TCONS_00061837 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061837
Unique NameTCONS_00061837
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length518

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061837 ID=TCONS_00061837|Name=TCONS_00061837|organism=Clytia hemisphaerica|type=transcript|length=518bp
NTTCAGGAAAAAGTTGACGAACGAAAAACCAAAGAATTTTTGGAAGCAAA
AGAAAAGGGGCAAGATAATCCTGAAGCATGATGAAAAATATGTTTAATAT
AATGAGTTTCGAATTTTCACATCTTTTTTGTAGCTTTTAAGCCCTCCTGC
ACGTTCTAAAAGGCTGAGAGGTGACCAAATTAGGTCTTTTTCCCAAATAA
ACATTAAATTGTAAAAGTGGGAGGAGAGGTTTGGATTTGATAGAATGTGC
ACTTCGTCTACCAGGATTCGAACTGTTCTTGTATCCTAAAAATGCACTTT
TTTGTAAGTTAATTTACCTGTTTATTTTCACCATCGCTTAGGCGAGACCA
ATATAATTTGTTGTTCTACGGGCAGATCGTCAGCAAAATATGGGTAGGTC
GGTCGGTAAAATAAAAATAAATTTTTCATTTATCAGGATTGGTAAAGTAT
CGAAAATGTTTTTCAAAAAATATCTGGATCAAAATTTCACTTTTTTTATC
TTCGATGAATATCATGAT
Run BLAST on NCBI

transcript from alignment at scaffold_360:71031..71548

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061837 ID=TCONS_00061837|Name=TCONS_00061837|organism=Clytia hemisphaerica|type=transcript|length=518bp|location=Sequence derived from alignment at scaffold_360:71031..71548 (Clytia hemisphaerica)
ATCATGATATTCATCGAAGATAAAAAAAGTGAAATTTTGATCCAGATATT
TTTTGAAAAACATTTTCGATACTTTACCAATCCTGATAAATGAAAAATTT
ATTTTTATTTTACCGACCGACCTACCCATATTTTGCTGACGATCTGCCCG
TAGAACAACAAATTATATTGGTCTCGCCTAAGCGATGGTGAAAATAAACA
GGTAAATTAACTTACAAAAAAGTGCATTTTTAGGATACAAGAACAGTTCG
AATCCTGGTAGACGAAGTGCACATTCTATCAAATCCAAACCTCTCCTCCC
ACTTTTACAATTTAATGTTTATTTGGGAAAAAGACCTAATTTGGTCACCT
CTCAGCCTTTTAGAACGTGCAGGAGGGCTTAAAAGCTACAAAAAAGATGT
GAAAATTCGAAACTCATTATATTAAACATATTTTTCATCATGCTTCAGGA
TTATCTTGCCCCTTTTCTTTTGCTTCCAAAAATTCTTTGGTTTTTCGTTC
GTCAACTTTTTCCTGAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038790XLOC_038790Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061837-exon-scaffold_360-1491911889:71031..71548TCONS_00061837-exon-scaffold_360-1491911889:71031..71548Clytia hemisphaericaexon
TCONS_00061837-exon-scaffold_360-1510915933:71031..71548TCONS_00061837-exon-scaffold_360-1510915933:71031..71548Clytia hemisphaericaexon
TCONS_00061837-exon-scaffold_360-1575043694:71031..71548TCONS_00061837-exon-scaffold_360-1575043694:71031..71548Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_360supercontigscaffold_360:71031..71548 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.803703	0.335887	0.649995	0	0	0	0	0	0.193504	0.119843	0.232645	0.076466	14.3556	14.7498	4.88967	3.42828	0	0.441715	13.1815	15.5815	1.2211	0.812197	0.131644	0.598419	1.35599	2.20034	0.944602	0	0.764612	0.129836
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061837 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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