|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061904 ID=TCONS_00061904|Name=TCONS_00061904|organism=Clytia hemisphaerica|type=transcript|length=1692bp
ATTTAATAAGACGAAAAGGCAGAGAGACccatttttattttctgtttgTC
TTTCACAAGTCAATAGTAAAAGGACAAGAAAacgaaaagtaaagaaaaaa
ccATATTTCATTACCCCTGAAAGAAAAGGGGCAAAAAGGAGCTCGATGAG
AATGGCGAATAAATACGGAAGAAATGcgaaactaattttatttttacttg
cCGAATCAACGAAAAGACAATCACACATTAGCCGCTTGTTAGACATAATG
CATGGCTTGACCACAATCTATAACGTTCGTttggtaaatgaaaaaaattt
gtatgCTACTTACATACAAGAATCTTGTGAAAAATTAGTCATTGTTTTGT
TCAATGAGGATGGTCTGGGAAATAGACAGTTTCGTGAATGTTTACGAACA
TCCCTAGCAGCAAAATTGGACATTATTGGTGTTCTTGACGAAGGTGTATC
ACGAGAAAGAGTCCTCAGCTTTTTCTCTTTCAACAATAAGCGAAAACAAA
TGCTGGAAGAAATTGTCACAAGTGCATTCTGTTTCCAGAAAGACTGTCTG
TTCAAAGCAACACCATTAGTTGATCGCATACAGCAATTATGCAGACCGGT
ATCTTCCCGGATAAGCGATCGCCCGCGTTTACCAAAGATAACCGAACCCA
ACGTCAATCTGGAAGCTTGtttaaaatcaaagaaagtGATTTTGAAACCC
ATGTCTCGAGCACCTCCACGAACTTTATTTTCATGCACCTTCACCAGAAA
AACTGAACTCCCACTCCTGAAGCCTCAAAAATCATCCGCAGGGCAAATCA
GAAGTCTTCCAAGACCGAGGAATATCCAAAACACAAATGTCATTTATCCA
AAGATTGAAATCTCACAAGGATTCCCCACTCAAGTTATAAAGAAACGTAC
AAGCTCAACATCATCAGCTCGTAGTAAAATACCAATCAAGCAATTGACAT
GTCCGATAATTGAAATCAGCCAAGATGACGATTCGGACGATATTCCGGAC
ACTCCAGATGCGATCACTGAAAAGCAAGACCGGTTGCCATGGACAATTAC
CACGACAACAACGCTAGATGATCCAGGAGCAAACAGAGATGAGTTTAATC
TTGAAATTGAAGGCGATTGTGAGCGAAGACTTTCGTTTGACTACGTCTCG
AAAACGTATATCGTGTTTGAtccaaagaagaagaaaacccTACACGTCAA
TTTCCCTAATGGTTGCAGCATTTTGAGGCGTGAAAGTTTACATGATATCC
TGTCCAACGTTTCGTCACGCAGAAATTCATTCTTGTGGAGCAACAGTGCA
AGTTCTTCAACAGATGAAATCAATCTTGAATCTAAGTTCGATTCGGTCAA
TATCTTGGACTCACCAATTCCCTCGCCAACAATGAGAAGAAGCAATGTGA
TTTATCAAAATCCACTTCCTGTTTACCCAGATGAAATTTGTTTTCCACCG
GTGGAAAAATTCCCATGTGACACTTTACAGATGAGAAGGCCGTCAGTGTT
TGACGTCTTATTGCattaaattaaaaacattttttggtcaattttgaaaa
ttttcttaaatttcatgaattttctttatagtaagtagtaagtaacCATT
TCTAGAAaagttttatcaatttttttgtctgaaaaccaaaactttttgat
tgtatttaagaatttttttttaccaataaTAAATTGTTGAAG Run BLAST on NCBI protein sequence of TCONS_00061904-protein >TCONS_00061904-protein ID=TCONS_00061904-protein|Name=TCONS_00061904-protein|organism=Clytia hemisphaerica|type=polypeptide|length=505bp
