TCONS_00061950 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061950
Unique NameTCONS_00061950
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1758

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061950 ID=TCONS_00061950|Name=TCONS_00061950|organism=Clytia hemisphaerica|type=transcript|length=1758bp
ttatagaTCAAAAATGCAATGTAGATAGTTCTGTCAAAGTATTTGTCAAC
AGATGGACTCGACAATACTTGAGGCTGTATTTGCATATGAATACACAGAT
GACGATGGAGCACACATAAGCTTCAATAAAGGCGAGCGCTTCATTCTTCT
CAACAAGTCTTCGGATGATTGGTGGAAAGTGCAACGAACTGGAGTGTTCA
AAGGGAAAAGTATTTGCTATGTGCCAGCTTCTTACGTCAAAGAAATTAAT
ATCACCCCTAGAGGGAAATCTGGTTTTGTCAACCAGTATGTCAATATGGA
AGTTTATAAGAAAATCATGAAGAGAGATATGGAAGGTTTGGCAAAGCTTG
GACATCAATCACTTGTGGTGACGCGACCAAACAACGCACAAATCACTTCT
TATAATGATGAAGAGGAATACGAGTCGGAGTCAGCtgatgatgaagatga
tgagGCTTTCGATCCAAGTTTGGATGACATTCCTGCAGATCTGCGCAGTC
TCAATATCAATACTAATGATGAGAACTATCCAAGTCCACCTCCAGATTCC
CTACCTTCATTATCCTTCGAAATCTCACCAAGAAAAACTGATCAACTCAA
ATCTTTCACTTTACCTTCTGGGCGGTCAAACCGAAACTCAAAGAGAGATA
GCTACAACTCGTCTTTCTATAATGAAGCAAGAAGTGAAATGAAAAAGACA
CCAAGCTCACATTCTGGTAGCAGTCTGTCAGATTTATCGCAGGAAAATAT
ATCTCAAGAAAGAATAGATATACCCCGGATATCAACATCCCCAGTGATGT
CAAATGCACCCAAAGGATGGACTGTGGAGATTGAACCTCAAACACATGAT
GAAATATTTATCAACAATGTCACAAAAGAAAGGTGGAAATCATGCGTGGA
TAAAAGTGGACGAACATATTTCTATAACATGAATGGTCCTGGAACGACTT
GGGCTCTTCCTGAGGTCTCAGATTCTGGAAGATCAAAAAATATGCGAAGA
AACTCATTTGGTGAGACGTTAGAAGGCGTGATCAGACGACAAACAGNCAA
CGGACTGGAGTGTTCAAAGGGAAAAGTATTTGCTATGTGCCAGCTTCTTA
CGTCAAAGAAATTAATATCACCCCTAGAGGGAAATCTGGTTTTGTCAACC
AGTATGTCAATATGGAAGTTTATAAGAAAATCATGAAGAGAGATATGGAA
GGTTTGGCAAAGCTTGGACATCAATCACTTGTGGTGACTCGACCAAACAA
CGCACAAATCACTTCTTATAATGATGAAGAGGAGGAATATGAGTCAGAGT
CAGCtgatgatgaagatgatgagGCTTTTGATCCAAGTTTGGATGACATT
CCCGCTGATCTGCGCAGTCTCAATATCAATACTAATGATGAGAACTATCC
AAGTCCACCTCCAGATTCCCTACCTTCATTATCCTTCGAAATCTCACCAA
GAAAAACTGATCAACTCAAATCTTTCACTTTACCTTCTGGGCGGTCAAAC
CGAAACTCAAAGAGAGATAGCTACAACTCGTCTTTCTATAATGAAGCAAG
AAGTGAAATGAAAAAGACACCAAGCTCACATTCTGGTAGCAGTCTGTCAG
ATTTATCGCAGGAAAATATATCTCAAGAAAGAATAGATATACCCCGGATA
TCAACATCCCCAGTGATGTCAAATGCACCCAAAGGATGGACTGTGGAGAT
TGAACCTCAAACACATGATGAAATATTTATCAACAATGTCACAAAAGAAA
GGgttggt
Run BLAST on NCBI

transcript from alignment at scaffold_361:1645414..1649005+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061950 ID=TCONS_00061950|Name=TCONS_00061950|organism=Clytia hemisphaerica|type=transcript|length=3592bp|location=Sequence derived from alignment at scaffold_361:1645414..1649005+ (Clytia hemisphaerica)
ttatagaTCAAAAATGCAATGTAGATAGTTCTGTCAAAGTATTTGTCAAC
AGATGGACTCGACAATACTTGAGGCTGTATTTGCATATGAATACACAGAT
GACGATGGAGCACACATAAGCTTCAATAAAGGCGAGCGCTTCATTCTTCT
CAACAAGTCTTCGGATGATTGGTGGAAAGTGCAACGAACTGGAGTGTTCA
