TCONS_00061711 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061711
Unique NameTCONS_00061711
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length452

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061711 ID=TCONS_00061711|Name=TCONS_00061711|organism=Clytia hemisphaerica|type=transcript|length=452bp
GCTTCGTATTTCATCTCCTTCATTTGTATCATTGCTTAAGTCACTTTCAT
TACAATGGTCTGTCGGAATGATAAAGATTTCTTGTTCTCCAGGAGCACAA
TCTTGTGCTAGAGTTAATCCTCGTTGGTCACCTTCTGATGATTGTATTGA
AATATTATTCGTATTTAGGGAACAACCAGATACATTTGTCTCGTCTACCT
TGTTGGCTATTGCAGGATGTGACACGTTGCTAGAAGAAGGAAGACATTCT
ATCTGTTGAAAGTCTCCTGGTTTGCTTACTGTTATATCGATTGACATACG
AGACAAATCAGAAGAATTTTCAGTATCAATATCAGTGACATCTGCTTCGC
TTGTGGTTACATTGCATGATATTTGAGGCGTATCCAAAAGATTCACAGTC
TCAACTCCGGTATCACCTTGGTGTGTTTGTAGCGGATTTCTGTAAGTCCT
TG
Run BLAST on NCBI

protein sequence of TCONS_00061711-protein

>TCONS_00061711-protein ID=TCONS_00061711-protein|Name=TCONS_00061711-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
RTYRNPLQTHQGDTGVETVNLLDTPQISCNVTTSEADVTDIDTENSSDLS
RMSIDITVSKPGDFQQIECLPSSSNVSHPAIANKVDETNVSGCSLNTNNI
SIQSSEGDQRGLTLAQDCAPGEQEIFIIPTDHCNESDLSNDTNEGDEIRS
Run BLAST on NCBI

transcript from alignment at scaffold_36:265533..265984

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061711 ID=TCONS_00061711|Name=TCONS_00061711|organism=Clytia hemisphaerica|type=transcript|length=452bp|location=Sequence derived from alignment at scaffold_36:265533..265984 (Clytia hemisphaerica)
CAAGGACTTACAGAAATCCGCTACAAACACACCAAGGTGATACCGGAGTT
GAGACTGTGAATCTTTTGGATACGCCTCAAATATCATGCAATGTAACCAC
AAGCGAAGCAGATGTCACTGATATTGATACTGAAAATTCTTCTGATTTGT
CTCGTATGTCAATCGATATAACAGTAAGCAAACCAGGAGACTTTCAACAG
ATAGAATGTCTTCCTTCTTCTAGCAACGTGTCACATCCTGCAATAGCCAA
CAAGGTAGACGAGACAAATGTATCTGGTTGTTCCCTAAATACGAATAATA
TTTCAATACAATCATCAGAAGGTGACCAACGAGGATTAACTCTAGCACAA
GATTGTGCTCCTGGAGAACAAGAAATCTTTATCATTCCGACAGACCATTG
TAATGAAAGTGACTTAAGCAATGATACAAATGAAGGAGATGAAATACGAA
GC

Coding sequence (CDS) from alignment at scaffold_36:265533..265984

>TCONS_00061711 ID=TCONS_00061711|Name=TCONS_00061711|organism=Clytia hemisphaerica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_36:265533..265984 (Clytia hemisphaerica)
AGGACTTACAGAAATCCGCTACAAACACACCAAGGTGATACCGGAGTTGA
GACTGTGAATCTTTTGGATACGCCTCAAATATCATGCAATGTAACCACAA
GCGAAGCAGATGTCACTGATATTGATACTGAAAATTCTTCTGATTTGTCT
CGTATGTCAATCGATATAACAGTAAGCAAACCAGGAGACTTTCAACAGAT
AGAATGTCTTCCTTCTTCTAGCAACGTGTCACATCCTGCAATAGCCAACA
AGGTAGACGAGACAAATGTATCTGGTTGTTCCCTAAATACGAATAATATT
TCAATACAATCATCAGAAGGTGACCAACGAGGATTAACTCTAGCACAAGA
TTGTGCTCCTGGAGAACAAGAAATCTTTATCATTCCGACAGACCATTGTA
ATGAAAGTGACTTAAGCAATGATACAAATGAAGGAGATGAAATACGAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038701XLOC_038701Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061711-exon-scaffold_36-1491911889:265533..265984TCONS_00061711-exon-scaffold_36-1491911889:265533..265984Clytia hemisphaericaexon
TCONS_00061711-exon-scaffold_36-1510915933:265533..265984TCONS_00061711-exon-scaffold_36-1510915933:265533..265984Clytia hemisphaericaexon
TCONS_00061711-exon-scaffold_36-1575043694:265533..265984TCONS_00061711-exon-scaffold_36-1575043694:265533..265984Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061711-proteinTCONS_00061711-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:265533..265984 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.142372	0.165307	0	0	0	0.187705	0.175727	0	0	0	0.194469	0.0970993	0.100839	0	0.177935	1.97282	1.57272	1.7072	0.324811	0.28232	0.206559	0.502199	3.04381	2.66479	2.09847	0	0.213652	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061711 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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