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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061827 ID=TCONS_00061827|Name=TCONS_00061827|organism=Clytia hemisphaerica|type=transcript|length=1337bp
GttttttcagttaaaaaatTCTTCGAAAGTTTAATTATAATTGTTGTTTG
TTTCTTTTAGACAgtagaaaaatggaaaatgataaaaatgaaaaagatca
agGATCAAGCCAAATACAATTGTCACTGTTAAGTTACGCAGTGAAGCACA
ACTGCCGGTTTTCCGTCATTCAAGAATTGCTAACCCACGACAAAGTGTGG
GGAACTATAAATGATGGATTAACTCTTCAAACTGCGGACGGTGGATTGGA
TGTAAACCCACTTATTCTGTCTTGCATTAATCAAAATTATGAAGTAATGA
AACTATTGATTGACCAGGGAGCTGTGGTAGATGTGAAGGATGCGAGCGGT
ATTCCGCTTTTACACATTGCTTGCAATAACGGATTGAAATTTGTGAAGTT
GTTAATCAAAAATGGTGCCAACCCATTCGTGACTTGTTCTTTAGGGAATA
CAATACTTCACGAAGCAGTGAAAGTAAGGGCTTCTTTTAATATGGTTTAT
TTTCTTTTGCAATGCGGAGTGGATATTAACACACAAAATTCTATAGGTAA
TACCGTACTCGATTTGACGGACATTGAACCGACTATAAAAGGTCTTTTGC
AAGCTCTGAAACgagagaaatcaatgaaaaaaggcatcaaaacaCTTCCA
TTAAAGCGTAAACGTTCAATTTCATCTCCACAAGAGAAACTGAAAAACGA
GGTACAACAGCTAGATAAGAAGATGAAAACAAATGAAGATAACCTGAAAA
CTTCGCACCAAAAGCTCTCTATGTGTGAGAAAAAGAAGGTGGAACTCCTC
AAAGATATTACGAATAAACAGAAAGAGATGAATGGGTTTTTAATGCGAGA
TATTGAAAATGATATGTTGTTGTTTGATATGCCTTTAGAATGCCCTAGTT
GTTTCTTGGACTTTATGGTGGGAGAGAACATCTACCAGTGTAATGACGGC
CACCTACTCTGCAGTTTTTGTAACAAAAGACTTAAAACATGTAAGAAATG
CAGCACTCGGTTACGTGGTATACGAAACAGGGCTATTGAAGGGATTTTTG
AGGCTGTATGCAAGTAACTATTCGCATGTTTTGGAGATCCTGGTTGCATG
TTTCGTGCAGACATTCGCTATTTTTTTGATACATGGAATCGagcaatttt
ttaataaataatgaATACAgtacgaaaaaagatttttttttgccgtATAA
TCATTTTGCCTGGAAAAGCTTGTGATGTCATCAAAAAACGTTGAACCCTC
ATCTGCcctcataacttttgataggaacaATTTCAAGGCATTTTTTACCC
CAATTTTTATCAGAGCTTCATACTTTTTTCCACTGGC Run BLAST on NCBI protein sequence of TCONS_00061827-protein >TCONS_00061827-protein ID=TCONS_00061827-protein|Name=TCONS_00061827-protein|organism=Clytia hemisphaerica|type=polypeptide|length=331bp
MENDKNEKDQGSSQIQLSLLSYAVKHNCRFSVIQELLTHDKVWGTINDGL
TLQTADGGLDVNPLILSCINQNYEVMKLLIDQGAVVDVKDASGIPLLHIA
CNNGLKFVKLLIKNGANPFVTCSLGNTILHEAVKVRASFNMVYFLLQCGV
DINTQNSIGNTVLDLTDIEPTIKGLLQALKREKSMKKGIKTLPLKRKRSI
SSPQEKLKNEVQQLDKKMKTNEDNLKTSHQKLSMCEKKKVELLKDITNKQ
KEMNGFLMRDIENDMLLFDMPLECPSCFLDFMVGENIYQCNDGHLLCSFC
NKRLKTCKKCSTRLRGIRNRAIEGIFEAVCK Run BLAST on NCBI transcript from alignment at scaffold_360:20246..21582 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061827 ID=TCONS_00061827|Name=TCONS_00061827|organism=Clytia hemisphaerica|type=transcript|length=1337bp|location=Sequence derived from alignment at scaffold_360:20246..21582 (Clytia hemisphaerica)
GCCAGTGGAAAAAAGTATGAAGCTCTGATAAAAATTGGGGTAAAAAATGC
CTTGAAATtgttcctatcaaaagttatgaggGCAGATGAGGGTTCAACGT
TTTTTGATGACATCACAAGCTTTTCCAGGCAAAATGATTATacggcaaaa
aaaaatcttttttcgtacTGTATtcattatttattaaaaaattgctCGAT
TCCATGTATCAAAAAAATAGCGAATGTCTGCACGAAACATGCAACCAGGA
TCTCCAAAACATGCGAATAGTTACTTGCATACAGCCTCAAAAATCCCTTC
AATAGCCCTGTTTCGTATACCACGTAACCGAGTGCTGCATTTCTTACATG
TTTTAAGTCTTTTGTTACAAAAACTGCAGAGTAGGTGGCCGTCATTACAC
