TCONS_00061702 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061702
Unique NameTCONS_00061702
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length573

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061702 ID=TCONS_00061702|Name=TCONS_00061702|organism=Clytia hemisphaerica|type=transcript|length=573bp
AGGGTACATTTTCATTGAGTATCGCGCTTCTCGGTGAATGTGCGTCGAAG
TGTAGCGCGTACGCCAAAGCCCTTCATTACAAAGAAGAAGAATTCAAACA
AGGTGTTACTACTGAAGTCCTCGAATCACTGATCAGTATCAACAACAAGC
TACAGAATCCTGAAGCAGCAAATGGTGTTTTGATGTATGCTAAGAGAAAC
TCTAAGGTCGATTATAAAGTGCAACAAAGATGGTACGAGAAACTTCACGA
ATGGGAGAACGCATTAAATGCTTACGATAAGAAACATGCAACACACCCTG
ACGATCATGAAATCTTGTTAGGTCGTATGCGGTGTTTGGAAGCCCTCGGA
AAATGGGGTGAATTGCACAATTTGGCTTGTGAGAAATGGTCAGCGGTAAG
CGATGATGTCCGACATAAAATGGCTAGAACTGCTGCTTCAGCTGCTTGGG
GTCTCGGTGAATGGCTTGGTATGGAAGAATATACGATCATGATCCAAAGA
GATACTTTCGAAGGAGCTTTCTTCAGAGCTGTTCTACAAATCCATAAAAA
TCAATTCGTCAGAGCTCAAAGTG
Run BLAST on NCBI

protein sequence of TCONS_00061702-protein

>TCONS_00061702-protein ID=TCONS_00061702-protein|Name=TCONS_00061702-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
GTFSLSIALLGECASKCSAYAKALHYKEEEFKQGVTTEVLESLISINNKL
QNPEAANGVLMYAKRNSKVDYKVQQRWYEKLHEWENALNAYDKKHATHPD
DHEILLGRMRCLEALGKWGELHNLACEKWSAVSDDVRHKMARTAASAAWG
LGEWLGMEEYTIMIQRDTFEGAFFRAVLQIHKNQFVRAQS
Run BLAST on NCBI

transcript from alignment at scaffold_36:1520810..1522591-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061702 ID=TCONS_00061702|Name=TCONS_00061702|organism=Clytia hemisphaerica|type=transcript|length=1782bp|location=Sequence derived from alignment at scaffold_36:1520810..1522591- (Clytia hemisphaerica)
AGGGTACATTTTCATTGAGTATCGCGCTTCTCGGTGAATGTGCGTCGAAG
TGTAGCGCGTACGCCAAAGCCCTTCATTACAAAGAAGAAGAATTCAAACA
AGGTGTTACTACTGAAGTCCTCGAATCACTGATCAGGTATTTTATTTAAG
TGTATTTTGTGGAATGGTTGTTTTATTTCTATTTAACTATCAAAAACATT
TTTTCGTTTGCTGCGTGATTTTTCATGGAATCTCGCCAAAGTCGGGACTT
GGACCGTTTTTGAAGTGTGTTACGCCCGATAGAACATTCTGATGATTCAA
TTTCCTTCTATTTCCAGTATCAACAACAAGCTACAGAATCCTGAAGCAGC
AAATGGTGTTTTGATGTATGCTAAGAGAAACTCTAAGGTCGATTATGTAA
GTTTTGTGCTGTAACTTTGATAAATTCATGCTCTCTATTGAAAAGACTGT
CACCAGGACACGTCTCAGTGAATCAGCATAATGGACTCTTCTAAACGTTT
TTTGTGATCTTATTTTTTCAATGGATCGAACCCTTTTTCCCTTTAGGTAA
AAAAACCCTAATAAACAAGGCTCTGCGATTCCAAAATTTGAAAAAACTTG
CCTGTTCAAATTATGGAGAGTTTTTATTTTTACAAGAAAATTGCATTTTA
TCCTATTTTGTCCAATAGAAAGTGCAACAAAGATGGTACGAGAAACTTCA
CGAATGGGAGAACGCATTAAATGCTTACGATAAGAAACATGCAACACACC
CTGACGATCATGAAATCTTGTTAGGTCGTATGCGGTGTTTGGAAGCCCTC
GGAAAATGGTAAGATGGCCTGGATCGTCTAATGTCTCACCCCCAGGTTTG
AGGTCTCGATCTTTCTTTTCATTTTTCCTTGATTTTGGAGGGGTTTCCTT
TAAAATATGGATGACGGTTGAAATGTAACATCTCGGCCTCCGTCTTGGTA
GTAGTTACTGTTGATGTTGTAATGTGAATTTCGCACTAGGTTTGTGTTGG
