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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061882 ID=TCONS_00061882|Name=TCONS_00061882|organism=Clytia hemisphaerica|type=transcript|length=2344bp
TAAATAACACGTTGGGGTAAAATCAGTGAATTGAGgctcaaatttTTGTA
GAGAAATGGGTGGCTGGCTTAGTTTCCAAAAAGACCATGAATCTACCGAA
GATGTCAAAAAATATTGCCAATCTATCATTTTTGTACGATTTTATGGACA
GACGAACAGTATGAAATCACACGAAATGGACCGCGATGATGTCGATGCTG
GAGGAAGGGAGAAATCTAGCCTTGGTATTATTCTGAATGAGCTAGACCGT
GAGATCAAAATGGCTCCAACAGTTGCCGAATTCGAAATGACGGAACCAAT
GAAAGCATTATTGAAGAAGTTGGCAGTCATTAGAGTTTGTACAAAAGAAT
GCGAGAATGAAGAAGATTGCCTTAAAAGGCTTTTGGAagattcaaaacat
tttgagaaGATTTATCGCGAGAGGGGTCGTAAGTATTCTTTTCAAACAAG
ATTATACAATAGtgtctccataacttgaacatgCGCAGGGAACAATAATT
TATGCGttcgaaattttgaattatCGAGTAAGGTTAAtaaagcattgtta
actgaagggacaagaaaacttgtttgagttaagggaTAGTAATTAAAAAA
CGACAGTTTTCTTCctgttttattcaaaatactCTAATAAAATACCTTAA
CTTTGTATCGGGGGATAAAGTCGTCTTTGACGACGGTTGAGATGGCTATC
GAAGTATATTATGAGAAGTGTTGTCTTAAATGAAGCTGAtgaatgaaaaa
gtgaaaagtccTCTTTGACGACGTCTTAGACAATGAGAGAATAATAGACC
TTCATAGCAGTTTTGGAGTACTTTCTGTAAATTCTAGCGGTTAGAGGAAA
AGGAGACAATTGAATCGGAAAAGAAGTTTTTTATCTTTATAGACAAATCA
GAGAATTTACATGATGACCATGATTTCTATTGGGGAACGCGACAGCAAAT
GTTGTTTGGCAAAGTGATCGTTGATTGGTTACCTGAACACATCGAGACAA
AAACTCCACCTATGGATCCTATTTTTGGAGTTCTGTTGAACCCTACTGGA
GGGCTTGTTGGACCAGGTGATTTAAAATGGATGCACGATTCTTTATTCGA
CGATTTGGGACCTTTTGCATATCATTCAGCTGTTCATGATGCTTTCGGat
atttgaaaacaaaccatAATTCTGGTCCTGGATATTGTTATTTGAACAAA
GGGATTTTTGGTGATTGGAGTCCATTTGGTGGACAATTATTTGGCTTGAG
GTATTGGAATGGGCTTTTGGGTGAAGCCAAACCAGAAGAAGCAAAGGCAG
ATCAGTTTGTGTCCAAATAAAAAGCGATAACACAATCGAAACTCTTATAG
GTAAACAAAGTTTCTAAAGCTATACCCTATTTCTGTGCAGAATGGTGCAT
CCGTGAATATTATTTCTTGTTCATCCTGTAACATTTAAGTTACTAAGTTA
TAAGTATTTCAGCTTTTATTTCTTTCTAAGAATTTTAGAATTTGTAGTAT
AGtatatttttatacattttatCTTTCAAAAATCTTAAGGATTTTTTTCA
TCATCGGTTGAGAAATTTAGGTATTTAGAGTACCGTACCAAAGCGACTTT
TCCATTtaatcatggatattcttaatttttacaaaatctttCTATACAGG
TTAAATGCTTTTTCACTCTTTGTTAGGTTCAGGTTTTAGTTCAGctccga
gggggggggggactagggcaATGGGTTACGGGGTTGctcgctggtcaggg
taccttttttaacctccacgagtcccaggtaggggtcacaaaaacaccaa
aatagaaaaattagtccctcgtagggtgcctattttgaaaatttggggaa
aaagtagaaaatttgagaacattttggaatttcagtcccattcagggtca
cttttttcgcaaatttcgagtcccacgggggtcccacgtagggtccattt
ttcgaacctcagcggagcacccccgtcggtcgacaagggtagtatcCCCC
CCGGGAGttcagccaaattttacaatGATGATGCATATTTTGTTTAAATG
TTTTGCcaatttgtaccccctatgttgaggagaggggtctggttttttga
atgataaaatccaGGGTTTTGATCAGTAAAATCGGGTtcaaaatccaggg
tggtccaaagaaatgggagaaaaaaatccaaggcgGTCCTGAaaactgga
