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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061699 ID=TCONS_00061699|Name=TCONS_00061699|organism=Clytia hemisphaerica|type=transcript|length=685bp
TATTAAGAAAACAGAATGCTGATATTTTTTGACAGACTGGTGATTAGCGT
GAACTCAAAAAATTACAAGGATGAAGCTTTACTTCTTGATATTTACTGCA
GTTGTTTTAGTTTACGCTAACGAATGGCCACCTGTCAGCGAGGAAGATTG
TTCACCAGACACCAAACAAAAAGCTATGCATGGAAAAATGACCTTTGACC
CTCCGCTTAGTGAATCCCCAATGACGTCATTTGAAGTTGACGTCGAATGG
AATGATTTGAAGTTTCACCCAACGGAGAATATGGAGATGAAAGGAGGCAT
GAACGTGGTGTACACTTTGGGAATGAAAAATGGCCCTGAAGGACGTTTTG
GGATTGAATTATCACACTCTGGAGGCCAGTTCATGTTCTCAATGGCTGAC
GGCAATCGAAAAACCTCAGACGGCAAGTTACAAAAATCTTCCAAACTTGC
TTGGCCAATCGATACCGAACATTGCAAAAGACATTGCCAGAACTGCGAGA
AAGACAATGGGTTAACAACAGGAACTTACTGCTCAAGCGAGGAAGATATT
ATGATGGTAGGCGATAAACATACTATTAAATTGGAACGCATTTCTGAGAA
ACAAACAATCAACACCAAAGACTTTGGAGGATTTGAGAAAGCACATCAAG
ATCATTTGAATGAAGGAGATCGTGAAATCACTGGT Run BLAST on NCBI protein sequence of TCONS_00061699-protein >TCONS_00061699-protein ID=TCONS_00061699-protein|Name=TCONS_00061699-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
MKLYFLIFTAVVLVYANEWPPVSEEDCSPDTKQKAMHGKMTFDPPLSESP
MTSFEVDVEWNDLKFHPTENMEMKGGMNVVYTLGMKNGPEGRFGIELSHS
GGQFMFSMADGNRKTSDGKLQKSSKLAWPIDTEHCKRHCQNCEKDNGLTT
GTYCSSEEDIMMVGDKHTIKLERISEKQTINTKDFGGFEKAHQDHLNEGD
REITG Run BLAST on NCBI transcript from alignment at scaffold_36:1462646..1466286- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061699 ID=TCONS_00061699|Name=TCONS_00061699|organism=Clytia hemisphaerica|type=transcript|length=3641bp|location=Sequence derived from alignment at scaffold_36:1462646..1466286- (Clytia hemisphaerica)
TATTAAGAAAACAGAATGCTGATATTTTTTGACAGACTGGTGATTAGCGT
GAACTCAAAAAATTACAAGGATGAAGCTTTACTTCTTGATATTTACTGCA
GTTGTTTTAGTTTACGGTAAGTTTGAAATCCCACCCGTTTCAATATTTTG
GTCAAGTTATCAAAGTTCACTTCAAACAGCAAAAATGGTAATTCCCAATC
CATACATACATGCATAACTAAGTTGGTATTGTATTGGAGTTCGTTACCAA
AAGACTACATTAAGAGGACTTATTTTGGCGAGAAATAATTTTGGCAAATT
AGATTAGATAGAATTTGCCAAAATTAAATACTTTGCCCATTCAATTCATC
AAAATAAGTTCTCGCCACAGTTAATTGCTTTTGTTTTTTGAAAAAAAAAA
ACCCTAAATTCATCAAAATTGCTCAAATTAATGCAAAATAGAACAAATTC
AGTCATTCGTTAAAGTNCACCCTAAATTCATCAAAATTGCTCAAATTAAG
GCAAAATAGAACAAATTCAGTCATTCGTTAAAGTTAGTTCTTGCCAAAAT
TAATAAGTTGGACCATATTCGCAATATTTTGATAGCTAACGATTCGAAAA
