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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061908 ID=TCONS_00061908|Name=TCONS_00061908|organism=Clytia hemisphaerica|type=transcript|length=2208bp
attcccctaccccttagctttccaaaaatgtataacaagtgcttctaaca
aaacagtcaagcgattccaaaaaatcgaacaaaattccccctactatacc
GTCAATCGTCATCAAAATATTACATTCTCATTACAACATACAATATCGAA
TAATTTCGCTATAGAGCGTTCAGTTATtatacattttcaaattttcaagt
cTTATCTTTTCTCGATAGAAATCCATATAGATCCTTTGGGGTCTTGAGAC
AGTGAGAGAGGATCTGGGATTACTTCTTCAATGGTCTTAGAGCATGGCAC
AATACGATATTTGCTCAAGATTCTGCTGATGATTATCTTCACTTTCATGG
TGGCAAAACGTTGAGCAATGCAATTTCGTGGACCGTGACCAAAGCCACCA
TAAGCAAATGGGTGTCTTTCTGCTTTCTTTTCACCACTGAAATTATCTGG
ATTGAAAGCTTTAGGATTTGGGAAGTATTTTTCATCCTTCACGACTGCTG
GTTGTGCGAAATAGACATAAACATCCTTTGGTATCACCATTTCAGTACCT
GGAACCTTGAACTCGTTGATCGAAGCGCGTTCTAGATGAGTCAAAGGATA
CATTCTCAAACTCTCTTGAAAGAATTGTTCCATGTAGGTCATATTCATAA
TAGTGGTATAATCGGCCTGATCAGAACCTGTCGATTCCATTGTTTCTTGT
ATCTCCTGGTACAGTCGTTCCTGGTAATCCTGGTTCTTTGCAAGGTTGTA
CAGCATCATGGATGCTGCAGTTGATGCTGTATCAAAACCTGCCAAGAACA
TCACCAACGAGTTTGCAATAATGATCCTCTCAACTTCATCCTTTTTCAGC
TCAGATTCTGGTTGCGTATCATTGGTAGACTCTTCTCCATCAGTGGTAGA
GATTTCCTTCTTCAGAATATCAATACAAGTGTCAATAAAATCGTTTCGCT
TCAACCCGCTCTCTTGTCGATCCTTCATTGCTTTCAAAACAATTGCTGCA
AAGAAATCTTCAGATTTTCTATCTAAAACATCCATATCAAGCCATTTGAA
CATGCTCGGCCAAAACATATATAgcataaatttcataaaaatactaGGAG
TCATTGTTTTCCCAAGCAATGTGTTGGCATTCGTTTTAAACATATTTTCA
GGCTCGTTGATGCTGTCGGATTCATAACCAAAGCCGGTAGAAACGATGAC
ATCCAAAGCAAAATTCTTCATCAACTCTTTCCCTTCGATTTCCTGACCAA
TATTCTGCTCCAAGAAGATGTCACAATGATCTGCTATCTTATGTATCAAA
GGAACCATAGCTTTAAGTTTTCCACTGGTGAAGATAGGGGTTAAGGAGGA
TCTAACGGTCTTCCATTGTTGACCACGCAGCTCTGTCAACATCATTTGAA
TGTATCGATTGTTCTTTGAATGTGGACTGATTGGATTTTTCTGAAGAGGT
TTTCTCTCTATGAAGGTATCAAAGTTCTTCACCAGTACCAACTTTGCCAG
ATCTAAATCTCGAATAACGATATACGGATCACCCCATATTCCATAACACC
CGACTAATGGAGCATCAGGGAAACTGTTATAAGCATGATCAGTTAGTTCA
GCGAAAGCAATTTTCTGTGAGAATAGATCCCACGTTCCCTTACTTCCAAA
AGGGAAGGTTCCAGGGTCAGATGGTATACCTCTTCGTTCCCAGAACGTCA
TTTTATGTCTAACGTATAAATAGAATGCAGTAAATGCAATCACAAAACTG
GCAAAGACGATTTCCCACATTCTGTCTTGACAGATTGAATCTCTTTACAA
AAAAAGTTAACGGTCTCTTTTCTCGAAACCTCTGATGTGTTCCTCTTTGC
CTGTGTTGATtctgttttgaatgttttgattttttgtacacTTGTTGTAA
ATATCTCCTCAAATTACATTTAAATGTCTTGTTGCTATATTAAAATGATC
CAATAATTATCTCAATTGACAAATTCCATTTGTTGCTGGAACACAAATTA
AAATGTTCTAGAACCTTTCCATTTTCTTTTAATCTTGCTCTGCTGTACAA
TCTCTTCTCTCTTATGAGCAAATTTTACAAAACATAGACAAAttgattta
atattttttcatcatgtttttttgcaaaaatgtcTAAAGCAGCATTTATT
ATTTATAGTTCGCCTCAGATTAGCTCACTCCTACGTTGTGATTCAAAATA
