACAGTTAAAGACAGTTCAATTCGAACTAGAATTCCAACTGAGATACTG
ATAACAACTTCAATGATGTCAAGCAGTAGCCAGACAATATCAGATTTACC
ATATTCGGCTGATTCCAATACCATGGAGGATTCTTTGACGTCTTCATCCC
TATTCACATTATTCACAACCTCTCAATATCACCAAACAGTTTCACTTGAC
TCCTCGACGACCTCGACAGATCCATCACCAACAACTAACACATGGTCAAT
TCAACCATCAGTATACGAAATGCAAGTCCAACCATCGTCCAATATTAAAA
CCAAAGGACTACATGAACAAACTGTGCATCCAGGTTACCATGATGCGATA
GGCCTTACAACAAAATCAATCGCTACAGAAGGCATTTTGTCTGCGTCTAT
AACCAGCCAGTTTAGTACTTTGACCAGAACTACAACAGAGCATTCTAGAG
CTACAGGAGATTCTATTAGAAATATGTCAATGTCACTCAGAACTACAACA
ATGACGTCTCTTAGAACTAAAATAGATTCTGGTGAATCTTCAACAGTTTC
TTCTGGAGTTACAACAGATTCTCTTGGAACTAAAACAGAGTATTTTGAAA
CTGCAACATTTTCTCCTGGTACTACATCAAAACCACCCTGGACCTCAACA
GATTCTCCTAAAACGGCAACAAATTCTCCTGGAGGTACAACAGAGTTTTC
AGAAACTACAACGTCGTCTTTTGGATCTAAAACTGAGTATCCTGAAACTG
CAACATTTTCTTATGGAACTACAACAGAGTCTTCTAGGACTGTAACAGAG
TCTCTCAGAACTACAACAGAGTCTCCTAGAACTACAACAGAGTCTCCTAG
AACTACAACAGAGTCTCCTGGAACTACAACAGAGTCTCCTGGAGCTGCAA
CAGAGCCTCCTGAAACTACAGCAGAGCCTCCTGGAACTTCAGCAGAGCCT
CCTGGAACTACAACAAAGTCTCTTGGAGCTGCAACAGAGAATCCTGGAAC
TACAACAGAATTTCCAAAAACTACAACGGATTCTATTAAAACCACAAAAG
AGCTTCTTGGAACTAAGAAAAATGCTCCTGAAACTAAAACATATAGCCTC
GGAACTACAGCACAATCCGGAAGTAGTGTCAAGACAACAGAGTCTACTGG
AACTAGTGCAATGGAAATTGAAACATCCACTACAACAAACCTTCCCACTA
CATCTTCAGCCTCATCTACAATTGAAATTGATAATACAACAAGACCAAAG
GCAACTGAAAATTCAAAATTCCAATCACATTCATCAACAAAATCTGTAGT
GGTTTCTACCACTAAACAAATAATATCTTATAACAACAGTAATAACCAAA
ACAAAACAGTGACAACAACACCAACAACTAAACTTAATCCCGAACCGGAG
AATAAACTTCCGACCACACCTATGGATGCTTATGATTTTTTTCTTCTTCA
AGTAAAACTTTTCAGAAATGAATCACAGAACTGTACAGTGTTTGTGAGTA
ATTTTACGGGCAATCAAACCTTCTTCAATGCCACGTGGTCAATGTGTTAT
GAACCTCCATCAGGTAAGATTTACGTAAATAGCAACCACCCCTTCTCACA
AACCCGGTGGGATTTTATCCACAGATTTATAAAGCCCGAAGGGCTAGATG
TCGTGCTTTAAGCTGTTCCAAGTAAAAAATAATTGAATATCGCAAAAAAA
AAATTGCTGCTTTTGCTTTCGAAAACCCGTGGAGCTTCTTATGGGTCATC
AAGCGCTGAAGTTCTATTGTAATCTCACGTGACTTAGGTTGAATTTCCTA
CTTAATCTTGGCACACTTTCAAACCAAAGCACGTCATCTAGCGCCTCGGA
CTTTATAAATCTATGGTTTTATCACCCCGCAGTTTGGGTAAAAATAATAA
CGGACAAAAACTTGATGGGAATTGGTATTCCAATGTTTTTTAATGGCTTG
GGATTTGAATTCAATTGTTTTCTAGCCAGAAAATTCAGAATAGCCGAAAA
GAATAGCACAATATTTTGCAGTGAGGATTTGCTTATCTGATTATTTTCAG