AGATGAAACTTGAAGTTCTATAATTCATATTTTGTTTTTTTCTTGTACAC
TGGACCATATTCGCCAAAAAAGTTCTCGCCAAAATTAAAAATTCTCAAGA
TATATGCTGCTCACTCACCAATATTAGTTCTCGTCAAAATTAGTGTACGA
TTCATAAAAAGTGTCGGGCTATGGGGCATGAAATAAAATTCCAGTTGTGT
CTCCCTTTTAAAACTTCAAAACAGAATTTAAGGAGCTGTGTTCTAAGGTC
TATATTTCAAACCGTCTAATTTAAAAGCTTGCGCACCGTAGCCGGATGAT
CTAACTTTGCATTACGGTCGCTAACTCAAATATACAGTTGACTATCGCTA
ATTCGGAGAATGTCTTTGTTAGAATTACAGAGACATTCGAATTATAGAAA
GTATTTGAAGAGGGTCACCTCGACAACATCGATATATAACAAGAGTCGAA
CAAGAAAAAGTTAACTGTAAATACTATTTACACAGCTATAGTTAACCTTA
TCCCATCTATTTCAGCTAACGAATGGCCACCTGTCAGCGAGGAAGATTGT
TCACCAGACACCAAACAAAAAGCTATGCATGGAAAAATGACCTTTGACCC
TCCGCTTAGTGAATCCCCAATGACGTCATTTGAAGTTGACGTCGAATGGA
ATGATTTGAAGTTTCACCCAACGGAGAATATGGAGATGAAAGGAGGCATG
AACGTGGTGTACACTTTGGGAATGAAAAATGGCCCTGAAGGACGTTTTGG
GATTGAATTATCACACTCTGGAGGTATGATTTTGAATTCTAAAATCATGT
TAAAAAGATATGATAGCAACCTGACTGAACGGCGATTTGGCTTACATGAA
ATAAAAATAAATAGATATACCTAGTTAAGTACAAAGGAATTCAGACTCGT
TCCCAGTCCGTTAAATCGCTTTTCATGATCATGATTGTACAAAGCTTTAT
CAGTAATAGAATTCAAAAGTAGTACGAGTGCACATTTCAAATTCAAGAAA
AAGTTTACCATATTATCTCACAGAAAAATTGGCCAAAATATCGTCCCCGG
TTGAAAATTATCCTCCAATCTTTGTAGCCACTGAGAATAATCAAATAAAC
CAATCCTCAATTCAAAATATTATGCCAAATTTTCCCATCCCCAATGAATT
TTCTGCCTTGAAAACAAAAGAATTGAAATCCCCAGGCATAAAAAATATGG
GAATATCGATCCCCATTAAGTTTCAGTCCGTCATTTTTATCCCCACTGGC
TGAAAAAGTCATACTGAGTCTGTAAGGAGGAAGTGTTCGTCAAAGATCTG
AAAAAGTTTTAAAGGCATTATCAGATGATTTTTGATATTTGACTTAGAGA
TTCATTTCATTGTCCTAAGGAACACCAACAATTTTCAAATTTTTACTTGA
AAACAATAGAAATTCAACGTGAAGACTGTATAAAGACTCATTTTAAAAGA
TTTCACAAGTCAAATATCTCAGCTTTGGAAAAAAATTGGACCAAAAGATT
TAGAGGTGTCTCTCTGGACCATAAAATCATTTGATTCAACCGGGGACGAT
ATAGTTGTCAAGTATTCTTTGAAGCTCTATGGCCAATCCAATCCTTGTAG
GGTTTAGATTGTTAACTTTTATTACTATTATTATTATAATCCCTTTAAGT
TCTTTTACCCAGTTAATTTGAATACCATGAATTTGTCGTCAAAGAAGAAA
TTTTAAATTCATAAATAACCGATTATCTTCTGAAAAGATTTTCGAATACA
ACTTCAATCATAAGGAACTTTTTAAATTCAAATTCTCTACCATGATGAAA
GACAAATTTATATGGCGAATTTTGATTCTTAATATTTTATTATTCAGGCC
AGTTCATGTTCTCAATGGCTGACGGCAATCGAAAAACCTCAGACGGCAAG
TTACAAAAATCTTCCAAACTTGCTTGGCCAATCGATACCGAACATTGCAA
AAGACATTGCCAAAACTGTGAGAAAGACAATGGGTTAACAACAGNAAACT
TGCATGGCCAATAGATACCGAACATTGCAAAAGACATTGCCAGAACTGCG
AGAAAGACAATGGGTTAACAACAGGAACTTACTGCTCAAGCGAGGAAGAT
ATTATGATGGTAGGTTGACTTTTTTACAGGAGCTCTAAACATTTTCTCTG
GTCTTTTCACAAGTTGAATTTCCTTAGGAAATATTTGAAATATATTTCAT
CTATCTTAAGTAAATTATACAAGATTTTCTTGAAGTAGAGGAAAAGATCA