aaaaaaatcaaaggggttctttttttaaaaaagatcaCCTCAACATAAGg
gttacaaattttttctgaaatgaatattcttataTTCTCATTATCATACT
ACTCGTATTGCATCAAATGTATTATGAAAGAAAACTTCCCTAAC Run BLAST on NCBI transcript from alignment at scaffold_361:461393..466225+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061882 ID=TCONS_00061882|Name=TCONS_00061882|organism=Clytia hemisphaerica|type=transcript|length=4833bp|location=Sequence derived from alignment at scaffold_361:461393..466225+ (Clytia hemisphaerica)
TAAATAACACGTTGGGGTAAAATCAGTGAATTGAGGTAGGTTATCATTGA
GTTCGATCAGTCAGTTATGCTAGCTATGAATGACTTTAAAATCAATCTTT
TGAATTCTAATAGAAAATATCGAACCAAAATGATAGGCTGATAAGTCGta
cagaaaaaatataaaactttgtAACTTTTTCTCTCAGAAAGGGGAGTGCC
TTGTTCAAACTTTCAGTATGAtcataatttcttttgaattcaCGGATAAA
ATTATCGAAAAAGTCTTTAAAGTTTTGCAACAGAAAGGTTTTAGTCAAAT
TCTCTTCGGAGAATATTTCATGGtttaagaaatctcaaaatctgCTTGCT
TATAGTGCACTGATCTGACCACGTGCCAAATTCTGCATAGTTTTAAGACT
TTTATGAATaatgataatatttttcaatttcaggctcaaatttTTGTAGA
GAAATGGGTGGCTGGCTTAGTTTCCAAAAAGACCATGAATCTACCGAAGA
TGTCAAAAAATATTGCCAATCTATCATTTTTGTACGATTTTATGGACAGA
CGAACAGTATGGTAAGAccacacgcttttttataagaaccatgcttttcc
atttcatcatggatattcttaactttttggggaaaattatcctaaattgt
cttacggtattcttataTTCAAATTCAACTTCAATTTAACATGAAATACA
TAGctgaagcataaaatggcacttttgtgaAAGCCTTGAGCTTTATAGAT
GGGTAATTGGCGATAAACGGTTAAAAATGcactaaaaatggcattcttag
gttacgTTGCCAAATCCataatggtgatattcttactatattcttaaatt
tttcgcCAATTTCACTATAAATAatcttattcttataaaaagagtgcGTG
TATTTAATGAAATAACCATTAGATTGGAGGGTTTTAATAAAAATGTCAAT
GAATTTTTGAAGTAGAGAGAGAAACTTTTGgtcaatttaaaattttaagc
cACTCTTTCTCGatcaataatttttgaattaGCTATTTTTCTGAACTAAT
tttgttaagaaaaaaatttccttcgcAAAGCAAAATCCTTTAATTGTGTA
GCCTAAAttcttaaatattcttaaatacCTTTTGATAAAGTATTCGCTTA
AAATGTTTATTCACTTCCTCTAAaaactaccttaagtggataaatttatA
ATTCGGCGACTGGCCAAAAACGATTTTTGGCAGGGATTTAGCGACAGATC
AATTTCGtcaaatttggcggggatttaatttggcgaattggaaattttgt
cacactgaaatgggtgaaaattactcaaaaatatactaaaaagtgttgat
ttttcacataattctctttttgttaaatttggcgaggatttaatttggcg
aattgctgaatttggaaattttggcgaattctagcaaaattcgccaaatc
cgccaaatttaatccccgccaaaatttatccacttaaggtacttGACACG
ACATGAGGTAATATACCTTAAGAACTTTTCTCGAGGTGGAGAAAACTTTT
ACTTATTGGTAATTTGGAATTTTAGACGCTACCAAGGACCGTGTTTATCA
GAATATTTTCGTTTATAGAAATCACACGAAATGGACCGCGATGATGTCGA
TGCTGGAGGAAGGGAGAAATCTAGCCTTGGTATTATTCTGAATGAGCTAG
ACCGTGAGATCAAAATGGCTCCAACAGTTGCCGAATTCGAAATGACGGAA
CCAATGAAAGCATTATTGAAGAAGTTGGCAGTCATTAGAGTTTGTACAAA
AGAATGCGAGAATGAAGAAGATTGCCTTAAAAGGCTTTTGGAagattcaa
aacattttgagaaGATTTATCGCGAGAGGGGTCGTAAGTATTCTTTTCAA
ACAAGATTATACAATAGtgtctccataacttgaacatgCGCAGGGAACAA
TAATTTATGCGttcgaaattttgaattatCGAGTAAGGTTAAtaaagcat