AAGGGAAAAGTATTTGCTATGTGCCAGCTTCTTACGTCAAAGAAATTAAT
ATCACCCCTAGAGGGAAATCTGGTTTTGTCAACCAGTATGTCAATATGGA
AGTTTATAAGAAAATCATGAAGAGAGATATGGAAGGTTTGGCAAAGCTTG
GACATCAATCACTTGTGGTGACGCGACCAAACAACGCACAAATCACTTCT
TATAATGATGAAGAGGAATACGAGTCGGAGGTAAGAAAaacttttaatga
tttttttttgaaaatgatcagTAATATTCCTAAAGTTTAAAGTCTgtgtt
tttctgttttctttcaaTTCTTGAAGCTTTAAATCTAGTCAAGTTAAGAT
TTCGGAAAAGTATTTCTTTCTTGAATAATCAGCAGGTTGCCTTACCAGTA
ACAACGATCACATCTTGCGAacatgaaaattaattttttcctttttgttt
ttctcaatACAGTCAGCtgatgatgaagatgatgagGCTTTCGATCCAAG
TTTGGATGACATTCCTGCAGATCTGCGCAGTCTCAATATCAATACTAATG
ATGAGGTGAGTTGTTGGGGAGCTTcttgatgaaaataattcaaaatcttc
atcaaCTCCCAAAAAtacttttccctttttttctgaTAATTACATTATTT
TATAAAAGTCTTATCTACTTTTGTGCTGTTTGGGGGTACTTCTTGCTCTT
GAAAGTGACCCCATGAGTTAATGGTTTTAGCTTCTTAGATTACTTTGatt
ttattgttaaaatattAACATGTGTGTTTCATAACAAAATATGTCATCAA
TATTTCTAATACTCTCTAGAACTATCCAAGTCCACCTCCAGATTCCCTAC
CTTCATTATCCTTCGAAATCTCACCAAGAAAAACTGATCAACTCAAATCT
TTCACTTTACCTTCTGGGCGGTCAAACCGAAACTCAAAGAGAGATAGCTA
CAACTCGTCTTTCTATAATGAAGCAAGAAGTGAAATGAAAAAGACACCAA
GCTCACATTCTGGTAGCAGTCTGTCAGATTTATCGCAGGAAAATATATCT
CAAGAAAGAATAGATATAGTAAGTAAAATAAGCTCGAATTGCGTTTGGAT
GAAAGTTGtctttatttttgattaaagTAAGCAATATAATTATATCTGGT
TGATCACGGTGTTGCAATGtcttttgtctcaaaatctcaACATTGAGCTA
CAAAGCTTTATGAATTCTATTTTCAGCCCCGGATATCAACATCCCCAGTG
ATGTCAAATGCACCCAAAGGATGGACTGTGGAGATTGAACCTCAAACACA
TGATGAAATATTTATCAACAATGTCACAAAAGAAAGGGTTGGTTTTTTTA
TTTTCAAAGTTTTGTTCCAGAGAATTTATATTTCGATGCTTAAAGTAAGG
TAAAGAACTTTTAATTCATTCCTTAGGCCGCTTTATATTTATTTTAGTTC
TACCAACAAAAGAACAGAAATTCATCGATGAACAGTGAATGCTGTAATTT
TGTCACTAGAACATCTTTATAACACCTTCATATGAACTTCTCTTATAGTG
GAAATCATGCGTGGATAAAAGTGGACGAACATATTTCTATAACATGAATG
GTCCTGGAACGACTTGGGCTCTTCCTGAGGTTTGTGCTTTTGATTTGCTT
TGTTTTGTCCGGATAATCAAAATCTAGTAAATACCCGAAGGTAGGGGAGG
GCGCCACTCTTTCTCCCTggattgctccacttactcttgatccttctctt
aattgctgagcatcaagcagagaggcatcaagtaccattttgggaatctt
tggtatgacccggctgggggtaaACCTGCAACCTTGCAAactgtagccgg
atgctctaccactgcactattGTCGCTCATCTCGAAATCTAATAAATGCT
CACGTGGTGGTTAAACCATGTTTGtggcttcaaaaatttaattttatgtt
tttacctTCAGGTCTCAGATTCTGGAAGATCAAAAAATATGCGAAGAAAC
TCATTTGGTGAGACGTTAGAAGGCGTGATCAGACGACAAACAGNCAACGG
ACTGGAGTGTTCAAAGGGAAAAGTATTTGCTATGTGCCAGCTTCTTACGT
CAAAGAAATTAATATCACCCCTAGAGGGAAATCTGGTTTTGTCAACCAGT
ATGTCAATATGGAAGTTTATAAGAAAATCATGAAGAGAGATATGGAAGGT
TTGGCAAAGCTTGGACATCAATCACTTGTGGTGACTCGACCAAACAACGC
ACAAATCACTTCTTATAATGATGAAGAGGAGGAATATGAGTCAGAGgtta
gaaaatgattttttttgaaaattatttgtaATATTCTTAAAGTTTAAAAT
CTGGCGTTTTCCTGTTTTCTTTCAATTCTTGAAGCTTTAAATCTAGTCAA
GTTAAGATTTcgtaaaattatatttctttctTGAATAATAAGCAGGTTGC
CTCACCAGCAACAACAATCACATCTTTCGAACatgaaaacttaatttttt
cctttttgtttttctcaatACAGTCAGCtgatgatgaagatgatgagGCT
TTTGATCCAAGTTTGGATGACATTCCCGCTGATCTGCGCAGTCTCAATAT
