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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061754 ID=TCONS_00061754|Name=TCONS_00061754|organism=Clytia hemisphaerica|type=transcript|length=1047bp
CTTCCAGAAAACCAAAGAATCCTGCTCTCTAACAAAGAACAAAGTAGATT
TGACATACCTGTTGCTTTATTGTAGGCTCCAAAGTGACAATACTTgttga
aacttgaaaaaaattcaagatctTGTAACCAAAACAtcagccaaaatcaa
aacaaacaaaaaatcttaatttgaaTCATTATTTCATGCAACTGAGACAC
AACTTTCCCTTGATGCATTCCATAGATACAACAGAACATAAATTTACACA
TACAAAGCTTTTAACTCTAAAATTATAacttccaaaaaccaaaataaact
ccaaaaaagagaaaatctctACTTCGATTCCTACTTCGCTtcggcagcca
tgttgaattcAAAATGTGAACAATCAAGCGAGCCTGTATCAAACTAACAC
GTGCATTTTTAATATCGGTatcaataatgaaaatatttgttattAGTTTG
TTACAGGCTATCAAAAATCTAAACCGTAACGGGGAGAGTCCCTTCACAAA
TTCATCATCATAagcactcgccagctaaaataGCTTGTTCGCCGAAATTC
GGCGAAAAGCGGCATATTCTGGGAAAGAGGATCTACCGAGTATTAAgcag
cctctataagaaacttttttcgctagaggatgagcagaagcctagtaGTT
CCCCTAATGCTCCCATGGTAGAGATCCAAAATCTTCCATGATTTTACTTT
CTATATCTTTTCTGATTTGCTCCTCTACCATTGaaactttgacctttttg
tGATGTAATGTCAAAACACTATTTTGTTGAACACCGCTTTCCTTTAAAGT
TAAATGGTCACGGGCAAGTGGTCTGCCATTATAACAAAGACACTGTTCTT
CAATTGGAATATTCTCTCGAGACTGAATCCTGAATTTCATAAATCCAACA
GTTTCATCTGGAGCGCCATAATTGCAAGGAATACAAATATGATGACAGGC
CCGATCAGATCTTTCAATACATATTTTATAATTTGGTTTTGGTTGTATTG
ATGGTCTTCTTTTTGCTGATATGGTGAGCCAGTTGCATCCTTTTTCG Run BLAST on NCBI protein sequence of TCONS_00061754-protein >TCONS_00061754-protein ID=TCONS_00061754-protein|Name=TCONS_00061754-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
EKGCNWLTISAKRRPSIQPKPNYKICIERSDRACHHICIPCNYGAPDETV
GFMKFRIQSRENIPIEEQCLCYNGRPLARDHLTLKESGVQQNSVLTLHHK
KVKVSMVEEQIRKDIESKIMEDFGSLPWEH Run BLAST on NCBI transcript from alignment at scaffold_36:1204763..1205809 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061754 ID=TCONS_00061754|Name=TCONS_00061754|organism=Clytia hemisphaerica|type=transcript|length=1047bp|location=Sequence derived from alignment at scaffold_36:1204763..1205809 (Clytia hemisphaerica)
CGAAAAAGGATGCAACTGGCTCACCATATCAGCAAAAAGAAGACCATCAA
TACAACCAAAACCAAATTATAAAATATGTATTGAAAGATCTGATCGGGCC
TGTCATCATATTTGTATTCCTTGCAATTATGGCGCTCCAGATGAAACTGT
TGGATTTATGAAATTCAGGATTCAGTCTCGAGAGAATATTCCAATTGAAG
AACAGTGTCTTTGTTATAATGGCAGACCACTTGCCCGTGACCATTTAACT
TTAAAGGAAAGCGGTGTTCAACAAAATAGTGTTTTGACATTACATCacaa
aaaggtcaaagtttCAATGGTAGAGGAGCAAATCAGAAAAGATATAGAAA
GTAAAATCATGGAAGATTTTGGATCTCTACCATGGGAGCATTAGGGGAAC
tactaggcttctgctcatcctctagcgaaaaaagtttcttatagaggctg
cTTAATACTCGGTAGATCCTCTTTCCCAGAATATGCCGCTTTTCGCCGAA
TTTCGGCGAACAAGCtattttagctggcgagtgctTATGATGATGAATTT
GTGAAGGGACTCTCCCCGTTACGGTTTAGATTTTTGATAGCCTGTAACAA
ACTaataacaaatattttcattattgatACCGATATTAAAAATGCACGTG
TTAGTTTGATACAGGCTCGCTTGATTGTTCACATTTTgaattcaacatgg
ctgccgaAGCGAAGTAGGAATCGAAGTagagattttctcttttttggagt
ttattttggtttttggaagtTATAATTTTAGAGTTAAAAGCTTTGTATGT
GTAAATTTATGTTCTGTTGTATCTATGGAATGCATCAAGGGAAAGTTGTG
TCTCAGTTGCATGAAATAATGAttcaaattaagattttttgtttgttttg
attttggctgaTGTTTTGGTTACAagatcttgaatttttttcaagtttca
acAAGTATTGTCACTTTGGAGCCTACAATAAAGCAACAGGTATGTCAAAT
CTACTTTGTTCTTTGTTAGAGAGCAGGATTCTTTGGTTTTCTGGAAG Coding sequence (CDS) from alignment at scaffold_36:1204763..1205809 >TCONS_00061754 ID=TCONS_00061754|Name=TCONS_00061754|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at scaffold_36:1204763..1205809 (Clytia hemisphaerica)
GAAAAAGGATGCAACTGGCTCACCATATCAGCAAAAAGAAGACCATCAAT
ACAACCAAAACCAAATTATAAAATATGTATTGAAAGATCTGATCGGGCCT
GTCATCATATTTGTATTCCTTGCAATTATGGCGCTCCAGATGAAACTGTT
GGATTTATGAAATTCAGGATTCAGTCTCGAGAGAATATTCCAATTGAAGA
ACAGTGTCTTTGTTATAATGGCAGACCACTTGCCCGTGACCATTTAACTT
TAAAGGAAAGCGGTGTTCAACAAAATAGTGTTTTGACATTACATCacaaa
aaggtcaaagtttCAATGGTAGAGGAGCAAATCAGAAAAGATATAGAAAG
TAAAATCATGGAAGATTTTGGATCTCTACCATGGGAGCATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061754-exon-scaffold_36-1491911889:1204763..1205809 | TCONS_00061754-exon-scaffold_36-1491911889:1204763..1205809 | Clytia hemisphaerica | exon |
| TCONS_00061754-exon-scaffold_36-1510915933:1204763..1205809 | TCONS_00061754-exon-scaffold_36-1510915933:1204763..1205809 | Clytia hemisphaerica | exon |
| TCONS_00061754-exon-scaffold_36-1575043694:1204763..1205809 | TCONS_00061754-exon-scaffold_36-1575043694:1204763..1205809 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:1204763..1205809 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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