|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061843 ID=TCONS_00061843|Name=TCONS_00061843|organism=Clytia hemisphaerica|type=transcript|length=810bp
CGAAATTGCAAGGAAACTGCTGAAAATGAGCAACCAAGATTTGATTATAA
ACGTTACTTTCGACCCATTCAGTGCCCTTGATAAAAAAGTCGACCATTCA
TTTAACGAGCTTTGTGAACAAGAAAAATTGACACGAAAACGAGAAAATCT
CATCTCATTATCACTTTCTGAAGCTGttggagaaagaaaaaatgtcACCG
ATTTTTATAACTGTTCCTCGCTACCATCCAAAAATATTGCTGACGTCATG
CTGCTCTTAAAAAACAAATACAAACCGCGAAGAGTTCATTTCCTTTTCGA
TGAAGTTCCGCAAGAGCTGTTCACAAAGACCTACTCAGAAACACTACGCA
GCCGTTTGGAGAGTAAATTTCGAGAATCAGTTGTCGTGATTGCCCTCCAA
AGTGTACAGAAATCTCGAAAAATAACCGAGGAAGGCAAGGTCACCAATTC
ACAGGAGATTGATTTAAAAAGCTCAGGCATGGAACTTTTCAAACTACCAA
CCACAATGAGGATGAGCAGTTGCTTACataaattgaaagaagtttTGGAA
GGTGAAATCGAAAGCTCGCCCTGCTCCTTAAACTTAGAAATTCGATCGAA
AGgaaacGTTTTGCTAACAAAAGACGAATCTAACAAGGCCATAATCGAGG
AAACCCAATCAAATGGAGATGACGAAAACAGACCGGGTAGCTCTCAATCA
ACAACAAAAGTTGAATTTCAGGTTAATGAGCAAAAAGAAGATCGAGAAGC
AAGCGAATCATTTGACCCAACGAAGCTACGCGACCCTGAAAACGTTTTTA
AGTCGCAGCC Run BLAST on NCBI transcript from alignment at scaffold_361:26325..28398+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061843 ID=TCONS_00061843|Name=TCONS_00061843|organism=Clytia hemisphaerica|type=transcript|length=2074bp|location=Sequence derived from alignment at scaffold_361:26325..28398+ (Clytia hemisphaerica)
CGAAATTGCAAGGAAACTGCTGAAAATGAGCAACCAAGATTTGATTATAA
ACGTTACTTTCGACCCATTCAGTGCCCTTGATAAAAAAGTCGACCATTCA
TTTAACGAGCTTTGTGAACAAGAAAAATTGACACGAAAACGAGAAAATCT
CATCTCATTATCACTTTCTGAAGCTGttggagaaagaaaaaatgtcACCG
ATTTTTATAACTGTTCCTCGCTACCATCCAAAAATATTGCTGACGTCATG
CTGCTCTTAAAAAACAAATACAAACCGCGAAGAGTTCATTTCCTTTTCGA
TGAAGTTCCGCAAGAGCTGTTCACAAAGACCTACTCAGAAACACTACGCA
GCCGTTTGGAGAGTAAATTTCGAGAATCAGTTGTCGTGATTGCCCTCCAA
AGTGTACAGAAATCTCGAAAAATAACCGAGGAAGGCAAGGTCACCAATTC
ACAGGAGATTGATTTAAAAAGCTCAGGCATGGAACTTTTCAAACTACCAA
CCACAATGAGGATGAGCAGTTGCTTACataaattgaaagaagtttTGGAA
GGTGAAATCGAAAGCTCGCCCTGCTCCTTAAACTTAGAAATTCGATCGAA
AGGTATTACATACTATTTACGTAACTTTCTTTTATAATCGCGTTCAATTG
CAACAGTGTGCAAGTAAAATATACTCATTTCCATTTATGAccgaaatatt
ttcttacattttgattttaatttttcaggaaacGTTTTGCTAACAAAAGA
CGAATCTAACAAGGCCATAATCGAGGAAACCCAATCAAATGGAGATGACG
AAAACAGACCGGGTAGCTCTCAATCAACAACAAAAGTTGAATTTCAGGTT
AATGAGGTAATTTTGTTAATGAGTGTACTGTTTATAATTAGCTTACNCTA
AAAGTGCACGGcaaacttaaggcttcactttttcttgcgtTAAAAGGTAG
AAGATTCTTCTCTAGCACCTTCGTACGATGATCCAGAAGGCTCCAAACAC
GCACTTCTAGTTTTCAcacacttccagttcttataaaatttgtgtaCTAG
AACTTTCTTAggtcaatggcccagaaggctcaagtgacactgcgcacttc
tgactTGTTATCACAGCGGGAAATTTCCAAGCAAGCGGCCCGCgcaataa