TGTTTTCGGTTTAAATTTACCGATTATTTTAACTACTTTTCTGTTTGATT
ATGGTAAGGAAGTTAAAAAACCAAGCAAACTTTTTTGACAGCTTTAAAAC
TGTTATTAAGACGTGTCTTTAACCTTTTTTTTAGGGGTGAATTGCACAAT
TTGGCTTGTGAGAAATGGTCAGCGGTAAGCGATGATGTCCGACATAAAAT
GGCTAGAACTGCTGCTTCAGCTGCTTGGGGTCTCGGTAAGTTTATGATTA
TTCGCTACTACATTTTCTCGTGCTTTTTGATAAAAATCTCCCAAGGTGGA
ACTACACAAATATAGCGGAGTTACCATACAGGAGAAACGCTAACCGTGAA
GAGAAAGAATATTTTTCTTGATTCATTTTTCATTTCATAGTGGAAAAAAT
ATTGACTAAAATGAAGGGCTCAAATTGTGTTTCGATATAATAAGATGTGT
GGAATAGTTCACGCTTATATCTATCATCCTATATCTTTTCTAAGCCGAAT
ATCTTATTTTCATTAAAGATTGGCATAGAAGCGCCATGAAACTCTGAGTT
TGGGGATTTTAGTCAACTCTTATCGTAACATTTTTCTGTCTATGACGCTC
TAGATTTAAGGTCTGTCAGACGTGCTTTGAATTTCGAACGTCACGATTCT
ATATATTAATTCCAGGTGAATGGCTTGGTATGGAAGAATATACGATCATG
ATCCAAAGAGATACTTTCGAAGGAGCTTTCTTCAGAGCTGTTCTACAAAT
CCATAAAAATCAATTCGTCAGAGCTCAAAGTG

Coding sequence (CDS) from alignment at scaffold_36:1520810..1522591-

>TCONS_00061702 ID=TCONS_00061702|Name=TCONS_00061702|organism=Clytia hemisphaerica|type=CDS|length=2850bp|location=Sequence derived from alignment at scaffold_36:1520810..1522591- (Clytia hemisphaerica)
GTGAATGGCTTGGTATGGAAGAATATACGATCATGATCCAAAGAGATACT
TTCGAAGGAGCTTTCTTCAGAGCTGTTCTACAAATCCATAAAAATCAATT
CGTCAGAGCTCAAAGTGGGTGAATTGCACAATTTGGCTTGTGAGAAATGG
TCAGCGGTAAGCGATGATGTCCGACATAAAATGGCTAGAACTGCTGCTTC
AGCTGCTTGGGGTCTCGAAAGTGCAACAAAGATGGTACGAGAAACTTCAC
GAATGGGAGAACGCATTAAATGCTTACGATAAGAAACATGCAACACACCC
TGACGATCATGAAATCTTGTTAGGTCGTATGCGGTGTTTGGAAGCCCTCG
GAAAATGTATCAACAACAAGCTACAGAATCCTGAAGCAGCAAATGGTGTT
TTGATGTATGCTAAGAGAAACTCTAAGGTCGATTATGGTACATTTTCATT
GAGTATCGCGCTTCTCGGTGAATGTGCGTCGAAGTGTAGCGCGTACGCCA
AAGCCCTTCATTACAAAGAAGAAGAATTCAAACAAGGTGTTACTACTGAA
GTCCTCGAATCACTGATCAGGTGAATGGCTTGGTATGGAAGAATATACGA
TCATGATCCAAAGAGATACTTTCGAAGGAGCTTTCTTCAGAGCTGTTCTA
CAAATCCATAAAAATCAATTCGTCAGAGCTCAAAGTGGGTGAATTGCACA
ATTTGGCTTGTGAGAAATGGTCAGCGGTAAGCGATGATGTCCGACATAAA
ATGGCTAGAACTGCTGCTTCAGCTGCTTGGGGTCTCGAAAGTGCAACAAA
GATGGTACGAGAAACTTCACGAATGGGAGAACGCATTAAATGCTTACGAT
AAGAAACATGCAACACACCCTGACGATCATGAAATCTTGTTAGGTCGTAT
GCGGTGTTTGGAAGCCCTCGGAAAATGTATCAACAACAAGCTACAGAATC
CTGAAGCAGCAAATGGTGTTTTGATGTATGCTAAGAGAAACTCTAAGGTC
GATTATGGTACATTTTCATTGAGTATCGCGCTTCTCGGTGAATGTGCGTC
GAAGTGTAGCGCGTACGCCAAAGCCCTTCATTACAAAGAAGAAGAATTCA
AACAAGGTGTTACTACTGAAGTCCTCGAATCACTGATCAGGTGAATGGCT
TGGTATGGAAGAATATACGATCATGATCCAAAGAGATACTTTCGAAGGAG
CTTTCTTCAGAGCTGTTCTACAAATCCATAAAAATCAATTCGTCAGAGCT
CAAAGTGGGTGAATTGCACAATTTGGCTTGTGAGAAATGGTCAGCGGTAA
GCGATGATGTCCGACATAAAATGGCTAGAACTGCTGCTTCAGCTGCTTGG
GGTCTCGAAAGTGCAACAAAGATGGTACGAGAAACTTCACGAATGGGAGA
ACGCATTAAATGCTTACGATAAGAAACATGCAACACACCCTGACGATCAT
GAAATCTTGTTAGGTCGTATGCGGTGTTTGGAAGCCCTCGGAAAATGTAT
CAACAACAAGCTACAGAATCCTGAAGCAGCAAATGGTGTTTTGATGTATG