FNKTKRQRDPFLFSVCLSQVNSKRTRKRKVKKKPYFITPERKGAKRSSMR
MANKYGRNAKLILFLLAESTKRQSHISRLLDIMHGLTTIYNVRLVNEKNL
YATYIQESCEKLVIVLFNEDGLGNRQFRECLRTSLAAKLDIIGVLDEGVS
RERVLSFFSFNNKRKQMLEEIVTSAFCFQKDCLFKATPLVDRIQQLCRPV
SSRISDRPRLPKITEPNVNLEACLKSKKVILKPMSRAPPRTLFSCTFTRK
TELPLLKPQKSSAGQIRSLPRPRNIQNTNVIYPKIEISQGFPTQVIKKRT
SSTSSARSKIPIKQLTCPIIEISQDDDSDDIPDTPDAITEKQDRLPWTIT
TTTTLDDPGANRDEFNLEIEGDCERRLSFDYVSKTYIVFDPKKKKTLHVN
FPNGCSILRRESLHDILSNVSSRRNSFLWSNSASSSTDEINLESKFDSVN
ILDSPIPSPTMRRSNVIYQNPLPVYPDEICFPPVEKFPCDTLQMRRPSVF
DVLLH Run BLAST on NCBI transcript from alignment at scaffold_361:781157..784196+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061904 ID=TCONS_00061904|Name=TCONS_00061904|organism=Clytia hemisphaerica|type=transcript|length=3040bp|location=Sequence derived from alignment at scaffold_361:781157..784196+ (Clytia hemisphaerica)
ATTTAATAAGACGAAAAGGCAGAGAGACccatttttattttctgtttgTC
TTTCACAAGTCAATAGTAAAAGGACAAGAAAacgaaaagtaaagaaaaaa
ccATATTTCATTACCCCTGAAAGAAAAGGGGCAAAAAGGTAAGAATTTGT
TTAACTTTACATATTCTGCTTTTATTATTTGTAAGGAAGGCATTCTTATT
TGCTATCTTGGTATTCTCTAGCACACCCCTCTCTCATAGCCCATCTGGAA
TTCTTTTCCTCAGTTGGGATAAACATTCCTATTGAATTcccgatggggat
agaaattctatagtTCGATAGTTCCAAGGCTAGAACATCCAGTGAGGATG
gtttacaatttttaaacattgaattttgaatggggatgaaatcaaagtca
ttttcccagcagggctgaaattctagggtatttttcNAAAGGCAAAGTAT
TTTCGGTTCAGTGCTTGGATTTGctgaatttttatttataaatctGTGCA
TTTAGTATCCTTTGTTATTGTCTAAATATCTCCATGGAAACATTCATAGG
CAGTAGAGGCGCTAGTTAAAATTTAATGACCCAAAAAGAAGagaatatat
ttcatttttatctgatgaagatgaagaacaaaataatgagaaaataaaac
aaggagaaattgaaaaataatttttttgtttttctttctcgaATAGAACA
AGGGAATAATAGAGGTGAAAAGAGCTTTTCACTTTTCTATTATGATTTAT
TTTCTCGAAATGATTTTAAAGTTGATATATATTTAATAAGACGAAAAGGC
AGAGAGACccatttttattttctgtttgTCTTTCACAAGTCAATAGTAAA
AGGACAAGAAAacgaaaagtaaagaaaaaaccATATTTCATTACCCCTGA
AAGAAAAGGGGCAAAAAGGTAAGAATTTGTTTAACTTTACATATTCTGCT
TTTATTATTTGTAAGGAAGGCATTCTTATTTGCTATCTTGGTATTCTCTA
GCACACCCCTCTCTCATAGCCCATCTGGAATTCTTTTCCTCAGTTGGGAT
AAACATTCCTATTGAATTcccgatggggatagaaattctatagtTCGATA
GTTCCAAGGCTAGAACATCCAGTGAGGATGgtttacaatttttaaacatt
gaattttgaatggggatgaaatcaaagtcattttcccagcagggctgaaa
ttctagggtatttttccaccggggacgaattttttgccaaattttccagt