CAATACTAATGATGAGGTGAGTTGTTGGGGAGCTTCTTGatctccaaaaa
atacttttcccttttttctgatATTTAGATTATTTTGTAAAAGTCTTATC
TACTTTTTATGCACCAGGAAAGTGCTGTTTAGGGGTGCTTCTTGCTCTTG
AAAGTGACCCCATGAGTTGATGGTATTAGCTTCttagattattttgattt
tattgttaaaatattAACATGTGTGTTTCATAACAAAATATGTCATCAAT
ATTTCTAATACTCTCTAGAACTATCCAAGTCCACCTCCAGATTCCCTACC
TTCATTATCCTTCGAAATCTCACCAAGAAAAACTGATCAACTCAAATCTT
TCACTTTACCTTCTGGGCGGTCAAACCGAAACTCAAAGAGAGATAGCTAC
AACTCGTCTTTCTATAATGAAGCAAGAAGTGAAATGAAAAAGACACCAAG
CTCACATTCTGGTAGCAGTCTGTCAGATTTATCGCAGGAAAATATATCTC
AAGAAAGAATAGATATAGTAAGTAAAATAAGCTCGAATTGCGTTTGGATG
AAAGTTGtctttatttttgattaaagTAAGCAATATAATTATATCTGGTT
GATCACGGTGTTGCAATGtcttttgtctcaaaatctcaACATTGAGCTAC
AAAGCTTTATGAATTCTATTTTCAGCCCCGGATATCAACATCCCCAGTGA
TGTCAAATGCACCCAAAGGATGGACTGTGGAGATTGAACCTCAAACACAT
GATGAAATATTTATCAACAATGTCACAAAAGAAAGGgttggt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038839XLOC_038839Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061950-exon-scaffold_361-1491911889:1645414..1645843TCONS_00061950-exon-scaffold_361-1491911889:1645414..1645843Clytia hemisphaericaexon
TCONS_00061950-exon-scaffold_361-1510915933:1645414..1645843TCONS_00061950-exon-scaffold_361-1510915933:1645414..1645843Clytia hemisphaericaexon
TCONS_00061950-exon-scaffold_361-1575043694:1645414..1645843TCONS_00061950-exon-scaffold_361-1575043694:1645414..1645843Clytia hemisphaericaexon
TCONS_00061950-exon-scaffold_361-1491911889:1646076..1646168TCONS_00061950-exon-scaffold_361-1491911889:1646076..1646168Clytia hemisphaericaexon
TCONS_00061950-exon-scaffold_361-1510915933:1646076..1646168TCONS_00061950-exon-scaffold_361-1510915933:1646076..1646168Clytia hemisphaericaexon
TCONS_00061950-exon-scaffold_361-1575043694:1646076..1646168TCONS_00061950-exon-scaffold_361-1575043694:1646076..1646168Clytia hemisphaericaexon
TCONS_00061950-exon-scaffold_361-1491911889:1646433..1646681TCONS_00061950-exon-scaffold_361-1491911889:1646433..1646681Clytia hemisphaericaexon
TCONS_00061950-exon-scaffold_361-1510915933:1646433..1646681TCONS_00061950-exon-scaffold_361-1510915933:1646433..1646681Clytia hemisphaericaexon
TCONS_00061950-exon-scaffold_361-1575043694:1646433..1646681TCONS_00061950-exon-scaffold_361-1575043694:1646433..1646681Clytia hemisphaericaexon
TCONS_00061950-exon-scaffold_361-1491911889:1646840..1646950TCONS_00061950-exon-scaffold_361-1491911889:1646840..1646950Clytia hemisphaericaexon
TCONS_00061950-exon-scaffold_361-1510915933:1646840..1646950TCONS_00061950-exon-scaffold_361-1510915933:1646840..1646950Clytia hemisphaericaexon
TCONS_00061950-exon-scaffold_361-1575043694:1646840..1646950TCONS_00061950-exon-scaffold_361-1575043694:1646840..1646950Clytia hemisphaericaexon