GTGTTTGTATAATTTAGAAAAACACGTTTTGTTATTTTAAGAAGCTAGTC
TTACCAAGCAGCCGCTCAATGTTTCTTAAGAAATCGGCCTTTAGAGCCTT
AAATGTTTCTGACATGTTTCTAAACTTTTTGACATAATCAGCCTATTTTT
CAGGCAAGAAAAAAAAACGTTTTTCTTTTGATTGGAAGGTTCTTAAAAAA
ACCGAATTAAAAAATTTTCTCATTCTCAGCCTCAGCATGTTTCTTATATG
TTTCTTAGTTTTTAGGCATTCTGAGCCTCGTGTTTCTTAAAAGTGTGTTT
CTTAAAAATGAAAAAAGACGTGAAATCGACTAAAGCGACCAAACATCTTG
AATTGTGGTCATTGCTTTGTAACCTTGACTCGGAGGCCCAGATTTTGATG
CACATGCACAAGCATTATGTATCTATTTTACGTCATTTCATACGGATAAA
ATGATGCGGTTGAATAAAACTAGCTTGAAGTCAAAGGGGAAGTCTTAATT
GTTTAAATTACAAACTGCTCGAATAATAGAAACGAAAACATTTCACGGGG
GTATCCCTATGACGGGAACTGAGAATTAGCTCAAATCATTGAAAAAATAA
GAGAGTTTATTGAAAGCCTTAATGTAAGACTAAATATGTAAAGTTTTTAT
TTTTGAATTTAGGTAGGCGATAAACATACTATTAAATTGGAACGCATTTC
TGAGAAACAAACAATCAACACCAAAGACTTTGGAGGATTTGAGAAAGCAC
ATCAAGATCATTTGAATGAAGGAGATCGTGAAATCACTGGT Coding sequence (CDS) from alignment at scaffold_36:1462646..1466286- >TCONS_00061699 ID=TCONS_00061699|Name=TCONS_00061699|organism=Clytia hemisphaerica|type=CDS|length=3075bp|location=Sequence derived from alignment at scaffold_36:1462646..1466286- (Clytia hemisphaerica)
GCGATAAACATACTATTAAATTGGAACGCATTTCTGAGAAACAAACAATC
AACACCAAAGACTTTGGAGGATTTGAGAAAGCACATCAAGATCATTTGAA
TGAAGGAGATCGTGAAATCACTGGTATTGCCAGAACTGCGAGAAAGACAA
TGGGTTAACAACAGGAACTTACTGCTCAAGCGAGGAAGATATTATGATGG
TAGGCCAGTTCATGTTCTCAATGGCTGACGGCAATCGAAAAACCTCAGAC
GGCAAGTTACAAAAATCTTCCAAACTTGCTTGGCCAATCGATACCGAACA
TTGCAAAAGACCTAACGAATGGCCACCTGTCAGCGAGGAAGATTGTTCAC
CAGACACCAAACAAAAAGCTATGCATGGAAAAATGACCTTTGACCCTCCG
CTTAGTGAATCCCCAATGACGTCATTTGAAGTTGACGTCGAATGGAATGA
TTTGAAGTTTCACCCAACGGAGAATATGGAGATGAAAGGAGGCATGAACG
TGGTGTACACTTTGGGAATGAAAAATGGCCCTGAAGGACGTTTTGGGATT
GAATTATCACACTCTGGAGATGAAGCTTTACTTCTTGATATTTACTGCAG
TTGTTTTAGTTTACGGCGATAAACATACTATTAAATTGGAACGCATTTCT
GAGAAACAAACAATCAACACCAAAGACTTTGGAGGATTTGAGAAAGCACA
TCAAGATCATTTGAATGAAGGAGATCGTGAAATCACTGGTATTGCCAGAA
CTGCGAGAAAGACAATGGGTTAACAACAGGAACTTACTGCTCAAGCGAGG
AAGATATTATGATGGTAGGCCAGTTCATGTTCTCAATGGCTGACGGCAAT
CGAAAAACCTCAGACGGCAAGTTACAAAAATCTTCCAAACTTGCTTGGCC
AATCGATACCGAACATTGCAAAAGACCTAACGAATGGCCACCTGTCAGCG
AGGAAGATTGTTCACCAGACACCAAACAAAAAGCTATGCATGGAAAAATG
ACCTTTGACCCTCCGCTTAGTGAATCCCCAATGACGTCATTTGAAGTTGA
CGTCGAATGGAATGATTTGAAGTTTCACCCAACGGAGAATATGGAGATGA
AAGGAGGCATGAACGTGGTGTACACTTTGGGAATGAAAAATGGCCCTGAA
