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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061779 ID=TCONS_00061779|Name=TCONS_00061779|organism=Clytia hemisphaerica|type=transcript|length=1500bp
CTTAgcttaaaaataaataacagaCAAGACAGGTCTGTTAATTTGCAGCA
AAGTAAGTTTCCCTTCATTGATGCAAGTTATGCCCCCTTTTcctgctttt
tcaaggaaatttaatttcaaatcaaattccATCTCTCACTTTTTAGAATC
GATTCAGAGAGGAATTACGTACTTGGCAAATGCATTTGAGGAAGCTATTG
TATATCCCTTTCACAATCTTGCTGAGCCCGGTATTTCAGTTGGCAAATTA
GCACGCTCTGTAAAGACAAAACTGTTGTCATTAAAACTGACAAACGAAGA
AAATGCGGAGGAAGATTGTGATAAAGCCACCATTGTGTTTAGACAATACA
GCTATCATTTGCTCTGTGTCTTTGAGAACGAATTGGTTAAAGATGCCAAA
ACAATTATAAAGAAAACTGCCAAATCATTCACAAAGTTTTATAATTATTG
TGTCAGTGAAGATGAACTGAAAGAATGGGGAGAATTTTTGTGTGGTTTGG
AAATTAACACACATCCAATTTATTCCCAGCAACTGTTTAATTTTGTGATG
AACTCATTTTTAAGACAATGTATCTCTGCTTTGATAGCAGAAAATGAGAA
AACCATCAGTCTCGAAGAAATTAAATTAAGCAAAAGTGAGGAAGAGACAT
TATATTATGTAGCTGGGTATATTGTCTTTTCattaaagaaaaatgtgaaa
CATAAGCTTTCCCCAAACAGTAAGGCAACAATTTCTCTGTTGGAAACACG
GGGTTGTAAAGGTGACAATGAGTTTGGCGATATAACTATCGATGAGTACA
CCCGAGCCTGGTTGGAGAAAGTTAATCGTGGTGGTTTGTTTCACGTCAAT
CAccaattttatgactttatcGTTTCAATCGAAAAAACTGCAAGAACTGT
ATtgaacatttcttttttttcgaccTATACAGGTCAAAACTTAAAGGAGG
TGCTgcgtaaaaaatttgaaagtaacTTGGCTATTCTAAATGCCTGGAAG
CAGTTATCGTCAACCATAACaaccgcggctttcttatactatggtgacAG
CTTTTCAATGTGATGATTTCACTCTAAAATCAAAAGCTGATATATATTCA
TCTCAAATCTGAACCAAATTAGTTTATAAGGTAGTTTAAAACTACATATC
ATGAACAATTAaagttttcaatgtttttaatttcaaggGCACAAGATTAT
TCAATGACATATTTGAAAACGAGCAAGATCCTGATATAATGCATGATGCC
GTTGAAAATGAGGTTAAAAAGAGTGATAATGGTTTTAGTCAAgAACCTCA
GCCAGCTCCAACTCCAATACATATTTCAGGCAAGTCTTCTTTGATGTGGT
GAAAAGGTATGTTGACCGAAAAATACCTAAACGAGGGCACGTGTTAAACA
GACTTATGACATCCGGACTGAAGTTAGATGGAAAGATGGGGAGTATAACT
GATGACGAAGTTTTCCAACAGTTTGGAAGAAAGCTGGTTGAATGCAGAAG Run BLAST on NCBI protein sequence of TCONS_00061779-protein >TCONS_00061779-protein ID=TCONS_00061779-protein|Name=TCONS_00061779-protein|organism=Clytia hemisphaerica|type=polypeptide|length=330bp
MQVMPPFPAFSRKFNFKSNSISHFLESIQRGITYLANAFEEAIVYPFHNL
AEPGISVGKLARSVKTKLLSLKLTNEENAEEDCDKATIVFRQYSYHLLCV
FENELVKDAKTIIKKTAKSFTKFYNYCVSEDELKEWGEFLCGLEINTHPI
YSQQLFNFVMNSFLRQCISALIAENEKTISLEEIKLSKSEEETLYYVAGY
IVFSLKKNVKHKLSPNSKATISLLETRGCKGDNEFGDITIDEYTRAWLEK
VNRGGLFHVNHQFYDFIVSIEKTARTVLNISFFSTYTGQNLKEVLRKKFE