CTAAGAGAAACTCTAAGGTCGATTATGGTACATTTTCATTGAGTATCGCG
CTTCTCGGTGAATGTGCGTCGAAGTGTAGCGCGTACGCCAAAGCCCTTCA
TTACAAAGAAGAAGAATTCAAACAAGGTGTTACTACTGAAGTCCTCGAAT
CACTGATCAGGTGAATGGCTTGGTATGGAAGAATATACGATCATGATCCA
AAGAGATACTTTCGAAGGAGCTTTCTTCAGAGCTGTTCTACAAATCCATA
AAAATCAATTCGTCAGAGCTCAAAGTGGGTGAATTGCACAATTTGGCTTG
TGAGAAATGGTCAGCGGTAAGCGATGATGTCCGACATAAAATGGCTAGAA
CTGCTGCTTCAGCTGCTTGGGGTCTCGAAAGTGCAACAAAGATGGTACGA
GAAACTTCACGAATGGGAGAACGCATTAAATGCTTACGATAAGAAACATG
CAACACACCCTGACGATCATGAAATCTTGTTAGGTCGTATGCGGTGTTTG
GAAGCCCTCGGAAAATGTATCAACAACAAGCTACAGAATCCTGAAGCAGC
AAATGGTGTTTTGATGTATGCTAAGAGAAACTCTAAGGTCGATTATGGTA
CATTTTCATTGAGTATCGCGCTTCTCGGTGAATGTGCGTCGAAGTGTAGC
GCGTACGCCAAAGCCCTTCATTACAAAGAAGAAGAATTCAAACAAGGTGT
TACTACTGAAGTCCTCGAATCACTGATCAGGTGAATGGCTTGGTATGGAA
GAATATACGATCATGATCCAAAGAGATACTTTCGAAGGAGCTTTCTTCAG
AGCTGTTCTACAAATCCATAAAAATCAATTCGTCAGAGCTCAAAGTGGGT
GAATTGCACAATTTGGCTTGTGAGAAATGGTCAGCGGTAAGCGATGATGT
CCGACATAAAATGGCTAGAACTGCTGCTTCAGCTGCTTGGGGTCTCGAAA
GTGCAACAAAGATGGTACGAGAAACTTCACGAATGGGAGAACGCATTAAA
TGCTTACGATAAGAAACATGCAACACACCCTGACGATCATGAAATCTTGT
TAGGTCGTATGCGGTGTTTGGAAGCCCTCGGAAAATGTATCAACAACAAG
CTACAGAATCCTGAAGCAGCAAATGGTGTTTTGATGTATGCTAAGAGAAA
CTCTAAGGTCGATTATGGTACATTTTCATTGAGTATCGCGCTTCTCGGTG
AATGTGCGTCGAAGTGTAGCGCGTACGCCAAAGCCCTTCATTACAAAGAA
GAAGAATTCAAACAAGGTGTTACTACTGAAGTCCTCGAATCACTGATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038692XLOC_038692Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061702-exon-scaffold_36-1575043694:1522456..1522591TCONS_00061702-exon-scaffold_36-1575043694:1522456..1522591Clytia hemisphaericaexon
TCONS_00061702-exon-scaffold_36-1575043694:1522196..1522274TCONS_00061702-exon-scaffold_36-1575043694:1522196..1522274Clytia hemisphaericaexon
TCONS_00061702-exon-scaffold_36-1575043694:1521784..1521923TCONS_00061702-exon-scaffold_36-1575043694:1521784..1521923Clytia hemisphaericaexon
TCONS_00061702-exon-scaffold_36-1575043694:1521357..1521457TCONS_00061702-exon-scaffold_36-1575043694:1521357..1521457Clytia hemisphaericaexon
TCONS_00061702-exon-scaffold_36-1575043694:1520810..1520926TCONS_00061702-exon-scaffold_36-1575043694:1520810..1520926Clytia hemisphaericaexon
TCONS_00061702-exon-scaffold_36-1510915933:1522456..1522591TCONS_00061702-exon-scaffold_36-1510915933:1522456..1522591Clytia hemisphaericaexon
TCONS_00061702-exon-scaffold_36-1510915933:1522196..1522274TCONS_00061702-exon-scaffold_36-1510915933:1522196..1522274Clytia hemisphaericaexon
TCONS_00061702-exon-scaffold_36-1510915933:1521784..1521923TCONS_00061702-exon-scaffold_36-1510915933:1521784..1521923Clytia hemisphaericaexon
TCONS_00061702-exon-scaffold_36-1510915933:1521357..1521457TCONS_00061702-exon-scaffold_36-1510915933:1521357..1521457Clytia hemisphaericaexon
