Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061818 ID=TCONS_00061818|Name=TCONS_00061818|organism=Clytia hemisphaerica|type=transcript|length=2050bpRun BLAST on NCBI transcript from alignment at scaffold_360:269728..290439- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061818 ID=TCONS_00061818|Name=TCONS_00061818|organism=Clytia hemisphaerica|type=transcript|length=20712bp|location=Sequence derived from alignment at scaffold_360:269728..290439- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00061818 vs. Swiss-Prot (Human)
Match: AKP13 (A-kinase anchor protein 13 OS=Homo sapiens GN=AKAP13 PE=1 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 1.427e-17 Identity = 65/223 (29.15%), Postives = 104/223 (46.64%), Query Frame = 1 Query: 82 FSFTPQQAHIFGGQSLFLSFANLDAPLSCEAFYYVTFQGSKLRHVTSAKILNPFTLQAVIPDHDQSEEVKLIVSQLRTDNTKQDLAEDLFTFTSDSSEFLAQQLVTNALIPETLKHLEDVYKSLLNVSLVEKRALDARLSLSFRHLTRNEPWCVANDDSDNTDDC--WNLLHICAKYSLCQLAELLLTKAGSKVALQRMNDQGWTPLEIAAQTNHKRMIEILS 744 PQQA ++G + + A D + +Y+ F GS LRH TS + ++ TL+ + P HD E VK+ + + +AE+ F F D + AQ L T+A + L + +S V +LD +L L+FRHL W V D D L+H + L +L LL K G + AL N +G TP+ +A + + ++ ++L+ Sbjct: 1 MKLNPQQAPLYGDCVVTVLLAEEDKAED-DVVFYLVFLGSTLRHCTSTRKVSSDTLETIAPGHDCCETVKVQLCASKEGLPVFVVAEEDFHFVQDEAYDAAQFLATSAGNQQALNFTRFLDQSGPPSGDV--NSLDKKLVLAFRHLKLPTEWNVLGTDQSLHDAGPRETLMHFAVRLGLLRLTWFLLQKPGGRGALSIHNQEGATPVSLALERGYHKLHQLLT 220 The following BLAST results are available for this feature:
BLAST of TCONS_00061818 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|