gggtctgtgacacaggggtgttctaGCGAGAAAACAAACCATGTTTCTTT
CTGTCAGCGATGTAAGTAGTGAAGCTGTCGGCAATGTCACTTATTTGAAG
AAAGAGCAGAGAAGGAGCAGAAAAAACATTAAGACGGTTCGTAAACACTG
CAGACCAAAAATAGGGCCGTTTTTAGTCCGAGTCTTGTACAAAAGATTTC
tcctaaaattttaaacattttcttttcgATTAATAGGAGCTCGATGAGAA
TGGCGAATAAATACGGAAGAAATGcgaaactaattttatttttacttgcC
GAATCAACGAAAAGACAATCACACATTAGCCGCTTGTTAGACATAATGCA
TGGCTTGACCACAATCTATAACGTTCGTttggtaaatgaaaaaaatttgt
atgCTACTTACATACAAGAATCTTGTGAAAAATTAGTCATTGTTTTGTTC
AATGAGGATGGTCTGGGAAATAGACAGTTTCGTGAATGTTTACGAACATC
CCTAGCAGCAAAATTGGACATTATTGGTGTTCTTGACGAAGGTGTATCAC
GAGAAAGAGTCCTCAGCTTTTTCTCTTTCAACAATAAGCGAAAACAAATG
CTGGAAGAAATTGTCACAAGTGCATTCTGTTTCCAGAAAGACTGTCTGTT
CAAAGCAACACCATTAGTTGATCGCATACAGCAATTATGCAGACCGGTAT
CTTCCCGGATAAGCGATCGCCCGCGTTTACCAAAGATAACCGAACCCAAC
GTCAATCTGGAAGCTTGtttaaaatcaaagaaagtGATTTTGAAACCCAT
GTCTCGAGCACCTCCACGAACTTTATTTTCATGCACCTTCACCAGAAAAA
CTGAACTCCCACTCCTGAAGCCTCAAAAATCATCCGCAGGGCAAATCAGA
AGTCTTCCAAGACCGAGGAATATCCAAAACACAAATGTCATTTATCCAAA
GATTGAAATCTCACAAGGATTCCCCACTCAAGTTATAAAGAAACGTACAA
GCTCAACATCATCAGCTCGTAGTAAAATACCAATCAAGCAATTGACATGT
CCGATAATTGAAATCAGCCAAGATGACGATTCGGACGATATTCCGGACAC
TCCAGATGCGATCACTGAAAAGCAAGACCGGTTGCCATGGACAATTACCA
CGACAACAACGCTAGATGATCCAGGAGCAAACAGAGATGAGTTTAATCTT
GAAATTGAAGGCGATTGTGAGCGAAGACTTTCGTTTGACTACGTCTCGAA
AACGTATATCGTGTTTGAtccaaagaagaagaaaacccTACACGTCAATT
TCCCTAATGGTTGCAGCATTTTGAGGCGTGAAAGTTTACATGATATCCTG
TCCAACGTTTCGTCACGCAGAAATTCATTCTTGTGGAGCAACAGTGCAAG
TTCTTCAACAGATGAAATCAATCTTGAATCTAAGTTCGATTCGGTCAATA
TCTTGGACTCACCAATTCCCTCGCCAACAATGAGAAGAAGCAATGTGATT
TATCAAAATCCACTTCCTGTTTACCCAGATGAAATTTGTTTTCCACCGGT
GGAAAAATTCCCATGTGACACTTTACAGATGAGAAGGCCGTCAGTGTTTG
ACGTCTTATTGCattaaattaaaaacattttttggtcaattttgaaaatt
ttcttaaatttcatgaattttctttatagtaagtagtaagtaacCATTTC
TAGAAaagttttatcaatttttttgtctgaaaaccaaaactttttgattg
tatttaagaatttttttttaccaataaTAAATTGTTGAAG Coding sequence (CDS) from alignment at scaffold_361:781157..784196+ >TCONS_00061904 ID=TCONS_00061904|Name=TCONS_00061904|organism=Clytia hemisphaerica|type=CDS|length=3036bp|location=Sequence derived from alignment at scaffold_361:781157..784196+ (Clytia hemisphaerica)