TCONS_00061702-exon-scaffold_36-1510915933:1520810..1520926TCONS_00061702-exon-scaffold_36-1510915933:1520810..1520926Clytia hemisphaericaexon
TCONS_00061702-exon-scaffold_36-1491911889:1522456..1522591TCONS_00061702-exon-scaffold_36-1491911889:1522456..1522591Clytia hemisphaericaexon
TCONS_00061702-exon-scaffold_36-1491911889:1522196..1522274TCONS_00061702-exon-scaffold_36-1491911889:1522196..1522274Clytia hemisphaericaexon
TCONS_00061702-exon-scaffold_36-1491911889:1521784..1521923TCONS_00061702-exon-scaffold_36-1491911889:1521784..1521923Clytia hemisphaericaexon
TCONS_00061702-exon-scaffold_36-1491911889:1521357..1521457TCONS_00061702-exon-scaffold_36-1491911889:1521357..1521457Clytia hemisphaericaexon
TCONS_00061702-exon-scaffold_36-1491911889:1520810..1520926TCONS_00061702-exon-scaffold_36-1491911889:1520810..1520926Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061702-proteinTCONS_00061702-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:1520810..1522591 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.83034	5.27476	2.30161	2.16831	16.5924	10.0524	13.8311	14.8014	9.56596	11.8363	8.73491	9.18181	10.1658	9.78102	7.58105	10.102	9.00198	12.7215	4.57586	7.57839	9.39408	10.7758	9.5611	9.43534	13.2994	13.0382	8.03809	8.50405	7.50522	4.92143
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR003151PIK-rel_kinase_FAT
IPR014009PIK_FAT
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005488binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00061702 vs. Swiss-Prot (Human)
Match: MTOR (Serine/threonine-protein kinase mTOR OS=Homo sapiens GN=MTOR PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.537e-69
Identity = 119/183 (65.03%), Postives = 145/183 (79.23%), Query Frame = 3 
Query:   21 IALLGECASKCSAYAKALHYKEEEFKQGVTTEVLESLISINNKLQNPEAANGVLMYAKRNSKVDYKVQQRWYEKLHEWENALNAYDKKHATHPDDHEILLGRMRCLEALGKWGELHNLACEKWSAVSDDVRHKMARTAASAAWGLGEWLGMEEYTIMIQRDTFEGAFFRAVLQIHKNQFVRAQ 569
            I LLGE A+KC AYAKALHYKE EF++G T  +LESLISINNKLQ PEAA GVL YA ++   + ++Q  WYEKLHEWE+AL AYDKK  T+ DD E++LGRMRCLEALG+WG+LH   CEKW+ V+D+ + KMAR AA+AAWGLG+W  MEEYT MI RDT +GAF+RAVL +H++ F  AQ
Sbjct: 1380 IVLLGERAAKCRAYAKALHYKELEFQKGPTPAILESLISINNKLQQPEAAAGVLEYAMKHFG-ELEIQATWYEKLHEWEDALVAYDKKMDTNKDDPELMLGRMRCLEALGEWGQLHQQCCEKWTLVNDETQAKMARMAAAAAWGLGQWDSMEEYTCMIPRDTHDGAFYRAVLALHQDLFSLAQ 1561
The following BLAST results are available for this feature:
BLAST of TCONS_00061702 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MTOR4.537e-6965.03Serine/threonine-protein kinase mTOR OS=Homo sapie... [more]
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