GGACGTTTTGGGATTGAATTATCACACTCTGGAGATGAAGCTTTACTTCT
TGATATTTACTGCAGTTGTTTTAGTTTACGGCGATAAACATACTATTAAA
TTGGAACGCATTTCTGAGAAACAAACAATCAACACCAAAGACTTTGGAGG
ATTTGAGAAAGCACATCAAGATCATTTGAATGAAGGAGATCGTGAAATCA
CTGGTATTGCCAGAACTGCGAGAAAGACAATGGGTTAACAACAGGAACTT
ACTGCTCAAGCGAGGAAGATATTATGATGGTAGGCCAGTTCATGTTCTCA
ATGGCTGACGGCAATCGAAAAACCTCAGACGGCAAGTTACAAAAATCTTC
CAAACTTGCTTGGCCAATCGATACCGAACATTGCAAAAGACCTAACGAAT
GGCCACCTGTCAGCGAGGAAGATTGTTCACCAGACACCAAACAAAAAGCT
ATGCATGGAAAAATGACCTTTGACCCTCCGCTTAGTGAATCCCCAATGAC
GTCATTTGAAGTTGACGTCGAATGGAATGATTTGAAGTTTCACCCAACGG
AGAATATGGAGATGAAAGGAGGCATGAACGTGGTGTACACTTTGGGAATG
AAAAATGGCCCTGAAGGACGTTTTGGGATTGAATTATCACACTCTGGAGA
TGAAGCTTTACTTCTTGATATTTACTGCAGTTGTTTTAGTTTACGGCGAT
AAACATACTATTAAATTGGAACGCATTTCTGAGAAACAAACAATCAACAC
CAAAGACTTTGGAGGATTTGAGAAAGCACATCAAGATCATTTGAATGAAG
GAGATCGTGAAATCACTGGTATTGCCAGAACTGCGAGAAAGACAATGGGT
TAACAACAGGAACTTACTGCTCAAGCGAGGAAGATATTATGATGGTAGGC
CAGTTCATGTTCTCAATGGCTGACGGCAATCGAAAAACCTCAGACGGCAA
GTTACAAAAATCTTCCAAACTTGCTTGGCCAATCGATACCGAACATTGCA
AAAGACCTAACGAATGGCCACCTGTCAGCGAGGAAGATTGTTCACCAGAC
ACCAAACAAAAAGCTATGCATGGAAAAATGACCTTTGACCCTCCGCTTAG
TGAATCCCCAATGACGTCATTTGAAGTTGACGTCGAATGGAATGATTTGA
AGTTTCACCCAACGGAGAATATGGAGATGAAAGGAGGCATGAACGTGGTG
TACACTTTGGGAATGAAAAATGGCCCTGAAGGACGTTTTGGGATTGAATT
ATCACACTCTGGAGATGAAGCTTTACTTCTTGATATTTACTGCAGTTGTT
TTAGTTTACGGCGATAAACATACTATTAAATTGGAACGCATTTCTGAGAA
ACAAACAATCAACACCAAAGACTTTGGAGGATTTGAGAAAGCACATCAAG
ATCATTTGAATGAAGGAGATCGTGAAATCACTGGTATTGCCAGAACTGCG
AGAAAGACAATGGGTTAACAACAGGAACTTACTGCTCAAGCGAGGAAGAT
ATTATGATGGTAGGCCAGTTCATGTTCTCAATGGCTGACGGCAATCGAAA
AACCTCAGACGGCAAGTTACAAAAATCTTCCAAACTTGCTTGGCCAATCG
ATACCGAACATTGCAAAAGACCTAACGAATGGCCACCTGTCAGCGAGGAA
GATTGTTCACCAGACACCAAACAAAAAGCTATGCATGGAAAAATGACCTT
TGACCCTCCGCTTAGTGAATCCCCAATGACGTCATTTGAAGTTGACGTCG
AATGGAATGATTTGAAGTTTCACCCAACGGAGAATATGGAGATGAAAGGA
GGCATGAACGTGGTGTACACTTTGGGAATGAAAAATGGCCCTGAAGGACG
TTTTGGGATTGAATTATCACACTCTGGAGATGAAGCTTTACTTCTTGATA
TTTACTGCAGTTGTTTTAGTTTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061699-exon-scaffold_36-1575043694:1466171..1466286 | TCONS_00061699-exon-scaffold_36-1575043694:1466171..1466286 | Clytia hemisphaerica | exon |
| TCONS_00061699-exon-scaffold_36-1575043694:1464914..1465171 | TCONS_00061699-exon-scaffold_36-1575043694:1464914..1465171 | Clytia hemisphaerica | exon |