CCTTTCAC Run BLAST on NCBI transcript from alignment at scaffold_361:864512..866719+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061908 ID=TCONS_00061908|Name=TCONS_00061908|organism=Clytia hemisphaerica|type=transcript|length=2208bp|location=Sequence derived from alignment at scaffold_361:864512..866719+ (Clytia hemisphaerica)
attcccctaccccttagctttccaaaaatgtataacaagtgcttctaaca
aaacagtcaagcgattccaaaaaatcgaacaaaattccccctactatacc
GTCAATCGTCATCAAAATATTACATTCTCATTACAACATACAATATCGAA
TAATTTCGCTATAGAGCGTTCAGTTATtatacattttcaaattttcaagt
cTTATCTTTTCTCGATAGAAATCCATATAGATCCTTTGGGGTCTTGAGAC
AGTGAGAGAGGATCTGGGATTACTTCTTCAATGGTCTTAGAGCATGGCAC
AATACGATATTTGCTCAAGATTCTGCTGATGATTATCTTCACTTTCATGG
TGGCAAAACGTTGAGCAATGCAATTTCGTGGACCGTGACCAAAGCCACCA
TAAGCAAATGGGTGTCTTTCTGCTTTCTTTTCACCACTGAAATTATCTGG
ATTGAAAGCTTTAGGATTTGGGAAGTATTTTTCATCCTTCACGACTGCTG
GTTGTGCGAAATAGACATAAACATCCTTTGGTATCACCATTTCAGTACCT
GGAACCTTGAACTCGTTGATCGAAGCGCGTTCTAGATGAGTCAAAGGATA
CATTCTCAAACTCTCTTGAAAGAATTGTTCCATGTAGGTCATATTCATAA
TAGTGGTATAATCGGCCTGATCAGAACCTGTCGATTCCATTGTTTCTTGT
ATCTCCTGGTACAGTCGTTCCTGGTAATCCTGGTTCTTTGCAAGGTTGTA
CAGCATCATGGATGCTGCAGTTGATGCTGTATCAAAACCTGCCAAGAACA
TCACCAACGAGTTTGCAATAATGATCCTCTCAACTTCATCCTTTTTCAGC
TCAGATTCTGGTTGCGTATCATTGGTAGACTCTTCTCCATCAGTGGTAGA
GATTTCCTTCTTCAGAATATCAATACAAGTGTCAATAAAATCGTTTCGCT
TCAACCCGCTCTCTTGTCGATCCTTCATTGCTTTCAAAACAATTGCTGCA
AAGAAATCTTCAGATTTTCTATCTAAAACATCCATATCAAGCCATTTGAA
CATGCTCGGCCAAAACATATATAgcataaatttcataaaaatactaGGAG
TCATTGTTTTCCCAAGCAATGTGTTGGCATTCGTTTTAAACATATTTTCA
GGCTCGTTGATGCTGTCGGATTCATAACCAAAGCCGGTAGAAACGATGAC
ATCCAAAGCAAAATTCTTCATCAACTCTTTCCCTTCGATTTCCTGACCAA
TATTCTGCTCCAAGAAGATGTCACAATGATCTGCTATCTTATGTATCAAA
GGAACCATAGCTTTAAGTTTTCCACTGGTGAAGATAGGGGTTAAGGAGGA
TCTAACGGTCTTCCATTGTTGACCACGCAGCTCTGTCAACATCATTTGAA
TGTATCGATTGTTCTTTGAATGTGGACTGATTGGATTTTTCTGAAGAGGT
TTTCTCTCTATGAAGGTATCAAAGTTCTTCACCAGTACCAACTTTGCCAG
ATCTAAATCTCGAATAACGATATACGGATCACCCCATATTCCATAACACC
CGACTAATGGAGCATCAGGGAAACTGTTATAAGCATGATCAGTTAGTTCA
GCGAAAGCAATTTTCTGTGAGAATAGATCCCACGTTCCCTTACTTCCAAA
AGGGAAGGTTCCAGGGTCAGATGGTATACCTCTTCGTTCCCAGAACGTCA
TTTTATGTCTAACGTATAAATAGAATGCAGTAAATGCAATCACAAAACTG
GCAAAGACGATTTCCCACATTCTGTCTTGACAGATTGAATCTCTTTACAA
AAAAAGTTAACGGTCTCTTTTCTCGAAACCTCTGATGTGTTCCTCTTTGC
CTGTGTTGATtctgttttgaatgttttgattttttgtacacTTGTTGTAA
ATATCTCCTCAAATTACATTTAAATGTCTTGTTGCTATATTAAAATGATC
CAATAATTATCTCAATTGACAAATTCCATTTGTTGCTGGAACACAAATTA
AAATGTTCTAGAACCTTTCCATTTTCTTTTAATCTTGCTCTGCTGTACAA
TCTCTTCTCTCTTATGAGCAAATTTTACAAAACATAGACAAAttgattta