CGGGGACTAAAATTGGTGTATAATTTTCCATCGGAGACGATATTTTGGCC
AATTTTTCCAGTAGGAAAAGTTCCCAGGGAGTCCGTGAGAAGGGAGTGTA
TAATAACGACTAAAACTTATGCTGAAGGCAAATGATAAGTAATCAGTGTA
ACCATACCGTGAAAACCACAGGTCGAAATCGTATATCGACGCTGTGCCGA
CCAATTCAGATTCTATTCAGCGCACAATCAACGGAGAGAAAAGTAACCAT
GACGACCATCCAAGATCTTGGATGAAGTTCAAAGTTGATATTCTTATTCC
CGTCGTTGGAAACACAGCTCAAAAATGTCATCGATGCTTTTTAAAAAGAG
TCATTGATAGAGAATCAGGGTAGTGTAACCAGTGATCAGTTGATATAAAG
ATAGACTCCGTGTGGTGTCATCTTCACCCACGATCAGCCATTTTTCTAAG
AAATGGCAGAAAGAATATGTACAGGATGTCTTACTAACACCTTGCTTAGG
TTCCTGTGTTTGACCTGCGCATAGTTTTCTGTTTGTTGTTTTATTTTGTG
GGTGAAAATTAGTGAGTTAGAAACAGGTAGATTGCTTGAGATTTGGTTGA
AGATAGTGCCTAATTCAGCTAAATCAGTCTACTGTTCACTGAGAAAATAC
ACAGCTCTAGTTTTCGGATGATTGCCAGACTGATTGAGTTCATTCTTTCA
ATCCATTCTTGTTGGTCTTACACAATAAACTCAAGGTCTTGAAATATACA
CTACCAAGTATCTAAAGTTGTTTATTTTGATTAATTTTACGACCAATATC
TCTTCATTCTCTGTTGTTTTTTATAGAACCTGAGCCACCGCAATGGTACG
AAGATCCACAGATCTACTATTATGGTGGCGGTGGCATTATCTTCCTTATA
TTTCTCTTCGCTATGAAAAGTCTATGCGCATATTGCAGGTGAGTTTTAAG
CCGTTTTTAATGGTCTTTGCAAACTCGTTCTAGCAATGTGTTTGCTTTGT
TTGACCTCAGGGAGGGATATGTGCTAATCAGTCTCTATTGTACCGACAGG
GACGCAAAAACCATAAAACAGCTTTTGGGTTTGTAGATTCTCGTTATTTT
GGTCAAAGTTCGAAAAACGTTCCTGGAATTTGTGAAGATAGGCTCTCGAA
GAGTCGTAAAAACATTAATTTAGTCTCTGGTCTCAGTTTCTTTAAACTTT
GGCTCGGATATACCGGTCACCTCATTGAAGCAACCTTGATTCCTGAATAT
TGTAAAATTCCATAATGATGATATTCTTATCAAAGTCTTATTTTGTTGGT
CGATTTAATCACAAATGTTTTTTATATTAACAAGATATTTTTATAAAAAG
AAAATAAGTTTCCACATTTGATAGTACGATAGAAACTATTTTACGTACTC
TTTACCGATCAAATTTACTTTTATCTTTCAGTAAGTACAGCAGTGATTAC
TTGTTGCCACGCTGGANTACTGTTCACTGAGAAAATACACAGCTCTAGTT
TTCGGATGATTGCCAGACTGATTGAGTTCATTCTTTCAATCCATTCTTGT
TGGTCTTACACAATAAACTCAAGGTCTTGAAATATACACTACCAAGTATC
TAAAGTTGTTTATTTTGATTAATTTTACGACCAATATCTCTTCATTCTCT
GTTGTTTTTTATAGAACCTGAGCCACCGCAATGGTACGAAGATCCACAGA
TCTACTATTATGGTGGCGGTGGCATTATCTTCCTTATATTTCTCTTCGCT
ATGAAAAGTCTATGCGCATATTGCAGGTGAGTTTTAAGCCGTTTTTAATG
GTCTTTGCAAACTCGTTCTAGCAATGTGTTTGCTTTGTTTGACCTCAGGG
AGGGGTATGTGCTAATCAGTCTCTATTGTACCGACAGGGACGCAAAAACC
ATAAAACAGCTTTTGGGTTTGTAGATTCTCGTTATTTTGGTCAAAGTTCG
AAAAACGTTCCTGGAATTTGTGAAGATAGGCTCTCGAAGAGTCGTAAAAA
CATTAATTTAGTCTCTGGTCTCAGTTTCTTTAAACTTTGGCTCGGATATA
