Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061696 ID=TCONS_00061696|Name=TCONS_00061696|organism=Clytia hemisphaerica|type=transcript|length=2005bpRun BLAST on NCBI protein sequence of TCONS_00061696-protein >TCONS_00061696-protein ID=TCONS_00061696-protein|Name=TCONS_00061696-protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp MNQRQGLIMDAANQARQDNNGPRKSRGVSFGSNGASSTPQITTIHTKARLRun BLAST on NCBI transcript from alignment at scaffold_36:1396986..1404838- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061696 ID=TCONS_00061696|Name=TCONS_00061696|organism=Clytia hemisphaerica|type=transcript|length=7853bp|location=Sequence derived from alignment at scaffold_36:1396986..1404838- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_36:1396986..1404838- >TCONS_00061696 ID=TCONS_00061696|Name=TCONS_00061696|organism=Clytia hemisphaerica|type=CDS|length=8829bp|location=Sequence derived from alignment at scaffold_36:1396986..1404838- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061696 vs. Swiss-Prot (Human)
Match: NUDT9 (ADP-ribose pyrophosphatase, mitochondrial OS=Homo sapiens GN=NUDT9 PE=1 SV=1) HSP 1 Score: 275.404 bits (703), Expect = 2.611e-85 Identity = 147/304 (48.36%), Postives = 198/304 (65.13%), Query Frame = 1 Query: 298 VSFGSNGASSTPQITTIHTKARLPNYPGNSIVKRFKVPDDKVLWQESFVEYDPTLYTASFVLDGPYWADEDLM--NLTPDRRPLLAFNKYDTECKVNRKSHMGQYEVVNKLPRNPYGRTGVIGRGNLGRFGPNHAADPIATRWRRTSAGIEIDN---GKRVLEFIAIQRRDNQQWAIPGGMVEPGENVSETLRKEFTEEALAKLDMEKRKRDQLSARIDHLFS-NGVEVYKGYVDDPRNTDNAWMETVACNFHDDTGEVFGEFQLKAGDDAQAVRWQRVSGNIPLFASHVGILEQVAKMHNAAF 1191 V GSNG+ H KAR YPG S V+R +VP++KV W + +Y P YTA VL GP WAD + N +P FN+ D V RKS G YE+ N PRNP GRTG++GRG LGR+GPNHAADPI TRW+R S+G +I + GK +L+F+AI+R+D +WAIPGGMV+PGE +S TL++EF EEAL L ++ ++ ++ LFS + + +YKGYVDDPRNTDNAWMET A N+HD+TGE+ L+AGDDA V+W ++ + L+ASH ++ VA+ +A + Sbjct: 50 VMSGSNGSKENS-----HNKARTSPYPG-SKVERSQVPNEKVGWLVEWQDYKPVEYTAVSVLAGPRWADPQISESNFSPK------FNEKDGH--VERKSKNGLYEIENGRPRNPAGRTGLVGRGLLGRWGPNHAADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASHSQFIKLVAEKRDAHW 339 The following BLAST results are available for this feature:
BLAST of TCONS_00061696 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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