TTTAATAAGACGAAAAGGCAGAGAGACccatttttattttctgtttgTCT
TTCACAAGTCAATAGTAAAAGGACAAGAAAacgaaaagtaaagaaaaaac
cATATTTCATTACCCCTGAAAGAAAAGGGGCAAAAAGGAGCTCGATGAGA
ATGGCGAATAAATACGGAAGAAATGcgaaactaattttatttttacttgc
CGAATCAACGAAAAGACAATCACACATTAGCCGCTTGTTAGACATAATGC
ATGGCTTGACCACAATCTATAACGTTCGTttggtaaatgaaaaaaatttg
tatgCTACTTACATACAAGAATCTTGTGAAAAATTAGTCATTGTTTTGTT
CAATGAGGATGGTCTGGGAAATAGACAGTTTCGTGAATGTTTACGAACAT
CCCTAGCAGCAAAATTGGACATTATTGGTGTTCTTGACGAAGGTGTATCA
CGAGAAAGAGTCCTCAGCTTTTTCTCTTTCAACAATAAGCGAAAACAAAT
GCTGGAAGAAATTGTCACAAGTGCATTCTGTTTCCAGAAAGACTGTCTGT
TCAAAGCAACACCATTAGTTGATCGCATACAGCAATTATGCAGACCGGTA
TCTTCCCGGATAAGCGATCGCCCGCGTTTACCAAAGATAACCGAACCCAA
CGTCAATCTGGAAGCTTGtttaaaatcaaagaaagtGATTTTGAAACCCA
TGTCTCGAGCACCTCCACGAACTTTATTTTCATGCACCTTCACCAGAAAA
ACTGAACTCCCACTCCTGAAGCCTCAAAAATCATCCGCAGGGCAAATCAG
AAGTCTTCCAAGACCGAGGAATATCCAAAACACAAATGTCATTTATCCAA
AGATTGAAATCTCACAAGGATTCCCCACTCAAGTTATAAAGAAACGTACA
AGCTCAACATCATCAGCTCGTAGTAAAATACCAATCAAGCAATTGACATG
TCCGATAATTGAAATCAGCCAAGATGACGATTCGGACGATATTCCGGACA
CTCCAGATGCGATCACTGAAAAGCAAGACCGGTTGCCATGGACAATTACC
ACGACAACAACGCTAGATGATCCAGGAGCAAACAGAGATGAGTTTAATCT
TGAAATTGAAGGCGATTGTGAGCGAAGACTTTCGTTTGACTACGTCTCGA
AAACGTATATCGTGTTTGAtccaaagaagaagaaaacccTACACGTCAAT
TTCCCTAATGGTTGCAGCATTTTGAGGCGTGAAAGTTTACATGATATCCT
GTCCAACGTTTCGTCACGCAGAAATTCATTCTTGTGGAGCAACAGTGCAA
GTTCTTCAACAGATGAAATCAATCTTGAATCTAAGTTCGATTCGGTCAAT
ATCTTGGACTCACCAATTCCCTCGCCAACAATGAGAAGAAGCAATGTGAT
TTATCAAAATCCACTTCCTGTTTACCCAGATGAAATTTGTTTTCCACCGG
TGGAAAAATTCCCATGTGACACTTTACAGATGAGAAGGCCGTCAGTGTTT
GACGTCTTATTGCattaaTTTAATAAGACGAAAAGGCAGAGAGACccatt
tttattttctgtttgTCTTTCACAAGTCAATAGTAAAAGGACAAGAAAac
gaaaagtaaagaaaaaaccATATTTCATTACCCCTGAAAGAAAAGGGGCA
AAAAGGAGCTCGATGAGAATGGCGAATAAATACGGAAGAAATGcgaaact
aattttatttttacttgcCGAATCAACGAAAAGACAATCACACATTAGCC
GCTTGTTAGACATAATGCATGGCTTGACCACAATCTATAACGTTCGTttg
gtaaatgaaaaaaatttgtatgCTACTTACATACAAGAATCTTGTGAAAA
ATTAGTCATTGTTTTGTTCAATGAGGATGGTCTGGGAAATAGACAGTTTC
GTGAATGTTTACGAACATCCCTAGCAGCAAAATTGGACATTATTGGTGTT
CTTGACGAAGGTGTATCACGAGAAAGAGTCCTCAGCTTTTTCTCTTTCAA
CAATAAGCGAAAACAAATGCTGGAAGAAATTGTCACAAGTGCATTCTGTT