CCGGTCACGTCATTGAAGCAACCTTGATTCCTGAATATTGTAAAATTCCA
TAATGATGATATTCTTATCAAAGTCTTATTTTGTTGGTAGATTTAATCAC
AAATGTTTTTTATATTAACAAGATATTTTTATAAAAAGAAAATAAGTTTC
CACATTTGATAGTACGATAGAAACTATTTTACGTACTCTTTACCGATCAA
ATTTACTTTTATCTTTCAGTAAGTACAGCAGTGATTACTTGTTGCCACGC
TGGAAGCTCCAGAGACGCAAGAGAGGACAGAAAGTTCGTGAATTTTGGTG
TTTACAACATATTGTGTCTGTCGAAGAACTTCATAAAAAACCAAAAACCT
TTAAAGTGCGAGTTGATAGGACAATTCCGTAAGAATTGTTGCTTGAGATT
GTCTTTTATATTATGAGAGGAATATCAGTTTTTTATATTTGTTCACGCAG
TTAAAATATGAAATTACGTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061690-exon-scaffold_36-1575043694:1339810..1341472 | TCONS_00061690-exon-scaffold_36-1575043694:1339810..1341472 | Clytia hemisphaerica | exon |
| TCONS_00061690-exon-scaffold_36-1575043694:1337547..1337658 | TCONS_00061690-exon-scaffold_36-1575043694:1337547..1337658 | Clytia hemisphaerica | exon |
| TCONS_00061690-exon-scaffold_36-1575043694:1336801..1337053 | TCONS_00061690-exon-scaffold_36-1575043694:1336801..1337053 | Clytia hemisphaerica | exon |
| TCONS_00061690-exon-scaffold_36-1510915933:1339810..1341472 | TCONS_00061690-exon-scaffold_36-1510915933:1339810..1341472 | Clytia hemisphaerica | exon |
| TCONS_00061690-exon-scaffold_36-1510915933:1337547..1337658 | TCONS_00061690-exon-scaffold_36-1510915933:1337547..1337658 | Clytia hemisphaerica | exon |
| TCONS_00061690-exon-scaffold_36-1510915933:1336801..1337053 | TCONS_00061690-exon-scaffold_36-1510915933:1336801..1337053 | Clytia hemisphaerica | exon |
| TCONS_00061690-exon-scaffold_36-1491911889:1339810..1341472 | TCONS_00061690-exon-scaffold_36-1491911889:1339810..1341472 | Clytia hemisphaerica | exon |
| TCONS_00061690-exon-scaffold_36-1491911889:1337547..1337658 | TCONS_00061690-exon-scaffold_36-1491911889:1337547..1337658 | Clytia hemisphaerica | exon |
| TCONS_00061690-exon-scaffold_36-1491911889:1336801..1337053 | TCONS_00061690-exon-scaffold_36-1491911889:1336801..1337053 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:1336801..1341472 - |
Blast
The following BLAST results are available for this feature:
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