tgttaactgaagggacaagaaaacttgtttgagttaagggaTAGTAATTA
AAAAACGACAGTTTTCTTCctgttttattcaaaatactCTAATAAAATAC
CTTAACTTTGTATCGGGGGATAAAGTCGTCTTTGACGACGGTTGAGATGG
CTATCGAAGTATATTATGAGAAGTGTTGTCTTAAATGAAGCTGAtgaatg
aaaaagtgaaaagtccTCTTTGACGACGTCTTAGACAATGAGAGAATAAT
AGACCTTCATAGCAGTTTTGGAGTACTTTCTGTAAATTCTAGCGGTTAGA
GGAAAAGGAGACAATTGAATCGGAAAAGAAGTTTTTTATCTTTATAGACA
AATCAGAGAATTTACATGATGACCATGATTTCTATTGGGGAACGCGACAG
CAAATGTTGTTTGGCAAAGTGATCGTTGATTGGTTACCTGAACACATCGA
GACAAAAACTCCACCTATGGATCCTATTTTTGGAGTTCTGTTGAACCCTA
CTGGAGGTTTgtatattgggctcttccaaaaaGTTTTCGTACATGAGGAG
TGGATGATAGAGTTTcctaaaatctacaaaatttgccttgtccgaggggg
ggggggaactTTAATCattttgagggtaattttgactGTCAAGGGGGTCA
AGaaatgcttgtccggggggtaaatttccaaaataattttatatcctcca
ccccccccatatatttaaatattttctggaaaagcccattctcatttttg
tcatattttttttgattccATCTTCCCAAACTCGAACTAAAAAAGTCTCT
TAGCTATGGTATTTTtcatgattctgatagcgctcacgatTGTTCATGTT
CATCAGgtatataagaatatttataagaataattttagaaaaacagcgaG
GCTCgaaaaaaaccccaaaaattttaagaacattgttgAGCCAAGAATAA
CTACAATcgtggtcgtaatatttgagaaaaaagggaaatccaccagGAAG
TTTTGAATAATAACtgcaatcgatttgtaagtgctctaaagtaagttgga
agggtagagttttaactctgagttttaacatgagacttaagactgttcaa
aaatggtccattaagactcataatatagcctggaggtctataaacccgag
ccaaattgaaacATCCGATTAAATCTGACAGATGGCCCAAAATCGGCTTT
CTcacccgaactccaaatttcgaaaaacgagaaaataagcttaattctca
atagatttcgaccatgattgtaaatGCTTAGTAAATTATCACATTAGAAT
AGACAATCAATCCTATCTATTAAAAACCAGAACAGGCCAATTGACGCTCA
AACCacgaaaacaataaaaaataaccgagcctgaaaaaaattaccttatc
ggccctttttacgccggcccttattgcgtcacgagcccaaaaataccGCC
AATaaaggccggtgtaaaaagtgccgataaggtatactgattcttataaa
gaagttTAAAATTTAGTTCTCATTCTTGGTATTTATTAAGGGCTTGTTGG
ACCAGGTGATTTAAAATGGATGCACGATTCTTTATTCGACGATTTGGGAC
CTTTTGCATATCATTCAGCTGTTCATGATGCTTTCGGatatttgaaaaca
aaccatAATTCTGGTCCTGGATATTGTTATTTGAACAAAGGGATTTTTGG
TGATTGGAGTCCATTTGGTGGACAATTATTTGGCTTGAGGTATTGGAATG
GGCTTTTGGGTGAAGCCAAACCAGAAGAAGCAAAGGCAGATCAGTTTGTG
TCCAAATAAAAAGCGATAACACAATCGAAACTCTTATAGGTAAACAAAGT
TTCTAAAGCTATACCCTATTTCTGTGCAGAATGGTGCATCCGTGAATATT
ATTTCTTGTTCATCCTGTAACATTTAAGTTACTAAGTTATAAGTATTTCA
GCTTTTATTTCTTTCTAAGAATTTTAGAATTTGTAGTATAGtatattttt
atacattttatCTTTCAAAAATCTTAAGGATTTTTTTCATCATCGGTTGA
GAAATTTAGGTATTTAGAGTACCGTACCAAAGCGACTTTTCCATTtaatc
atggatattcttaatttttacaaaatctttCTATACAGGTTAAATGCTTT
TTCACTCTTTGTTAGGTTCAGGTTTTAGTTCAGctccgaggggggggggg
actagggcaATGGGTTACGGGGTTGctcgctggtcagggtacctttttta
acctccacgagtcccaggtaggggtcacaaaaacaccaaaatagaaaaat
tagtccctcgtagggtgcctattttgaaaatttggggaaaaagtagaaaa
tttgagaacattttggaatttcagtcccattcagggtcacttttttcgca