| TCONS_00061699-exon-scaffold_36-1575043694:1463732..1463839 | TCONS_00061699-exon-scaffold_36-1575043694:1463732..1463839 | Clytia hemisphaerica | exon |
| TCONS_00061699-exon-scaffold_36-1575043694:1463574..1463651 | TCONS_00061699-exon-scaffold_36-1575043694:1463574..1463651 | Clytia hemisphaerica | exon |
| TCONS_00061699-exon-scaffold_36-1575043694:1462646..1462770 | TCONS_00061699-exon-scaffold_36-1575043694:1462646..1462770 | Clytia hemisphaerica | exon |
| TCONS_00061699-exon-scaffold_36-1510915933:1466171..1466286 | TCONS_00061699-exon-scaffold_36-1510915933:1466171..1466286 | Clytia hemisphaerica | exon |
| TCONS_00061699-exon-scaffold_36-1510915933:1464914..1465171 | TCONS_00061699-exon-scaffold_36-1510915933:1464914..1465171 | Clytia hemisphaerica | exon |
| TCONS_00061699-exon-scaffold_36-1510915933:1463732..1463839 | TCONS_00061699-exon-scaffold_36-1510915933:1463732..1463839 | Clytia hemisphaerica | exon |
| TCONS_00061699-exon-scaffold_36-1510915933:1463574..1463651 | TCONS_00061699-exon-scaffold_36-1510915933:1463574..1463651 | Clytia hemisphaerica | exon |
| TCONS_00061699-exon-scaffold_36-1510915933:1462646..1462770 | TCONS_00061699-exon-scaffold_36-1510915933:1462646..1462770 | Clytia hemisphaerica | exon |
| TCONS_00061699-exon-scaffold_36-1491911889:1466171..1466286 | TCONS_00061699-exon-scaffold_36-1491911889:1466171..1466286 | Clytia hemisphaerica | exon |
| TCONS_00061699-exon-scaffold_36-1491911889:1464914..1465171 | TCONS_00061699-exon-scaffold_36-1491911889:1464914..1465171 | Clytia hemisphaerica | exon |
| TCONS_00061699-exon-scaffold_36-1491911889:1463732..1463839 | TCONS_00061699-exon-scaffold_36-1491911889:1463732..1463839 | Clytia hemisphaerica | exon |
| TCONS_00061699-exon-scaffold_36-1491911889:1463574..1463651 | TCONS_00061699-exon-scaffold_36-1491911889:1463574..1463651 | Clytia hemisphaerica | exon |
| TCONS_00061699-exon-scaffold_36-1491911889:1462646..1462770 | TCONS_00061699-exon-scaffold_36-1491911889:1462646..1462770 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:1462646..1466286 - |
Blast
The following BLAST results are available for this feature:
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