TCONS_00061950-exon-scaffold_361-1491911889:1647162..1647242TCONS_00061950-exon-scaffold_361-1491911889:1647162..1647242Clytia hemisphaericaexon
TCONS_00061950-exon-scaffold_361-1510915933:1647162..1647242TCONS_00061950-exon-scaffold_361-1510915933:1647162..1647242Clytia hemisphaericaexon
TCONS_00061950-exon-scaffold_361-1575043694:1647162..1647242TCONS_00061950-exon-scaffold_361-1575043694:1647162..1647242Clytia hemisphaericaexon
TCONS_00061950-exon-scaffold_361-1491911889:1647575..1647909TCONS_00061950-exon-scaffold_361-1491911889:1647575..1647909Clytia hemisphaericaexon
TCONS_00061950-exon-scaffold_361-1510915933:1647575..1647909TCONS_00061950-exon-scaffold_361-1510915933:1647575..1647909Clytia hemisphaericaexon
TCONS_00061950-exon-scaffold_361-1575043694:1647575..1647909TCONS_00061950-exon-scaffold_361-1575043694:1647575..1647909Clytia hemisphaericaexon
TCONS_00061950-exon-scaffold_361-1491911889:1648137..1648229TCONS_00061950-exon-scaffold_361-1491911889:1648137..1648229Clytia hemisphaericaexon
TCONS_00061950-exon-scaffold_361-1510915933:1648137..1648229TCONS_00061950-exon-scaffold_361-1510915933:1648137..1648229Clytia hemisphaericaexon
TCONS_00061950-exon-scaffold_361-1575043694:1648137..1648229TCONS_00061950-exon-scaffold_361-1575043694:1648137..1648229Clytia hemisphaericaexon
TCONS_00061950-exon-scaffold_361-1491911889:1648482..1648730TCONS_00061950-exon-scaffold_361-1491911889:1648482..1648730Clytia hemisphaericaexon
TCONS_00061950-exon-scaffold_361-1510915933:1648482..1648730TCONS_00061950-exon-scaffold_361-1510915933:1648482..1648730Clytia hemisphaericaexon
TCONS_00061950-exon-scaffold_361-1575043694:1648482..1648730TCONS_00061950-exon-scaffold_361-1575043694:1648482..1648730Clytia hemisphaericaexon
TCONS_00061950-exon-scaffold_361-1491911889:1648889..1649005TCONS_00061950-exon-scaffold_361-1491911889:1648889..1649005Clytia hemisphaericaexon
TCONS_00061950-exon-scaffold_361-1510915933:1648889..1649005TCONS_00061950-exon-scaffold_361-1510915933:1648889..1649005Clytia hemisphaericaexon
TCONS_00061950-exon-scaffold_361-1575043694:1648889..1649005TCONS_00061950-exon-scaffold_361-1575043694:1648889..1649005Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:1645414..1649005 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.05354	1.63672	0.268433	0.500311	18.8687	14.7642	13.274	12.8264	9.06645	12.2742	9.4373	8.06989	7.40731	6.60621	6.00435	8.84285	10.158	9.99111	4.99528	5.88382	6.92576	7.32125	5.96946	7.76491	5.99666	6.67806	7.49636	5.7308	8.90265	7.96011
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061950 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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