aatttcgagtcccacgggggtcccacgtagggtccatttttcgaacctca
gcggagcacccccgtcggtcgacaagggtagtatcCCCCCCGGGAGttca
gccaaattttacaatGATGATGCATATTTTGTTTAAATGTTTTGCcaatt
tgtaccccctatgttgaggagaggggtctggttttttgaatgataaaatc
caGGGTTTTGATCAGTAAAATCGGGTtcaaaatccagggtggtccaaaga
aatgggagaaaaaaatccaaggcgGTCCTGAaaactggaaaaaaaatcaa
aggggttctttttttaaaaaagatcaCCTCAACATAAGggttacaaattt
tttctgaaatgaatattcttataTTCTCATTATCATACTACTCGTATTGC
ATCAAATGTATTATGAAAGAAAACTTCCCTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061882-exon-scaffold_361-1491911889:461393..461427 | TCONS_00061882-exon-scaffold_361-1491911889:461393..461427 | Clytia hemisphaerica | exon |
| TCONS_00061882-exon-scaffold_361-1510915933:461393..461427 | TCONS_00061882-exon-scaffold_361-1510915933:461393..461427 | Clytia hemisphaerica | exon |
| TCONS_00061882-exon-scaffold_361-1575043694:461393..461427 | TCONS_00061882-exon-scaffold_361-1575043694:461393..461427 | Clytia hemisphaerica | exon |
| TCONS_00061882-exon-scaffold_361-1491911889:461826..461953 | TCONS_00061882-exon-scaffold_361-1491911889:461826..461953 | Clytia hemisphaerica | exon |
| TCONS_00061882-exon-scaffold_361-1510915933:461826..461953 | TCONS_00061882-exon-scaffold_361-1510915933:461826..461953 | Clytia hemisphaerica | exon |
| TCONS_00061882-exon-scaffold_361-1575043694:461826..461953 | TCONS_00061882-exon-scaffold_361-1575043694:461826..461953 | Clytia hemisphaerica | exon |
| TCONS_00061882-exon-scaffold_361-1491911889:463011..463898 | TCONS_00061882-exon-scaffold_361-1491911889:463011..463898 | Clytia hemisphaerica | exon |
| TCONS_00061882-exon-scaffold_361-1510915933:463011..463898 | TCONS_00061882-exon-scaffold_361-1510915933:463011..463898 | Clytia hemisphaerica | exon |
| TCONS_00061882-exon-scaffold_361-1575043694:463011..463898 | TCONS_00061882-exon-scaffold_361-1575043694:463011..463898 | Clytia hemisphaerica | exon |
| TCONS_00061882-exon-scaffold_361-1491911889:464933..466225 | TCONS_00061882-exon-scaffold_361-1491911889:464933..466225 | Clytia hemisphaerica | exon |
| TCONS_00061882-exon-scaffold_361-1510915933:464933..466225 | TCONS_00061882-exon-scaffold_361-1510915933:464933..466225 | Clytia hemisphaerica | exon |
| TCONS_00061882-exon-scaffold_361-1575043694:464933..466225 | TCONS_00061882-exon-scaffold_361-1575043694:464933..466225 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:461393..466225 + |
Blast
The following BLAST results are available for this feature:
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