|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061931 ID=TCONS_00061931|Name=TCONS_00061931|organism=Clytia hemisphaerica|type=transcript|length=4515bpRun BLAST on NCBI protein sequence of TCONS_00061931-protein >TCONS_00061931-protein ID=TCONS_00061931-protein|Name=TCONS_00061931-protein|organism=Clytia hemisphaerica|type=polypeptide|length=877bp MEVFVFLLLTCVQCLLVFGDVCIPAKHRKFTKEDLKKDFNTKEISKSAAFRun BLAST on NCBI transcript from alignment at scaffold_361:1403345..1412299+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061931 ID=TCONS_00061931|Name=TCONS_00061931|organism=Clytia hemisphaerica|type=transcript|length=8955bp|location=Sequence derived from alignment at scaffold_361:1403345..1412299+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_361:1403345..1412299+ >TCONS_00061931 ID=TCONS_00061931|Name=TCONS_00061931|organism=Clytia hemisphaerica|type=CDS|length=34242bp|location=Sequence derived from alignment at scaffold_361:1403345..1412299+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061931 vs. Swiss-Prot (Human)
Match: SEM5A (Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3) HSP 1 Score: 235.343 bits (599), Expect = 4.665e-63 Identity = 190/717 (26.50%), Postives = 304/717 (42.40%), Query Frame = 2
Query: 1256 CIPAKHRKFTKEDLKKDFNTKEISKSAAFQSIVTNEKTNKLYTGGRNSITVLDGTNLNNISHISWKVDN---ERCLSEGLVPKEYCNNHVTLINLYKDKIVACGTGSTRPVYRVFSQDSLNVTRE---GNRLCASPNPEHRVIGQITSLGEMIVATYKDQKGRDSEVH---GSFMPEKLPVYRAKLKTGADDVKPSADFIKSFYIGNSVYKFFIEEAEEN--GNQQTPTVGRFCQTDNGGPSFISNRLWTTFRKARLNCFYNRADNKMVFRHLVDVDYDATKKIFYAIYTMTKHESLASAICTFKFEDLQEAFSGNFLAKNENNKEWNEIQNPKIFYGCKVNRTKLSSSINPTSPGKEPTNSLNLESSM-FVSSHRIMAKTISTQPDIFQYMKPVTRFSKIAIDQFSGENKAQETLLNII---DDQGNIFTLHANLGNTKESCIIEEIATGMENP----KLFQMNHKERMLYITTSDGSRLMTYNVDSCARYNGKSDCISAHNPRCGWSMQTSQCLSVRSSGNETLL-QDLNKCPNR-LDI---FSAWSSW-KAQEQEGGQEKYCLVRHRQCHS----CDLKLCDVASTEVINCTANAVTDIDRWLKEGAIDGSWSSWQEWSECGNHVKCGNDTKIRSRQCESPKPANGGRECIGRDFECTTCPKKKEII---NIIWTQWSKWSNCPDK-SVKYETRARTCSKPGQCNGKDTEKRDC 3307
C +H + +++ + F + + +L G RN + L +L+ I + W+ D + C S+G KE C N++ ++ + D++ CGT + PV S +L + G C +P+H +T+ GE+ AT D GRD ++ G P + Y +K +F+ S+ IGN Y FF E A E+ G R C+ D GG F+ WTTF KARLNC + + L + + Y I+T + ASA+C F + +AFSG F + + W NP + C L ++ NL+ + F+ H ++ + ++T P +M+ +RFS +A+D G +E L++II D G I + L T SC++EEI E + Q+ H + +L++ + ++ + C Y +S CI A +P CGW + +C S+ S + T Q ++ CP R L + F WS W +G CL R R C S C C+ E+ NC+ N G W+ W WS C CG ++R R C +P P +GGR C+G++ E C + ++ ++ WT W W C + + R R C C G + E + C
Sbjct: 30 CQRTEHPVISYKEIGPWLREFRAKNAVDFSQLTFDPGQKELVVGARNYLFRLQLEDLSLIQAVEWECDEATKKACYSKG-KSKEECQNYIRVLLVGGDRLFTCGTNAFTPVCTNRSLSNLTEIHDQISGMARCPY-SPQHNSTALLTAGGELYAATAMDFPGRDPAIYRSLGILPPLRTAQYNSKWLN-------EPNFVSSYDIGNFTYFFFRENAVEHDCGKTVFSRAARVCKNDIGG-RFLLEDTWTTFMKARLNC-SRPGEVPFYYNELQSTFFLPELDLIYGIFTTNVNSIAASAVCVFNLSAIAQAFSGPFKYQENSRSAWLPYPNPNPHFQCGTVDQGLYVNL----------TERNLQDAQKFILMHEVV-QPVTTVPS---FMEDNSRFSHVAVDVVQG----REALVHIIYLATDYGTIKKVRVPLNQTSSSCLLEEIELFPERRREPIRSLQILHSQSVLFVGLRE--HVVKIPLKRCQFYRTRSTCIGAQDPYCGWDVVMKKCTSLEESLSMTQWEQSISACPTRNLTVDGHFGVWSPWTPCTHTDGSAVGSCLCRTRSCDSPAPQCGGWQCEGPGMEIANCSRN---------------GGWTPWTSWSPCS--TTCGIGFQVRQRSCSNPTPRHGGRVCVGQNREERYC--NEHLLCPPHMFWTGWGPWERCTAQCGGGIQARRRICENGPDCAGCNVEYQSC 696 The following BLAST results are available for this feature:
BLAST of TCONS_00061931 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.