TGGTAGATGTTCTCTCCCACCATAAAGTCCAAGAAACAACTAGGGCATTC
TAAAGGCATATCAAACAACAACATATCATTTTCAATATCTCGCATTAAAA
ACCCATTCATCTCTTTCTGTTTATTCGTAATATCTTTGAGGAGTTCCACC
TTCTTTTTCTCACACATAGAGAGCTTTTGGTGCGAAGTTTTCAGGTTATC
TTCATTTGTTTTCATCTTCTTATCTAGCTGTTGTACCTCGTTTTTCAGTT
TCTCTTGTGGAGATGAAATTGAACGTTTACGCTTTAATGGAAGtgttttg
atgccttttttcattgatttctctcGTTTCAGAGCTTGCAAAAGACCTTT
TATAGTCGGTTCAATGTCCGTCAAATCGAGTACGGTATTACCTATAGAAT
TTTGTGTGTTAATATCCACTCCGCATTGCAAAAGAAAATAAACCATATTA
AAAGAAGCCCTTACTTTCACTGCTTCGTGAAGTATTGTATTCCCTAAAGA
ACAAGTCACGAATGGGTTGGCACCATTTTTGATTAACAACTTCACAAATT
TCAATCCGTTATTGCAAGCAATGTGTAAAAGCGGAATACCGCTCGCATCC
TTCACATCTACCACAGCTCCCTGGTCAATCAATAGTTTCATTACTTCATA
ATTTTGATTAATGCAAGACAGAATAAGTGGGTTTACATCCAATCCACCGT
CCGCAGTTTGAAGAGTTAATCCATCATTTATAGTTCCCCACACTTTGTCG
TGGGTTAGCAATTCTTGAATGACGGAAAACCGGCAGTTGTGCTTCACTGC
GTAACTTAACAGTGACAATTGTATTTGGCTTGATCcttgatctttttcat
ttttatcattttccatttttctacTGTCTAAAAGAAACAAACAACAATTA
TAATTAAACTTTCGAAGAattttttaactgaaaaaaC Coding sequence (CDS) from alignment at scaffold_360:20246..21582 >TCONS_00061827 ID=TCONS_00061827|Name=TCONS_00061827|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at scaffold_360:20246..21582 (Clytia hemisphaerica)
TTACTTGCATACAGCCTCAAAAATCCCTTCAATAGCCCTGTTTCGTATAC
CACGTAACCGAGTGCTGCATTTCTTACATGTTTTAAGTCTTTTGTTACAA
AAACTGCAGAGTAGGTGGCCGTCATTACACTGGTAGATGTTCTCTCCCAC
CATAAAGTCCAAGAAACAACTAGGGCATTCTAAAGGCATATCAAACAACA
ACATATCATTTTCAATATCTCGCATTAAAAACCCATTCATCTCTTTCTGT
TTATTCGTAATATCTTTGAGGAGTTCCACCTTCTTTTTCTCACACATAGA
GAGCTTTTGGTGCGAAGTTTTCAGGTTATCTTCATTTGTTTTCATCTTCT
TATCTAGCTGTTGTACCTCGTTTTTCAGTTTCTCTTGTGGAGATGAAATT
GAACGTTTACGCTTTAATGGAAGtgttttgatgccttttttcattgattt
ctctcGTTTCAGAGCTTGCAAAAGACCTTTTATAGTCGGTTCAATGTCCG
TCAAATCGAGTACGGTATTACCTATAGAATTTTGTGTGTTAATATCCACT
CCGCATTGCAAAAGAAAATAAACCATATTAAAAGAAGCCCTTACTTTCAC
TGCTTCGTGAAGTATTGTATTCCCTAAAGAACAAGTCACGAATGGGTTGG
CACCATTTTTGATTAACAACTTCACAAATTTCAATCCGTTATTGCAAGCA
ATGTGTAAAAGCGGAATACCGCTCGCATCCTTCACATCTACCACAGCTCC
CTGGTCAATCAATAGTTTCATTACTTCATAATTTTGATTAATGCAAGACA
GAATAAGTGGGTTTACATCCAATCCACCGTCCGCAGTTTGAAGAGTTAAT
CCATCATTTATAGTTCCCCACACTTTGTCGTGGGTTAGCAATTCTTGAAT
GACGGAAAACCGGCAGTTGTGCTTCACTGCGTAACTTAACAGTGACAATT
GTATTTGGCTTGATCcttgatctttttcatttttatcattttccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061827-exon-scaffold_360-1491911889:20246..21582 | TCONS_00061827-exon-scaffold_360-1491911889:20246..21582 | Clytia hemisphaerica | exon |
| TCONS_00061827-exon-scaffold_360-1510915933:20246..21582 | TCONS_00061827-exon-scaffold_360-1510915933:20246..21582 | Clytia hemisphaerica | exon |
| TCONS_00061827-exon-scaffold_360-1575043694:20246..21582 | TCONS_00061827-exon-scaffold_360-1575043694:20246..21582 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_360 | supercontig | scaffold_360:20246..21582 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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