atattttttcatcatgtttttttgcaaaaatgtcTAAAGCAGCATTTATT
ATTTATAGTTCGCCTCAGATTAGCTCACTCCTACGTTGTGATTCAAAATA
CCTTTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061908-exon-scaffold_361-1491911889:864512..866719 | TCONS_00061908-exon-scaffold_361-1491911889:864512..866719 | Clytia hemisphaerica | exon |
| TCONS_00061908-exon-scaffold_361-1510915933:864512..866719 | TCONS_00061908-exon-scaffold_361-1510915933:864512..866719 | Clytia hemisphaerica | exon |
| TCONS_00061908-exon-scaffold_361-1575043694:864512..866719 | TCONS_00061908-exon-scaffold_361-1575043694:864512..866719 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:864512..866719 + |
Blast
BLAST of TCONS_00061908 vs. Swiss-Prot (Human)
Match: CP3A4 (Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1 SV=4) HSP 1 Score: 216.853 bits (551), Expect = 1.751e-61 Identity = 154/517 (29.79%), Postives = 247/517 (47.78%), Query Frame = -1
Query: 205 YVRHKMTFWERRGIPSDPGTFPFGSKGTWDLFSQKIAFAELTDHAYNSFPDAPLVGCYG-IWG-----DPYIVIRDLDLAKLVLVKN-FDTFIERKPLQKNPISPHSKNNRYIQMMLTELRGQQWKTVRSSLTPIFTSGKLKAMVPLIHKIADHC--DIFLEQNIGQEIEGKELMKNFALDVIVSTGFGYESDSINEPENMFKTNANTLLGKTMTPSIFMKFMLYMFWPSMFKWLDMDVLDRKSEDFFAAIVLKAMKDRQESGLK-RNDFIDTCIDILKKEISTTDGEESTNDTQPESELKKDEVERIIIANSLVMFLAGFDTASTAASMMLYNLAKNQDYQERLYQEIQETMESTGSDQADYTTIMNMTYMEQFFQESLRMYPLT-HLERASINEFKVPGTEMVIPKDVYVYFAQPAVVKDEKYFPNPKAFNPDNFSGEKKAERHPFAYGGFGHGPRNCIAQRFATMKVKIIISRILSKYRIVPCSKTIEEVIPDPLSLSQ--DPKGSIWISIEKR 1716
Y H +++ GIP P PF ++ S F + YG +WG P + I D D+ K VLVK + F R+P P+ +++ ++ ++WK +RS L+P FTSGKLK MVP+I + D ++ E G+ + K++ +++DVI ST FG DS+N P++ F N LL F+ ++ F + + L++ V R+ +F V + + R E K R DF+ ID S N + ES ++E ++A S++ AG++T S+ S ++Y LA + D Q++L +EI + + Y T++ M Y++ E+LR++P+ LER + ++ G M IPK V V A+ +D KY+ P+ F P+ FS + K P+ Y FG GPRNCI RFA M +K+ + R+L + PC +T IP LSL P+ + + +E R
Sbjct: 25 YGTHSHGLFKKLGIPG-PTPLPF----LGNILSYHKGFCMFDMECHKK---------YGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPF--GPVG-------FMKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFGVNIDSLNNPQDPFVENTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICVFPREVTNFLRKSVKRMKESRLEDTQKHRVDFLQLMID-------------SQNSKETESHKALSDLE--LVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAP--PTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEING--MFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKET---QIPLKLSLGGLLQPEKPVVLKVESR 496
The following BLAST results are available for this feature:
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