TCCAGAAAGACTGTCTGTTCAAAGCAACACCATTAGTTGATCGCATACAG
CAATTATGCAGACCGGTATCTTCCCGGATAAGCGATCGCCCGCGTTTACC
AAAGATAACCGAACCCAACGTCAATCTGGAAGCTTGtttaaaatcaaaga
aagtGATTTTGAAACCCATGTCTCGAGCACCTCCACGAACTTTATTTTCA
TGCACCTTCACCAGAAAAACTGAACTCCCACTCCTGAAGCCTCAAAAATC
ATCCGCAGGGCAAATCAGAAGTCTTCCAAGACCGAGGAATATCCAAAACA
CAAATGTCATTTATCCAAAGATTGAAATCTCACAAGGATTCCCCACTCAA
GTTATAAAGAAACGTACAAGCTCAACATCATCAGCTCGTAGTAAAATACC
AATCAAGCAATTGACATGTCCGATAATTGAAATCAGCCAAGATGACGATT
CGGACGATATTCCGGACACTCCAGATGCGATCACTGAAAAGCAAGACCGG
TTGCCATGGACAATTACCACGACAACAACGCTAGATGATCCAGGAGCAAA
CAGAGATGAGTTTAATCTTGAAATTGAAGGCGATTGTGAGCGAAGACTTT
CGTTTGACTACGTCTCGAAAACGTATATCGTGTTTGAtccaaagaagaag
aaaacccTACACGTCAATTTCCCTAATGGTTGCAGCATTTTGAGGCGTGA
AAGTTTACATGATATCCTGTCCAACGTTTCGTCACGCAGAAATTCATTCT
TGTGGAGCAACAGTGCAAGTTCTTCAACAGATGAAATCAATCTTGAATCT
AAGTTCGATTCGGTCAATATCTTGGACTCACCAATTCCCTCGCCAACAAT
GAGAAGAAGCAATGTGATTTATCAAAATCCACTTCCTGTTTACCCAGATG
AAATTTGTTTTCCACCGGTGGAAAAATTCCCATGTGACACTTTACAGATG
AGAAGGCCGTCAGTGTTTGACGTCTTATTGCattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061904-exon-scaffold_361-1491911889:781157..781294 | TCONS_00061904-exon-scaffold_361-1491911889:781157..781294 | Clytia hemisphaerica | exon |
| TCONS_00061904-exon-scaffold_361-1510915933:781157..781294 | TCONS_00061904-exon-scaffold_361-1510915933:781157..781294 | Clytia hemisphaerica | exon |
| TCONS_00061904-exon-scaffold_361-1575043694:781157..781294 | TCONS_00061904-exon-scaffold_361-1575043694:781157..781294 | Clytia hemisphaerica | exon |
| TCONS_00061904-exon-scaffold_361-1491911889:782643..784196 | TCONS_00061904-exon-scaffold_361-1491911889:782643..784196 | Clytia hemisphaerica | exon |
| TCONS_00061904-exon-scaffold_361-1510915933:782643..784196 | TCONS_00061904-exon-scaffold_361-1510915933:782643..784196 | Clytia hemisphaerica | exon |
| TCONS_00061904-exon-scaffold_361-1575043694:782643..784196 | TCONS_00061904-exon-scaffold_361-1575043694:782643..784196 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:781157..784196 + |
Blast
The following BLAST results are available for this feature:
|