SNLAILNAWKQLSSTITTAAFLYYGDSFSM Run BLAST on NCBI transcript from alignment at scaffold_360:29023..30872+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061779 ID=TCONS_00061779|Name=TCONS_00061779|organism=Clytia hemisphaerica|type=transcript|length=1850bp|location=Sequence derived from alignment at scaffold_360:29023..30872+ (Clytia hemisphaerica)
CTTAgcttaaaaataaataacagaCAAGACAGGTCTGTTAATTTGCAGCA
AAGTAAGTTTCCCTTCATTGATGCAAGTTATGCCCCCTTTTcctgctttt
tcaaggaaatttaatttcaaatcaaattccATCTCTCACTTTTTAGAATC
GATTCAGAGAGGAATTACGTACTTGGCAAATGCATTTGAGGAAGCTATTG
TATATCCCTTTCACAATCTTGCTGAGCCCGGTATTTCAGTTGGCAAATTA
GCACGCTCTGTAAAGACAAAACTGTTGTCATTAAAACTGACAAACGAAGA
AAATGCGGAGGAAGATTGTGATAAAGCCACCATTGTGTTTAGACAATACA
GCTATCATTTGCTCTGTGTCTTTGAGAACGAATTGGTTAAAGATGCCAAA
ACAATTATAAAGAAAACTGCCAAATCATTCACAAAGTTTTATAATTATTG
TGTCAGTGAAGATGAACTGAAAGAATGGGGAGAATTTTTGTGTGGTTTGG
AAATTAACACACATCCAATTTATTCCCAGCAACTGTTTAATTTTGTGATG
AACTCATTTTTAAGACAATGTATCTCTGCTTTGATAGCAGAAAATGAGAA
AACCATCAGTCTCGAAGAAATTAAATTAAGCAAAAGTGAGGAAGAGACAT
TATATTATGTAGCTGGGTATATTGTCTTTTCattaaagaaaaatgtgaaa
CATAAGCTTTCCCCAAACAGTAAGGCAACAATTTCTCTGTTGGAAACACG
GGGTTGTAAAGGTGACAATGAGTTTGGCGATATAACTATCGATGAGTACA
CCCGAGCCTGGTTGGAGAAAGTTAATCGTGGTGGTTTGTTTCACGTCAAT
CAccaattttatgactttatcGTTTCAATCGAAAAAACTGCAAGAACTGT
ATtgaacatttcttttttttcgaccTATACAGGTCAAAACTTAAAGGAGG
TGCTgcgtaaaaaatttgaaagtaacTTGGCTATTCTAAATGCCTGGAAG
CAGTTATCGTCAACCATAACaaccgcggctttcttatactatggtgacAG
CTTTTCAATGTGATGATTTCACTCTAAAATCAAAAGCTGATATATATTCA
TCTCAAATCTGAACCAAATTAGTTTATAAGGTAGTTTAAAACTACATATC
ATGAACAATTAaagttttcaatgtttttaatttcaaggGCACAAGATTAT
TCAATGACATATTTGAAAACGAGCAAGATCCTGATATAATGCATGATGCC
GTTGAAAATGAGGTTAAAAAGAGTGATAATGGTTTTAGTCAAggtattaa
attttttaaacggattcttgtttttattgattttagacCTGAGGATGATC
GTAAGATCGAAATATATATATTGTCCGAAATAAAATGTCACCATTGTTGg
ttcattttgaatatcttcttaaggtattaaaatttaaaacatctttctta
taaaattagCAAAAAGCAAACCAGAGGTAACCTGATGTGATATTTTTCTA
ATATGTTGAAAGCTTCGTTGGTTTCCTTCTTTTTCTAGAGGAAGAACATG
TATTGCGTGGATGAAATTCTATAGCTAGTGTACCAATTTTCCAAAGCTAG
ACTTAAAGGTTTATAATTGAATTATTATTTCTATTACCAATAGAACCTCA
GCCAGCTCCAACTCCAATACATATTTCAGGCAAGTCTTCTTTGATGTGGT
GAAAAGGTATGTTGACCGAAAAATACCTAAACGAGGGCACGTGTTAAACA
GACTTATGACATCCGGACTGAAGTTAGATGGAAAGATGGGGAGTATAACT
GATGACGAAGTTTTCCAACAGTTTGGAAGAAAGCTGGTTGAATGCAGAAG