aattttgttttttttggtctttaaaatgaatgtcgagTTACGCAAAGTGA
ATCAAAATTTCCGAGTTGTTCATATCAAGAGTTACAGGTTAAAATTTCCG
ATTTAAGTGCTGGTCAGCAAAATTTTCCCCCAGtggcaaaaatcgggaaa
ttttcgGGCTTAAATCGGGGAAGCAAAAAGtgatagaatatcaactttgt
tttttgcATCCACCTTTTCCACCCCTTCCCTCAAAGTAGAACTAATAGAA
ATGAAACCAATAGTtaggcaaagaaaaataaagcacCAAAATCTAAGAGG
TTCCGTACCATTTACTTCCTGGTATTTCTTCAGATTTGTTTGCTACAAAA
CCAAAAATTacatagattttttatttcttcaaattGCTTCTGGTGAGCAT
TTTCGCGTCAAAATAATGTTGTTATATATAAATCACAGACCAGATTTACA
ACTCGTCAAACCACAAATGATTACGTTATTATCATCAGCTCATTTATTAC
AACTCggtatctattttgctgaccagaacgGCTCTCTTTCGAGGGGGAAT
TTGCGTATCTAAAAGATTTGTAGAAGTGTGCAGTGTCGTCACAAAAAAAC
TCGGAAGTACGCAGTGTCTCGTGAGCCTCctgggccatgaccctagacag
ttctagctcacaaattttataagaactggaagtgcgtggtgagccttagg
AGCCATCGAGGCTTCAAACTGAGTTCCACCACTTTACCAACTACAGAAGA
AAAACATGCCGTGACTTTTCTtaattcaatttttacaattaaaCCTTACC
TTTATGTTTTaacgagaaatttcaaattacttCCCATTTATTAGCAAAAA
GAAGATCGAGAAGCAAGCGAATCATTTGACCCAACGAAGCTACGCGACCC
TGAAAACGTTTTTAAGTCGCAGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061843-exon-scaffold_361-1491911889:26325..26926 | TCONS_00061843-exon-scaffold_361-1491911889:26325..26926 | Clytia hemisphaerica | exon |
| TCONS_00061843-exon-scaffold_361-1510915933:26325..26926 | TCONS_00061843-exon-scaffold_361-1510915933:26325..26926 | Clytia hemisphaerica | exon |
| TCONS_00061843-exon-scaffold_361-1575043694:26325..26926 | TCONS_00061843-exon-scaffold_361-1575043694:26325..26926 | Clytia hemisphaerica | exon |
| TCONS_00061843-exon-scaffold_361-1491911889:27053..27180 | TCONS_00061843-exon-scaffold_361-1491911889:27053..27180 | Clytia hemisphaerica | exon |
| TCONS_00061843-exon-scaffold_361-1510915933:27053..27180 | TCONS_00061843-exon-scaffold_361-1510915933:27053..27180 | Clytia hemisphaerica | exon |
| TCONS_00061843-exon-scaffold_361-1575043694:27053..27180 | TCONS_00061843-exon-scaffold_361-1575043694:27053..27180 | Clytia hemisphaerica | exon |
| TCONS_00061843-exon-scaffold_361-1491911889:28319..28398 | TCONS_00061843-exon-scaffold_361-1491911889:28319..28398 | Clytia hemisphaerica | exon |
| TCONS_00061843-exon-scaffold_361-1510915933:28319..28398 | TCONS_00061843-exon-scaffold_361-1510915933:28319..28398 | Clytia hemisphaerica | exon |
| TCONS_00061843-exon-scaffold_361-1575043694:28319..28398 | TCONS_00061843-exon-scaffold_361-1575043694:28319..28398 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:26325..28398 + |
Blast
The following BLAST results are available for this feature:
|
