TCONS_00061838 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061838
Unique NameTCONS_00061838
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length540

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061838 ID=TCONS_00061838|Name=TCONS_00061838|organism=Clytia hemisphaerica|type=transcript|length=540bp
GGCGGTCAAGGGCCATTTTCAAGCTGAAGGGACGAGAAGCcctgttcgag
ttaagaattcgaattatagaagttcgagttaaaaGAGACTCTACTTGATG
TGGTACTGACACATCATTCAATCATCATTGCTATTTGTCGACAgagattt
ttagattttcatatAATAGATGATAGAGTCGCACCGATTGGACCCCCCGA
CACACCGGCCtggatattttacgtggatgaCCCGGCAATCCAGGAGTTTT
TGACAGTtgttcgattgttttcacaTTTCACATtcacggaacattggaag
gaacGGGCATTCCAAACATGAACCCTTTGTTTGGTTAACTTAATCTCCGA
ACAGATTCTGATACTCCGCGCATGACACGTATCACTCTAAGGGCCATAGC
TCCGTAAGAGAATTTGCTCAGGTGGTCGCGccgctttgatctttttcatc
cagatttgggatgaatatcaaatgagcttttgagcgtGGTGATTGACCAA
AATAAAAATCCATCATAAAGACTAATATTAGATCTTAGCC
Run BLAST on NCBI

transcript from alignment at scaffold_360:94755..95294

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061838 ID=TCONS_00061838|Name=TCONS_00061838|organism=Clytia hemisphaerica|type=transcript|length=540bp|location=Sequence derived from alignment at scaffold_360:94755..95294 (Clytia hemisphaerica)
GGCTAAGATCTAATATTAGTCTTTATGATGGATTTTTATTTTGGTCAATC
ACCacgctcaaaagctcatttgatattcatcccaaatctggatgaaaaag
atcaaagcggCGCGACCACCTGAGCAAATTCTCTTACGGAGCTATGGCCC
TTAGAGTGATACGTGTCATGCGCGGAGTATCAGAATCTGTTCGGAGATTA
AGTTAACCAAACAAAGGGTTCATGTTTGGAATGCCCgttccttccaatgt
tccgtgaATGTGAAAtgtgaaaacaatcgaacaACTGTCAAAAACTCCTG
GATTGCCGGGtcatccacgtaaaatatccaGGCCGGTGTGTCGGGGGGTC
CAATCGGTGCGACTCTATCATCTATTatatgaaaatctaaaaatctcTGT
CGACAAATAGCAATGATGATTGAATGATGTGTCAGTACCACATCAAGTAG
AGTCTCttttaactcgaacttctataattcgaattcttaactcgaacagg
GCTTCTCGTCCCTTCAGCTTGAAAATGGCCCTTGACCGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038791XLOC_038791Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061838-exon-scaffold_360-1491911889:94755..95294TCONS_00061838-exon-scaffold_360-1491911889:94755..95294Clytia hemisphaericaexon
TCONS_00061838-exon-scaffold_360-1510915933:94755..95294TCONS_00061838-exon-scaffold_360-1510915933:94755..95294Clytia hemisphaericaexon
TCONS_00061838-exon-scaffold_360-1575043694:94755..95294TCONS_00061838-exon-scaffold_360-1575043694:94755..95294Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_360supercontigscaffold_360:94755..95294 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.104521	2.42717	1.30604	0.433629	0.11422	0.826808	0.387024	0.451607	0.447511	0.542956	0.428302	0.712844	0.444177	0.608623	0.653146	0.72416	0.412356	0.455754	0.71537	0.207262	0.303286	0	0.111729	0.230156	0	0.14697	0	0.237931	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061838 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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