Coding sequence (CDS) from alignment at scaffold_360:29023..30872+ >TCONS_00061779 ID=TCONS_00061779|Name=TCONS_00061779|organism=Clytia hemisphaerica|type=CDS|length=993bp|location=Sequence derived from alignment at scaffold_360:29023..30872+ (Clytia hemisphaerica)
ATGCAAGTTATGCCCCCTTTTcctgctttttcaaggaaatttaatttcaa
atcaaattccATCTCTCACTTTTTAGAATCGATTCAGAGAGGAATTACGT
ACTTGGCAAATGCATTTGAGGAAGCTATTGTATATCCCTTTCACAATCTT
GCTGAGCCCGGTATTTCAGTTGGCAAATTAGCACGCTCTGTAAAGACAAA
ACTGTTGTCATTAAAACTGACAAACGAAGAAAATGCGGAGGAAGATTGTG
ATAAAGCCACCATTGTGTTTAGACAATACAGCTATCATTTGCTCTGTGTC
TTTGAGAACGAATTGGTTAAAGATGCCAAAACAATTATAAAGAAAACTGC
CAAATCATTCACAAAGTTTTATAATTATTGTGTCAGTGAAGATGAACTGA
AAGAATGGGGAGAATTTTTGTGTGGTTTGGAAATTAACACACATCCAATT
TATTCCCAGCAACTGTTTAATTTTGTGATGAACTCATTTTTAAGACAATG
TATCTCTGCTTTGATAGCAGAAAATGAGAAAACCATCAGTCTCGAAGAAA
TTAAATTAAGCAAAAGTGAGGAAGAGACATTATATTATGTAGCTGGGTAT
ATTGTCTTTTCattaaagaaaaatgtgaaaCATAAGCTTTCCCCAAACAG
TAAGGCAACAATTTCTCTGTTGGAAACACGGGGTTGTAAAGGTGACAATG
AGTTTGGCGATATAACTATCGATGAGTACACCCGAGCCTGGTTGGAGAAA
GTTAATCGTGGTGGTTTGTTTCACGTCAATCAccaattttatgactttat
cGTTTCAATCGAAAAAACTGCAAGAACTGTATtgaacatttctttttttt
cgaccTATACAGGTCAAAACTTAAAGGAGGTGCTgcgtaaaaaatttgaa
agtaacTTGGCTATTCTAAATGCCTGGAAGCAGTTATCGTCAACCATAAC
aaccgcggctttcttatactatggtgacAGCTTTTCAATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061779-exon-scaffold_360-1491911889:29023..30315 | TCONS_00061779-exon-scaffold_360-1491911889:29023..30315 | Clytia hemisphaerica | exon |
| TCONS_00061779-exon-scaffold_360-1510915933:29023..30315 | TCONS_00061779-exon-scaffold_360-1510915933:29023..30315 | Clytia hemisphaerica | exon |
| TCONS_00061779-exon-scaffold_360-1575043694:29023..30315 | TCONS_00061779-exon-scaffold_360-1575043694:29023..30315 | Clytia hemisphaerica | exon |
| TCONS_00061779-exon-scaffold_360-1491911889:30666..30872 | TCONS_00061779-exon-scaffold_360-1491911889:30666..30872 | Clytia hemisphaerica | exon |
| TCONS_00061779-exon-scaffold_360-1510915933:30666..30872 | TCONS_00061779-exon-scaffold_360-1510915933:30666..30872 | Clytia hemisphaerica | exon |
| TCONS_00061779-exon-scaffold_360-1575043694:30666..30872 | TCONS_00061779-exon-scaffold_360-1575043694:30666..30872 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_360 | supercontig | scaffold_360:29023..30872 + |
Blast
The following BLAST results are available for this feature:
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